This file was obtained by applying Clone Digger tool to the source code of the Bio Python project.
The fragments of code, which are cited below, are not necessary clones. 
Even more so the presense of this code in the project does not lead to defects in it.

The code below falls under the following license:

                 Biopython License Agreement

Permission to use, copy, modify, and distribute this software and its
documentation with or without modifications and for any purpose and
without fee is hereby granted, provided that any copyright notices
appear in all copies and that both those copyright notices and this
permission notice appear in supporting documentation, and that the
names of the contributors or copyright holders not be used in
advertising or publicity pertaining to distribution of the software
without specific prior permission.

THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
OR PERFORMANCE OF THIS SOFTWARE.

Source files:
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/home/peter/clone_digger/biopython-1.44/Bio/Std.py,
/home/peter/clone_digger/biopython-1.44/Bio/triefind.py,
/home/peter/clone_digger/biopython-1.44/Bio/listfns.py,
/home/peter/clone_digger/biopython-1.44/Bio/biblio.py,
/home/peter/clone_digger/biopython-1.44/Bio/EZRetrieve.py,
/home/peter/clone_digger/biopython-1.44/Bio/Decode.py,
/home/peter/clone_digger/biopython-1.44/Bio/NetCatch.py,
/home/peter/clone_digger/biopython-1.44/Bio/HotRand.py,
/home/peter/clone_digger/biopython-1.44/Bio/distance.py,
/home/peter/clone_digger/biopython-1.44/Bio/MaxEntropy.py,
/home/peter/clone_digger/biopython-1.44/Bio/PropertyManager.py,
/home/peter/clone_digger/biopython-1.44/Bio/SeqRecord.py,
/home/peter/clone_digger/biopython-1.44/Bio/kNN.py,
/home/peter/clone_digger/biopython-1.44/Bio/ParserSupport.py,
/home/peter/clone_digger/biopython-1.44/Bio/FormatIO.py,
/home/peter/clone_digger/biopython-1.44/Bio/Seq.py,
/home/peter/clone_digger/biopython-1.44/Bio/LogisticRegression.py,
/home/peter/clone_digger/biopython-1.44/Bio/MarkovModel.py,
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/home/peter/clone_digger/biopython-1.44/Bio/stringfns.py,
/home/peter/clone_digger/biopython-1.44/Bio/Search.py,
/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py,
/home/peter/clone_digger/biopython-1.44/Bio/NaiveBayes.py,
/home/peter/clone_digger/biopython-1.44/Bio/DBXRef.py,
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/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py,
/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIWWW.py,
/home/peter/clone_digger/biopython-1.44/Bio/Blast/ParseBlastTable.py,
/home/peter/clone_digger/biopython-1.44/Bio/Blast/Applications.py,
/home/peter/clone_digger/biopython-1.44/Bio/Blast/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Crystal/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py,
/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Ace.py,
/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py,
/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/KeyWList.py,
/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/builders/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/builders/Search/search.py,
/home/peter/clone_digger/biopython-1.44/Bio/builders/Search/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/builders/SeqRecord/sequence.py,
/home/peter/clone_digger/biopython-1.44/Bio/builders/SeqRecord/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Statistics/lowess.py,
/home/peter/clone_digger/biopython-1.44/Bio/Statistics/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/KDTree/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/KDTree/KDTree.py,
/home/peter/clone_digger/biopython-1.44/Bio/KDTree/CKDTree.py,
/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py,
/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py,
/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Input.py,
/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py,
/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/web_parse.py,
/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Ais/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/fasta.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/genbank.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/interpro.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/prosite.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/_support.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/swissprot.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/prodoc.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/embl.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/pdb.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/medline.py,
/home/peter/clone_digger/biopython-1.44/Bio/HMM/DynamicProgramming.py,
/home/peter/clone_digger/biopython-1.44/Bio/HMM/Utilities.py,
/home/peter/clone_digger/biopython-1.44/Bio/HMM/Trainer.py,
/home/peter/clone_digger/biopython-1.44/Bio/HMM/MarkovModel.py,
/home/peter/clone_digger/biopython-1.44/Bio/HMM/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/AlignAce/AlignAceStandalone.py,
/home/peter/clone_digger/biopython-1.44/Bio/AlignAce/Motif.py,
/home/peter/clone_digger/biopython-1.44/Bio/AlignAce/Parser.py,
/home/peter/clone_digger/biopython-1.44/Bio/AlignAce/CompareAceStandalone.py,
/home/peter/clone_digger/biopython-1.44/Bio/AlignAce/Scanner.py,
/home/peter/clone_digger/biopython-1.44/Bio/AlignAce/Applications.py,
/home/peter/clone_digger/biopython-1.44/Bio/AlignAce/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/ECell/ecell_format.py,
/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py,
/home/peter/clone_digger/biopython-1.44/Bio/ECell/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/writers/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/writers/SeqRecord/empty.py,
/home/peter/clone_digger/biopython-1.44/Bio/writers/SeqRecord/fasta.py,
/home/peter/clone_digger/biopython-1.44/Bio/writers/SeqRecord/embl.py,
/home/peter/clone_digger/biopython-1.44/Bio/writers/SeqRecord/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Fasta/FastaAlign.py,
/home/peter/clone_digger/biopython-1.44/Bio/Fasta/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Mindy/Location.py,
/home/peter/clone_digger/biopython-1.44/Bio/Mindy/SimpleSeqRecord.py,
/home/peter/clone_digger/biopython-1.44/Bio/Mindy/BerkeleyDB.py,
/home/peter/clone_digger/biopython-1.44/Bio/Mindy/BaseDB.py,
/home/peter/clone_digger/biopython-1.44/Bio/Mindy/compression.py,
/home/peter/clone_digger/biopython-1.44/Bio/Mindy/XPath.py,
/home/peter/clone_digger/biopython-1.44/Bio/Mindy/FlatDB.py,
/home/peter/clone_digger/biopython-1.44/Bio/Mindy/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/ProtParam.py,
/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/CodonUsageIndices.py,
/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/CheckSum.py,
/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/ProtParamData.py,
/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/lcc.py,
/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/IsoelectricPoint.py,
/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/MeltingTemp.py,
/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/CodonUsage.py,
/home/peter/clone_digger/biopython-1.44/Bio/Saf/Record.py,
/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py,
/home/peter/clone_digger/biopython-1.44/Bio/Saf/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/MultiProc/Scheduler.py,
/home/peter/clone_digger/biopython-1.44/Bio/MultiProc/copen.py,
/home/peter/clone_digger/biopython-1.44/Bio/MultiProc/Task.py,
/home/peter/clone_digger/biopython-1.44/Bio/MultiProc/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/GenBank/utils.py,
/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py,
/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Scanner.py,
/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/GenBank/LocationParser.py,
/home/peter/clone_digger/biopython-1.44/Bio/Alphabet/IUPAC.py,
/home/peter/clone_digger/biopython-1.44/Bio/Alphabet/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Alphabet/Reduced.py,
/home/peter/clone_digger/biopython-1.44/Bio/Wise/dnal.py,
/home/peter/clone_digger/biopython-1.44/Bio/Wise/psw.py,
/home/peter/clone_digger/biopython-1.44/Bio/Wise/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Pathway/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Pathway/Rep/HashSet.py,
/home/peter/clone_digger/biopython-1.44/Bio/Pathway/Rep/Graph.py,
/home/peter/clone_digger/biopython-1.44/Bio/Pathway/Rep/MultiGraph.py,
/home/peter/clone_digger/biopython-1.44/Bio/Pathway/Rep/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py,
/home/peter/clone_digger/biopython-1.44/Bio/Medline/NLMMedlineXML.py,
/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py,
/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py,
/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py,
/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Affy/CelFile.py,
/home/peter/clone_digger/biopython-1.44/Bio/Affy/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/MEME/Motif.py,
/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py,
/home/peter/clone_digger/biopython-1.44/Bio/MEME/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/Emboss/primer3_format.py,
/home/peter/clone_digger/biopython-1.44/Bio/Emboss/Primer.py,
/home/peter/clone_digger/biopython-1.44/Bio/Emboss/Applications.py,
/home/peter/clone_digger/biopython-1.44/Bio/Emboss/primersearch_format.py,
/home/peter/clone_digger/biopython-1.44/Bio/Emboss/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/GFF/binning.py,
/home/peter/clone_digger/biopython-1.44/Bio/GFF/GenericTools.py,
/home/peter/clone_digger/biopython-1.44/Bio/GFF/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/GFF/easy.py,
/home/peter/clone_digger/biopython-1.44/Bio/Ndb/__init__.py,
/home/peter/clone_digger/biopython-1.44/Bio/FSSP/fssp_rec.py,
/home/peter/clone_digger/biopython-1.44/Bio/FSSP/FSSPTools.py,
/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py

Clones detected: 1695

Parameters
 clustering_threshold = 10
distance_threshold = 5
length_threshold = 30
hashing_depth = 1
clusterize_using_hash = False

Time elapsed
Construction of AST : 46.16 seconds
Building statement hash : 0.48 seconds
Building patterns : 2097.18 seconds
Marking similar statements : 3935.12 seconds
Finding similar sequences of statements : 23.38 seconds
Refining candidates : 1478.60 seconds
Total time: 7580.93

Clone # 1
Anti-unification distance between two trees = 4
Total size of two trees = 472
Total length of sequences = 130
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 133		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 128
group_elem("MeshHeadingList",  Rep1(MeshHeading)) group_elem("MeshHeadingList",  Rep1(MeshHeading))
simple_elem("MedlinePgn") simple_elem("MedlinePgn")
simple_elem("EndPage") simple_elem("EndPage")
simple_elem("StartPage") simple_elem("StartPage")
group_elem("Pagination",
Alt(StartPage  +  Opt(EndPage)  +  Opt(MedlinePgn),  MedlinePgn))		 group_elem("Pagination",
Alt(StartPage  +  Opt(EndPage)  +  Opt(MedlinePgn),  MedlinePgn))
simple_elem("Affiliation") simple_elem("Affiliation")
group_elem("Author",  author_name  +  Opt(Affiliation)) group_elem("Author",  author_name  +  Opt(Affiliation))
group_elem("AuthorList",  Rep1(Author),  "CompleteYN") group_elem("AuthorList",  Rep1(Author),  "CompleteYN")
simple_elem("Language") simple_elem("Language")
simple_elem("PublicationType") simple_elem("PublicationType")
group_elem("PublicationTypeList",  Rep1(PublicationType)) group_elem("PublicationTypeList",  Rep1(PublicationType))
simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions
simple_elem("Volume")          #  will  be  before  Book. simple_elem("Volume")          #  will  be  before  Book.
simple_elem("VernacularTitle") simple_elem("VernacularTitle")
simple_elem("CollectionTitle") simple_elem("CollectionTitle")
simple_elem("ArticleTitle") simple_elem("ArticleTitle")
simple_elem("Publisher") simple_elem("Publisher")
group_elem("PubDate",  pub_date) group_elem("PubDate",  pub_date)
group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))		 group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))
simple_elem("Country") simple_elem("Country")
simple_elem("MedlineTA") simple_elem("MedlineTA")
simple_elem("MedlineCode") simple_elem("MedlineCode")
group_elem("MedlineJournalInfo",
Opt(Country)  +  MedlineTA  +  Opt(MedlineCode)  +  Opt(NlmUniqueID))		 group_elem("MedlineJournalInfo",
Opt(Country)  +  MedlineTA  +  Opt(MedlineCode)  +  Opt(NlmUniqueID))
simple_elem("DateOfElectronicPublication") simple_elem("DateOfElectronicPublication")
simple_elem("ISOAbbreviation") simple_elem("ISOAbbreviation")
simple_elem("Coden") simple_elem("Coden")
simple_elem("Issue") simple_elem("Issue")
group_elem("JournalIssue",  Opt(Volume)  +  Opt(Issue)  +  PubDate) group_elem("JournalIssue",  Opt(Volume)  +  Opt(Issue)  +  PubDate)
simple_elem("ISSN") simple_elem("ISSN")
group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)		 group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)
simple_elem("GrantID") simple_elem("GrantID")
simple_elem("Acronym") simple_elem("Acronym")
simple_elem("Agency") simple_elem("Agency")
group_elem("Grant",  Opt(GrantID)  +  Opt(Acronym)  +  Opt(Agency)) group_elem("Grant",  Opt(GrantID)  +  Opt(Acronym)  +  Opt(Agency))
group_elem("GrantList",  Rep1(Grant),  "CompleteYN") group_elem("GrantList",  Rep1(Grant),  "CompleteYN")
simple_elem("AccessionNumber") simple_elem("AccessionNumber")
group_elem("AccessionNumberList",  Rep1(AccessionNumber)) group_elem("AccessionNumberList",  Rep1(AccessionNumber))
simple_elem("DataBankName") simple_elem("DataBankName")
group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList)) group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList))
group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN") group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN")
group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)		 group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)
group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo)) group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo))
simple_elem("MedlineID") simple_elem("MedlineID")
simple_elem("Note") simple_elem("Note")
simple_elem("RefSource") simple_elem("RefSource")
Ref_template  =  RefSource  +  Opt(Alt(PMID,  MedlineID))  +  Opt(Note) Ref_template  =  RefSource  +  Opt(MedlineID)  +  Opt(Note)
group_elem("OriginalReportIn",  Ref_template) group_elem("OriginalReportIn",  Ref_template)
group_elem("SummaryForPatientsIn",  Ref_template) group_elem("SummaryForPatientsIn",  Ref_template)
group_elem("CommentOn",  Ref_template) group_elem("CommentOn",  Ref_template)
group_elem("CommentIn",  Ref_template) group_elem("CommentIn",  Ref_template)
group_elem("ErratumIn",  Ref_template) group_elem("ErratumIn",  Ref_template)
group_elem("RepublishedFrom",  Ref_template) group_elem("RepublishedFrom",  Ref_template)
group_elem("RepublishedIn",  Ref_template) group_elem("RepublishedIn",  Ref_template)
group_elem("RetractionOf",  Ref_template) group_elem("RetractionOf",  Ref_template)
group_elem("RetractionIn",  Ref_template) group_elem("RetractionIn",  Ref_template)
group_elem("UpdateIn",  Ref_template) group_elem("UpdateIn",  Ref_template)
group_elem("UpdateOf",  Ref_template) group_elem("UpdateOf",  Ref_template)
group_elem("CommentsCorrections",
Rep(CommentOn)  +  Rep(CommentIn)  +  \
Rep(ErratumIn)  +  \
Rep(RepublishedFrom)  +  Rep(RepublishedIn)  +  \
Rep(RetractionOf)  +  Rep(RetractionIn)  +  \
Rep(UpdateIn)  +  Rep(UpdateOf)  +  \
Rep(SummaryForPatientsIn)  +  Rep(OriginalReportIn)		 group_elem("CommentsCorrections",
Rep(CommentOn)  +  Rep(CommentIn)  +  \
Rep(ErratumIn)  +  \
Rep(RepublishedFrom)  +  Rep(RepublishedIn)  +  \
Rep(RetractionOf)  +  Rep(RetractionIn)  +  \
Rep(UpdateIn)  +  Rep(UpdateOf)  +  \
Rep(SummaryForPatientsIn)  +  Rep(OriginalReportIn)
simple_elem("NumberOfReferences") simple_elem("NumberOfReferences")
group_elem("PersonalNameSubject",  personal_name) group_elem("PersonalNameSubject",  personal_name)
group_elem("PersonalNameSubjectList",  Rep1(PersonalNameSubject)) group_elem("PersonalNameSubjectList",  Rep1(PersonalNameSubject))
simple_elem("GeneSymbol") simple_elem("GeneSymbol")
group_elem("GeneSymbolList",  Rep1(GeneSymbol)) group_elem("GeneSymbolList",  Rep1(GeneSymbol))
simple_elem("NameOfSubstance") simple_elem("NameOfSubstance")
simple_elem("CASRegistryNumber") simple_elem("CASRegistryNumber")


Clone # 2
Anti-unification distance between two trees = 2
Total size of two trees = 304
Total length of sequences = 40
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 14		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 14
import  warnings import  warnings
warnings.warn("Bio.Medline.NLMMedlineXML  was  deprecated,  as  it  does  not  seem  to  be  able  to  parse  recent  Medline  XML  files.  If  you  want  to  continue  to  use  this  module,  please  get  in  contact  with  the  Biopython  developers  at  biopython-dev@biopython.org  to  avoid  permanent  removal  of  this  module  from  Biopython",  DeprecationWarning) warnings.warn("Bio.Medline.NLMMedlineXML  was  deprecated,  as  it  does  not  seem  to  be  able  to  parse  recent  Medline  XML  files.  If  you  want  to  continue  to  use  this  module,  please  get  in  contact  with  the  Biopython  developers  at  biopython-dev@biopython.org  to  avoid  permanent  removal  of  this  module  from  Biopython",  DeprecationWarning)
import  sys import  sys
from  Martel  import  * from  Martel  import  *
from  Martel  import  RecordReader from  Martel  import  RecordReader
self  =  sys.modules[__name__] self  =  sys.modules[__name__]
def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start		 def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start
def  _end_elem(element):
return  Str(""  %  element)		 def  _end_elem(element):
return  Str(""  %  element)
def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)		 def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)
def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)		 def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)
elements  =  [
"FirstName",  "MiddleName",  "LastName",
"Initials",  "Suffix",
"CollectiveName"		 elements  =  [
"FirstName",  "MiddleName",  "LastName",
"Initials",  "Suffix",
"CollectiveName"
[simple_elem(e)  for  e  in  elements] [simple_elem(e)  for  e  in  elements]
personal_name  =  LastName  +  \
Opt(FirstName  +  Opt(MiddleName))  +  \
Opt(Initials)  +  \
Opt(Suffix)		 personal_name  =  LastName  +  \
Opt(FirstName  +  Opt(MiddleName))  +  \
Opt(Initials)  +  \
Opt(Suffix)
author_name  =  Alt(personal_name,  CollectiveName) author_name  =  Alt(personal_name,  CollectiveName)
elements  =  [
"Year",  "Month",  "Day",
"Season",  "MedlineDate",
"Hour",  "Minute",  "Second"		 elements  =  [
"Year",  "Month",  "Day",
"Season",  "MedlineDate",
"Hour",  "Minute",  "Second"
[simple_elem(e)  for  e  in  elements] [simple_elem(e)  for  e  in  elements]
normal_date  =  Year  +  Month  +  Day  +  \
Opt(Hour  +  Opt(Minute  +  Opt(Second)))		 normal_date  =  Year  +  Month  +  Day  +  \
Opt(Hour  +  Opt(Minute  +  Opt(Second)))
pub_date  =  Alt((Year  +  Opt(Alt((Month  +  Opt(Day)),  Season))),  MedlineDate) pub_date  =  Alt((Year  +  Opt(Alt((Month  +  Opt(Day)),  Season))),  MedlineDate)
simple_elem("CopyrightInformation") simple_elem("NlmUniqueID")
simple_elem("AbstractText") simple_elem("PMID")


Clone # 3
Anti-unification distance between two trees = 0
Total size of two trees = 294
Total length of sequences = 82
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 106		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 117
elements  =  [
"Year",  "Month",  "Day",
"Season",  "MedlineDate",
"Hour",  "Minute",  "Second"		 elements  =  [
"Year",  "Month",  "Day",
"Season",  "MedlineDate",
"Hour",  "Minute",  "Second"
[simple_elem(e)  for  e  in  elements] [simple_elem(e)  for  e  in  elements]
normal_date  =  Year  +  Month  +  Day  +  \
Opt(Hour  +  Opt(Minute  +  Opt(Second)))		 normal_date  =  Year  +  Month  +  Day  +  \
Opt(Hour  +  Opt(Minute  +  Opt(Second)))
pub_date  =  Alt((Year  +  Opt(Alt((Month  +  Opt(Day)),  Season))),  MedlineDate) pub_date  =  Alt((Year  +  Opt(Alt((Month  +  Opt(Day)),  Season))),  MedlineDate)
simple_elem("CopyrightInformation") simple_elem("CopyrightInformation")
simple_elem("AbstractText") simple_elem("AbstractText")
group_elem("Abstract",  AbstractText  +  Opt(CopyrightInformation)) group_elem("Abstract",  AbstractText  +  Opt(CopyrightInformation))
simple_elem("NlmUniqueID") simple_elem("NlmUniqueID")
simple_elem("PMID") simple_elem("PMID")
simple_elem("SubHeading",  "MajorTopicYN") simple_elem("SubHeading",  "MajorTopicYN")
simple_elem("QualifierName",  "MajorTopicYN") simple_elem("QualifierName",  "MajorTopicYN")
simple_elem("Descriptor",  "MajorTopicYN") simple_elem("Descriptor",  "MajorTopicYN")
simple_elem("DescriptorName",  "MajorTopicYN") simple_elem("DescriptorName",  "MajorTopicYN")
group_elem("MeshHeading",
Alt(DescriptorName,  Descriptor)  +  \
Alt(Rep(QualifierName),  Rep(SubHeading)))		 group_elem("MeshHeading",
Alt(DescriptorName,  Descriptor)  +  \
Alt(Rep(QualifierName),  Rep(SubHeading)))
group_elem("MeshHeadingList",  Rep1(MeshHeading)) group_elem("MeshHeadingList",  Rep1(MeshHeading))
simple_elem("MedlinePgn") simple_elem("MedlinePgn")
simple_elem("EndPage") simple_elem("EndPage")
simple_elem("StartPage") simple_elem("StartPage")
group_elem("Pagination",
Alt(StartPage  +  Opt(EndPage)  +  Opt(MedlinePgn),  MedlinePgn))		 group_elem("Pagination",
Alt(StartPage  +  Opt(EndPage)  +  Opt(MedlinePgn),  MedlinePgn))
simple_elem("Affiliation") simple_elem("Affiliation")
group_elem("Author",  author_name  +  Opt(Affiliation)) group_elem("Author",  author_name  +  Opt(Affiliation))
group_elem("AuthorList",  Rep1(Author),  "CompleteYN") group_elem("AuthorList",  Rep1(Author),  "CompleteYN")
simple_elem("Language") simple_elem("Language")
simple_elem("PublicationType") simple_elem("PublicationType")
group_elem("PublicationTypeList",  Rep1(PublicationType)) group_elem("PublicationTypeList",  Rep1(PublicationType))
simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions
simple_elem("Volume")          #  will  be  before  Book. simple_elem("Volume")          #  will  be  before  Book.
simple_elem("VernacularTitle") simple_elem("VernacularTitle")
simple_elem("CollectionTitle") simple_elem("CollectionTitle")
simple_elem("ArticleTitle") simple_elem("ArticleTitle")
simple_elem("Publisher") simple_elem("Publisher")
group_elem("PubDate",  pub_date) group_elem("PubDate",  pub_date)
group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))		 group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))
simple_elem("Country") simple_elem("Country")
simple_elem("MedlineTA") simple_elem("MedlineTA")
simple_elem("MedlineCode") simple_elem("MedlineCode")
group_elem("MedlineJournalInfo",
Opt(Country)  +  MedlineTA  +  Opt(MedlineCode)  +  Opt(NlmUniqueID))		 group_elem("MedlineJournalInfo",
Opt(Country)  +  MedlineTA  +  Opt(MedlineCode)  +  Opt(NlmUniqueID))
simple_elem("DateOfElectronicPublication") simple_elem("DateOfElectronicPublication")
simple_elem("ISOAbbreviation") simple_elem("ISOAbbreviation")
simple_elem("Coden") simple_elem("Coden")
simple_elem("Issue") simple_elem("Issue")


Clone # 4
Anti-unification distance between two trees = 4
Total size of two trees = 230
Total length of sequences = 44
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 248		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 259
simple_elem("RegistryNumber") simple_elem("RegistryNumber")
group_elem("Chemical",  Alt(CASRegistryNumber,  RegistryNumber)  +  \
NameOfSubstance)		 group_elem("Chemical",  RegistryNumber  +  NameOfSubstance)
group_elem("ChemicalList",  Rep1(Chemical)) group_elem("ChemicalList",  Rep1(Chemical))
simple_elem("CitationSubset") simple_elem("CitationSubset")
simple_elem("GeneralNote",  "Owner") simple_elem("GeneralNote",  "Owner")
group_elem("Investigator",  personal_name  +  Opt(Affiliation)) group_elem("Investigator",  personal_name  +  Opt(Affiliation))
group_elem("InvestigatorList",  Rep1(Investigator)) group_elem("InvestigatorList",  Rep1(Investigator))
simple_elem("OtherID",  "Source") simple_elem("OtherID",  "Source")
simple_elem("SpaceFlightMission") simple_elem("SpaceFlightMission")
simple_elem("Keyword",  "MajorTopicYN") simple_elem("Keyword",  "MajorTopicYN")
group_elem("KeywordList",  Rep1(Keyword),  "Owner") group_elem("KeywordList",  Rep1(Keyword),  "Owner")
group_elem("OtherAbstract",
AbstractText  +  Opt(CopyrightInformation),
"Type")		 group_elem("OtherAbstract",
AbstractText  +  Opt(CopyrightInformation),
"Type")
group_elem("DateRevised",  normal_date) group_elem("DateRevised",  normal_date)
group_elem("DateCompleted",  normal_date) group_elem("DateCompleted",  normal_date)
group_elem("DateCreated",  normal_date) group_elem("DateCreated",  normal_date)
group_elem("MedlineCitation",
Opt(MedlineID)  +  \
Opt(PMID)  +  \
DateCreated  +  \
Opt(DateCompleted)  +  \
Opt(DateRevised)  +  \
Article  +  \
MedlineJournalInfo  +  \
Opt(ChemicalList)  +  \
Rep(CitationSubset)  +  \
Opt(CommentsCorrections)  +  \
Opt(GeneSymbolList)  +  \
Opt(MeshHeadingList)  +  \
Opt(NumberOfReferences)  +  \
Opt(PersonalNameSubjectList)  +  \
Rep(OtherID)  +  \
Rep(OtherAbstract)  +  \
Rep(KeywordList)  +  \
Rep(SpaceFlightMission)  +  \
Opt(InvestigatorList)  +  \
Rep(GeneralNote),
"Owner",  "Status"		 group_elem("MedlineCitation",
Opt(MedlineID)  +  \
Opt(PMID)  +  \
DateCreated  +  \
Opt(DateCompleted)  +  \
Opt(DateRevised)  +  \
Article  +  \
MedlineJournalInfo  +  \
Opt(ChemicalList)  +  \
Rep(CitationSubset)  +  \
Opt(CommentsCorrections)  +  \
Opt(GeneSymbolList)  +  \
Opt(MeshHeadingList)  +  \
Opt(NumberOfReferences)  +  \
Opt(PersonalNameSubjectList)  +  \
Rep(OtherID)  +  \
Rep(OtherAbstract)  +  \
Rep(KeywordList)  +  \
Rep(SpaceFlightMission)  +  \
Opt(InvestigatorList)  +  \
Rep(GeneralNote),
"Owner",  "Status"
space  =  Any("  \t") space  =  Any("  \t")
DeleteCitation_start  =  Rep(space)  +  Str("")  +  AnyEol() DeleteCitation_start  =  Rep(space)  +  Str("")  +  AnyEol()
DeleteCitation_end  =  Rep(space)  +  Str("")  +  AnyEol() DeleteCitation_end  =  Rep(space)  +  Str("")  +  AnyEol()
MedlineCitationSet_end  =  Str("")  +  Opt(AnyEol()) MedlineCitationSet_end  =  Str("")  +  Opt(AnyEol())
group_elem("DeleteCitation",  Alt(Rep1(MedlineID),  Rep1(PMID))) group_elem("DeleteCitation",  Alt(Rep1(MedlineID),  Rep1(PMID)))
group_elem("MedlineCitationSet",  Rep(MedlineCitation)  +  Opt(DeleteCitation)) group_elem("MedlineCitationSet",  Rep(MedlineCitation)  +  Opt(DeleteCitation))


Clone # 5
Anti-unification distance between two trees = 4
Total size of two trees = 220
Total length of sequences = 54
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 165		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 176
simple_elem("ISSN") simple_elem("ISSN")
group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)		 group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)
simple_elem("GrantID") simple_elem("GrantID")
simple_elem("Acronym") simple_elem("Acronym")
simple_elem("Agency") simple_elem("Agency")
group_elem("Grant",  Opt(GrantID)  +  Opt(Acronym)  +  Opt(Agency)) group_elem("Grant",  Opt(GrantID)  +  Opt(Acronym)  +  Opt(Agency))
group_elem("GrantList",  Rep1(Grant),  "CompleteYN") group_elem("GrantList",  Rep1(Grant),  "CompleteYN")
simple_elem("AccessionNumber") simple_elem("AccessionNumber")
group_elem("AccessionNumberList",  Rep1(AccessionNumber)) group_elem("AccessionNumberList",  Rep1(AccessionNumber))
simple_elem("DataBankName") simple_elem("DataBankName")
group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList)) group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList))
group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN") group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN")
group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)		 group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)
group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo)) group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo))
simple_elem("MedlineID") simple_elem("MedlineID")
simple_elem("Note") simple_elem("Note")
simple_elem("RefSource") simple_elem("RefSource")
Ref_template  =  RefSource  +  Opt(Alt(PMID,  MedlineID))  +  Opt(Note) Ref_template  =  RefSource  +  Opt(Alt(PMID,  MedlineID))  +  Opt(Note)
group_elem("OriginalReportIn",  Ref_template) group_elem("OriginalReportIn",  Ref_template)
group_elem("SummaryForPatientsIn",  Ref_template) group_elem("SummaryForPatientsIn",  Ref_template)
group_elem("CommentOn",  Ref_template) group_elem("CommentOn",  Ref_template)
group_elem("CommentIn",  Ref_template) group_elem("CommentIn",  Ref_template)
group_elem("ErratumIn",  Ref_template) group_elem("ErratumIn",  Ref_template)
group_elem("RepublishedFrom",  Ref_template) group_elem("ErratumFor",  Ref_template)
group_elem("RepublishedIn",  Ref_template) group_elem("RepublishedFrom",  Ref_template)
group_elem("RetractionOf",  Ref_template) group_elem("RepublishedIn",  Ref_template)
group_elem("RetractionIn",  Ref_template) group_elem("RetractionOf",  Ref_template)


Clone # 6
Anti-unification distance between two trees = 0
Total size of two trees = 202
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 28		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 25
def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start		 def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start
def  _end_elem(element):
return  Str(""  %  element)		 def  _end_elem(element):
return  Str(""  %  element)
def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)		 def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)
def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)		 def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)
elements  =  [
"FirstName",  "ForeName",  "MiddleName",  "LastName",
"Initials",  "Suffix",
"CollectiveName"		 elements  =  [
"FirstName",  "ForeName",  "MiddleName",  "LastName",
"Initials",  "Suffix",
"CollectiveName"
[simple_elem(e)  for  e  in  elements] [simple_elem(e)  for  e  in  elements]
personal_name  =  LastName  +  \
Opt(Alt(ForeName,  FirstName  +  Opt(MiddleName)))  +  \
Opt(Initials)  +  \
Opt(Suffix)		 personal_name  =  LastName  +  \
Opt(Alt(ForeName,  FirstName  +  Opt(MiddleName)))  +  \
Opt(Initials)  +  \
Opt(Suffix)
author_name  =  Alt(personal_name,  CollectiveName) author_name  =  Alt(personal_name,  CollectiveName)


Clone # 7
Anti-unification distance between two trees = 4
Total size of two trees = 196
Total length of sequences = 48
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 155		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 155
simple_elem("DateOfElectronicPublication") simple_elem("DateOfElectronicPublication")
simple_elem("ISOAbbreviation") simple_elem("ISOAbbreviation")
simple_elem("Coden") simple_elem("Coden")
simple_elem("Issue") simple_elem("Issue")
group_elem("JournalIssue",  Opt(Volume)  +  Opt(Issue)  +  PubDate) group_elem("JournalIssue",  Opt(Volume)  +  Opt(Issue)  +  PubDate)
simple_elem("ISSN") simple_elem("ISSN")
group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)		 group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)
simple_elem("GrantID") simple_elem("GrantID")
simple_elem("Acronym") simple_elem("Acronym")
simple_elem("Agency") simple_elem("Agency")
group_elem("Grant",  GrantID  +  Opt(Acronym)  +  Opt(Agency)) group_elem("Grant",  Opt(GrantID)  +  Opt(Acronym)  +  Opt(Agency))
group_elem("GrantList",  Rep1(Grant),  "CompleteYN") group_elem("GrantList",  Rep1(Grant),  "CompleteYN")
simple_elem("AccessionNumber") simple_elem("AccessionNumber")
group_elem("AccessionNumberList",  Rep1(AccessionNumber)) group_elem("AccessionNumberList",  Rep1(AccessionNumber))
simple_elem("DataBankName") simple_elem("DataBankName")
group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList)) group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList))
group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN") group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN")
group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)		 group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)
group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo)) group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo))
simple_elem("MedlineID") simple_elem("MedlineID")
simple_elem("Note") simple_elem("Note")
simple_elem("RefSource") simple_elem("RefSource")
Ref_template  =  RefSource  +  Opt(MedlineID)  +  Opt(Note) Ref_template  =  RefSource  +  Opt(MedlineID)  +  Opt(Note)
group_elem("CommentOn",  Ref_template) group_elem("OriginalReportIn",  Ref_template)


Clone # 8
Anti-unification distance between two trees = 4
Total size of two trees = 194
Total length of sequences = 46
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 160		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 176
simple_elem("ISSN") simple_elem("ISSN")
group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)		 group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)
simple_elem("GrantID") simple_elem("GrantID")
simple_elem("Acronym") simple_elem("Acronym")
simple_elem("Agency") simple_elem("Agency")
group_elem("Grant",  Opt(GrantID)  +  Opt(Acronym)  +  Opt(Agency)) group_elem("Grant",  Opt(GrantID)  +  Opt(Acronym)  +  Opt(Agency))
group_elem("GrantList",  Rep1(Grant),  "CompleteYN") group_elem("GrantList",  Rep1(Grant),  "CompleteYN")
simple_elem("AccessionNumber") simple_elem("AccessionNumber")
group_elem("AccessionNumberList",  Rep1(AccessionNumber)) group_elem("AccessionNumberList",  Rep1(AccessionNumber))
simple_elem("DataBankName") simple_elem("DataBankName")
group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList)) group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList))
group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN") group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN")
group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)		 group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)
group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo)) group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo))
simple_elem("MedlineID") simple_elem("MedlineID")
simple_elem("Note") simple_elem("Note")
simple_elem("RefSource") simple_elem("RefSource")
Ref_template  =  RefSource  +  Opt(MedlineID)  +  Opt(Note) Ref_template  =  RefSource  +  Opt(Alt(PMID,  MedlineID))  +  Opt(Note)
group_elem("OriginalReportIn",  Ref_template) group_elem("OriginalReportIn",  Ref_template)
group_elem("SummaryForPatientsIn",  Ref_template) group_elem("SummaryForPatientsIn",  Ref_template)
group_elem("CommentOn",  Ref_template) group_elem("CommentOn",  Ref_template)
group_elem("CommentIn",  Ref_template) group_elem("CommentIn",  Ref_template)
group_elem("ErratumIn",  Ref_template) group_elem("ErratumIn",  Ref_template)


Clone # 9
Anti-unification distance between two trees = 0
Total size of two trees = 182
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 14		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 15
import  warnings import  warnings
warnings.warn("Bio.Medline.NLMMedlineXML  was  deprecated,  as  it  does  not  seem  to  be  able  to  parse  recent  Medline  XML  files.  If  you  want  to  continue  to  use  this  module,  please  get  in  contact  with  the  Biopython  developers  at  biopython-dev@biopython.org  to  avoid  permanent  removal  of  this  module  from  Biopython",  DeprecationWarning) warnings.warn("Bio.Medline.NLMMedlineXML  was  deprecated,  as  it  does  not  seem  to  be  able  to  parse  recent  Medline  XML  files.  If  you  want  to  continue  to  use  this  module,  please  get  in  contact  with  the  Biopython  developers  at  biopython-dev@biopython.org  to  avoid  permanent  removal  of  this  module  from  Biopython",  DeprecationWarning)
import  sys import  sys
from  Martel  import  * from  Martel  import  *
from  Martel  import  RecordReader from  Martel  import  RecordReader
self  =  sys.modules[__name__] self  =  sys.modules[__name__]
def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start		 def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start
def  _end_elem(element):
return  Str(""  %  element)		 def  _end_elem(element):
return  Str(""  %  element)
def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)		 def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)
def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)		 def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)


Clone # 10
Anti-unification distance between two trees = 0
Total size of two trees = 182
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 14		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 15
import  warnings import  warnings
warnings.warn("Bio.Medline.NLMMedlineXML  was  deprecated,  as  it  does  not  seem  to  be  able  to  parse  recent  Medline  XML  files.  If  you  want  to  continue  to  use  this  module,  please  get  in  contact  with  the  Biopython  developers  at  biopython-dev@biopython.org  to  avoid  permanent  removal  of  this  module  from  Biopython",  DeprecationWarning) warnings.warn("Bio.Medline.NLMMedlineXML  was  deprecated,  as  it  does  not  seem  to  be  able  to  parse  recent  Medline  XML  files.  If  you  want  to  continue  to  use  this  module,  please  get  in  contact  with  the  Biopython  developers  at  biopython-dev@biopython.org  to  avoid  permanent  removal  of  this  module  from  Biopython",  DeprecationWarning)
import  sys import  sys
from  Martel  import  * from  Martel  import  *
from  Martel  import  RecordReader from  Martel  import  RecordReader
self  =  sys.modules[__name__] self  =  sys.modules[__name__]
def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start		 def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start
def  _end_elem(element):
return  Str(""  %  element)		 def  _end_elem(element):
return  Str(""  %  element)
def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)		 def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)
def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)		 def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)


Clone # 11
Anti-unification distance between two trees = 3
Total size of two trees = 178
Total length of sequences = 44
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 155		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 160
simple_elem("DateOfElectronicPublication") simple_elem("DateOfElectronicPublication")
simple_elem("ISOAbbreviation") simple_elem("ISOAbbreviation")
simple_elem("Coden") simple_elem("Coden")
simple_elem("Issue") simple_elem("Issue")
group_elem("JournalIssue",  Opt(Volume)  +  Opt(Issue)  +  PubDate) group_elem("JournalIssue",  Opt(Volume)  +  Opt(Issue)  +  PubDate)
simple_elem("ISSN") simple_elem("ISSN")
group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)		 group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)
simple_elem("GrantID") simple_elem("GrantID")
simple_elem("Acronym") simple_elem("Acronym")
simple_elem("Agency") simple_elem("Agency")
group_elem("Grant",  GrantID  +  Opt(Acronym)  +  Opt(Agency)) group_elem("Grant",  Opt(GrantID)  +  Opt(Acronym)  +  Opt(Agency))
group_elem("GrantList",  Rep1(Grant),  "CompleteYN") group_elem("GrantList",  Rep1(Grant),  "CompleteYN")
simple_elem("AccessionNumber") simple_elem("AccessionNumber")
group_elem("AccessionNumberList",  Rep1(AccessionNumber)) group_elem("AccessionNumberList",  Rep1(AccessionNumber))
simple_elem("DataBankName") simple_elem("DataBankName")
group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList)) group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList))
group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN") group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN")
group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)		 group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)
group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo)) group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo))
simple_elem("MedlineID") simple_elem("MedlineID")
simple_elem("Note") simple_elem("Note")
simple_elem("RefSource") simple_elem("RefSource")


Clone # 12
Anti-unification distance between two trees = 0
Total size of two trees = 164
Total length of sequences = 54
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 128		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 144
group_elem("MeshHeadingList",  Rep1(MeshHeading)) group_elem("MeshHeadingList",  Rep1(MeshHeading))
simple_elem("MedlinePgn") simple_elem("MedlinePgn")
simple_elem("EndPage") simple_elem("EndPage")
simple_elem("StartPage") simple_elem("StartPage")
group_elem("Pagination",
Alt(StartPage  +  Opt(EndPage)  +  Opt(MedlinePgn),  MedlinePgn))		 group_elem("Pagination",
Alt(StartPage  +  Opt(EndPage)  +  Opt(MedlinePgn),  MedlinePgn))
simple_elem("Affiliation") simple_elem("Affiliation")
group_elem("Author",  author_name  +  Opt(Affiliation)) group_elem("Author",  author_name  +  Opt(Affiliation))
group_elem("AuthorList",  Rep1(Author),  "CompleteYN") group_elem("AuthorList",  Rep1(Author),  "CompleteYN")
simple_elem("Language") simple_elem("Language")
simple_elem("PublicationType") simple_elem("PublicationType")
group_elem("PublicationTypeList",  Rep1(PublicationType)) group_elem("PublicationTypeList",  Rep1(PublicationType))
simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions
simple_elem("Volume")          #  will  be  before  Book. simple_elem("Volume")          #  will  be  before  Book.
simple_elem("VernacularTitle") simple_elem("VernacularTitle")
simple_elem("CollectionTitle") simple_elem("CollectionTitle")
simple_elem("ArticleTitle") simple_elem("ArticleTitle")
simple_elem("Publisher") simple_elem("Publisher")
group_elem("PubDate",  pub_date) group_elem("PubDate",  pub_date)
group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))		 group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))
simple_elem("Country") simple_elem("Country")
simple_elem("MedlineTA") simple_elem("MedlineTA")
simple_elem("MedlineCode") simple_elem("MedlineCode")
group_elem("MedlineJournalInfo",
Opt(Country)  +  MedlineTA  +  Opt(MedlineCode)  +  Opt(NlmUniqueID))		 group_elem("MedlineJournalInfo",
Opt(Country)  +  MedlineTA  +  Opt(MedlineCode)  +  Opt(NlmUniqueID))
simple_elem("DateOfElectronicPublication") simple_elem("DateOfElectronicPublication")
simple_elem("ISOAbbreviation") simple_elem("ISOAbbreviation")
simple_elem("Coden") simple_elem("Coden")
simple_elem("Issue") simple_elem("Issue")


Clone # 13
Anti-unification distance between two trees = 4
Total size of two trees = 158
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 133		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 78
class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  ValueError,  "I  expected  a  file  handle  or  file-like  object"
self._uhandle  =  SGMLHandle(  File.UndoHandle(  handle  )  )
self._parser  =  parser
def  next(self):
lines  =  []
first_tag  =  'Recognition  Sequence'
while  1:
line  =  self._uhandle.readline()
if  not  line:
break
if  line[:len(  first_tag  )]  ==  'first_tag':
self._uhandle.saveline(line)
break
if  not  line:
return  None
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  ValueError,  "I  expected  a  file  handle  or  file-like  object"
self._uhandle  =  SGMLHandle(  File.UndoHandle(  handle  )  )
self._parser  =  parser
def  next(self):
lines  =  []
first_tag  =  'Recognition  Sequence'
while  1:
line  =  self._uhandle.readline()
if  not  line:
break
if  line[:len(  first_tag  )]  ==  'first_tag':
self._uhandle.saveline(line)
break
if  not  line:
return  None
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)
class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)		 class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)


Clone # 14
Anti-unification distance between two trees = 3
Total size of two trees = 150
Total length of sequences = 34
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 160		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 176
simple_elem("ISSN") simple_elem("ISSN")
group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)		 group_elem("Journal",
Opt(ISSN)  +  \
JournalIssue  +  \
Opt(Coden)  +  \
Opt(Title)  +  \
Opt(ISOAbbreviation)
simple_elem("GrantID") simple_elem("GrantID")
simple_elem("Acronym") simple_elem("Acronym")
simple_elem("Agency") simple_elem("Agency")
group_elem("Grant",  GrantID  +  Opt(Acronym)  +  Opt(Agency)) group_elem("Grant",  Opt(GrantID)  +  Opt(Acronym)  +  Opt(Agency))
group_elem("GrantList",  Rep1(Grant),  "CompleteYN") group_elem("GrantList",  Rep1(Grant),  "CompleteYN")
simple_elem("AccessionNumber") simple_elem("AccessionNumber")
group_elem("AccessionNumberList",  Rep1(AccessionNumber)) group_elem("AccessionNumberList",  Rep1(AccessionNumber))
simple_elem("DataBankName") simple_elem("DataBankName")
group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList)) group_elem("DataBank",  DataBankName  +  Opt(AccessionNumberList))
group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN") group_elem("DataBankList",  Rep1(DataBank),  "CompleteYN")
group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)		 group_elem("Article",
Alt(Journal,  Book)  +  \
ArticleTitle  +  \
Pagination  +  \
Opt(Abstract)  +  \
Opt(Affiliation)  +  \
Opt(AuthorList)  +  \
Rep1(Language)  +  \
Opt(DataBankList)  +  \
Opt(GrantList)  +  \
PublicationTypeList  +  \
Opt(VernacularTitle)  +  \
Opt(DateOfElectronicPublication)
group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo)) group_elem("NCBIArticle",  PMID  +  Article  +  Opt(MedlineJournalInfo))
simple_elem("MedlineID") simple_elem("MedlineID")
simple_elem("Note") simple_elem("Note")
simple_elem("RefSource") simple_elem("RefSource")


Clone # 15
Anti-unification distance between two trees = 0
Total size of two trees = 146
Total length of sequences = 22
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 297		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 304
space  =  Any("  \t") space  =  Any("  \t")
DeleteCitation_start  =  Rep(space)  +  Str("")  +  AnyEol() DeleteCitation_start  =  Rep(space)  +  Str("")  +  AnyEol()
DeleteCitation_end  =  Rep(space)  +  Str("")  +  AnyEol() DeleteCitation_end  =  Rep(space)  +  Str("")  +  AnyEol()
MedlineCitationSet_end  =  Str("")  +  Opt(AnyEol()) MedlineCitationSet_end  =  Str("")  +  Opt(AnyEol())
group_elem("DeleteCitation",  Alt(Rep1(MedlineID),  Rep1(PMID))) group_elem("DeleteCitation",  Alt(Rep1(MedlineID),  Rep1(PMID)))
group_elem("MedlineCitationSet",  Rep(MedlineCitation)  +  Opt(DeleteCitation)) group_elem("MedlineCitationSet",  Rep(MedlineCitation)  +  Opt(DeleteCitation))
DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol() DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol()
citation_format  =  MedlineCitation citation_format  =  MedlineCitation
header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start) header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start)
footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end
format  =  HeaderFooter(
None,  {},
header_format,  RecordReader.CountLines,  (4,),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),		 format  =  HeaderFooter(
None,  {},
header_format,  RecordReader.CountLines,  (4,),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),


Clone # 16
Anti-unification distance between two trees = 2
Total size of two trees = 146
Total length of sequences = 22
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 297		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 291
space  =  Any("  \t") space  =  Any("  \t")
DeleteCitation_start  =  Rep(space)  +  Str("")  +  AnyEol() DeleteCitation_start  =  Rep(space)  +  Str("")  +  AnyEol()
DeleteCitation_end  =  Rep(space)  +  Str("")  +  AnyEol() DeleteCitation_end  =  Rep(space)  +  Str("")  +  AnyEol()
MedlineCitationSet_end  =  Str("")  +  Opt(AnyEol()) MedlineCitationSet_end  =  Str("")  +  Opt(AnyEol())
group_elem("DeleteCitation",  Alt(Rep1(MedlineID),  Rep1(PMID))) group_elem("DeleteCitation",  Alt(Rep1(MedlineID),  Rep1(PMID)))
group_elem("MedlineCitationSet",  Rep(MedlineCitation)  +  Opt(DeleteCitation)) group_elem("MedlineCitationSet",  Rep(MedlineCitation)  +  Opt(DeleteCitation))
DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol() DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol()
citation_format  =  MedlineCitation citation_format  =  MedlineCitation
header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start) header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start)
footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end
format  =  HeaderFooter(
None,  {},
header_format,  RecordReader.CountLines,  (4,),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),		 format  =  HeaderFooter(
None,  {},
header_format,  RecordReader.Until,  ("Citation>",),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),


Clone # 17
Anti-unification distance between two trees = 2
Total size of two trees = 146
Total length of sequences = 22
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 304		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 291
space  =  Any("  \t") space  =  Any("  \t")
DeleteCitation_start  =  Rep(space)  +  Str("")  +  AnyEol() DeleteCitation_start  =  Rep(space)  +  Str("")  +  AnyEol()
DeleteCitation_end  =  Rep(space)  +  Str("")  +  AnyEol() DeleteCitation_end  =  Rep(space)  +  Str("")  +  AnyEol()
MedlineCitationSet_end  =  Str("")  +  Opt(AnyEol()) MedlineCitationSet_end  =  Str("")  +  Opt(AnyEol())
group_elem("DeleteCitation",  Alt(Rep1(MedlineID),  Rep1(PMID))) group_elem("DeleteCitation",  Alt(Rep1(MedlineID),  Rep1(PMID)))
group_elem("MedlineCitationSet",  Rep(MedlineCitation)  +  Opt(DeleteCitation)) group_elem("MedlineCitationSet",  Rep(MedlineCitation)  +  Opt(DeleteCitation))
DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol() DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol()
citation_format  =  MedlineCitation citation_format  =  MedlineCitation
header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start) header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start)
footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end
format  =  HeaderFooter(
None,  {},
header_format,  RecordReader.CountLines,  (4,),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),		 format  =  HeaderFooter(
None,  {},
header_format,  RecordReader.Until,  ("Citation>",),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),


Clone # 18
Anti-unification distance between two trees = 0
Total size of two trees = 146
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 24		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 28
def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start		 def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start
def  _end_elem(element):
return  Str(""  %  element)		 def  _end_elem(element):
return  Str(""  %  element)
def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)		 def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)
def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)		 def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)


Clone # 19
Anti-unification distance between two trees = 0
Total size of two trees = 146
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 25		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 28
def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start		 def  _start_elem(element,  *attrs):
if  attrs:
attr_groups  =  []
for  attr  in  attrs:
group  =  Str(attr)  +  Str("=")  +  \
Str('"')  +  Group(attr,  Re(r'[^<&"]+'))  +  Str('"')
attr_groups.append(group)
start  =  Str("<")  +  Str(element)  +  \
Rep(Str("  ")  +  Alt(*attr_groups))  +  \
Str(">")
start  =  Str("<%s>"  %  element)
return  start
def  _end_elem(element):
return  Str(""  %  element)		 def  _end_elem(element):
return  Str(""  %  element)
def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)		 def  simple_elem(element,  *attrs):
start,  end  =  _start_elem(element,  *attrs),  _end_elem(element)
group_name  =  element
group_expression  =  Re(r"[^<]+")
expr  =  start  +  \
Group(group_name,  group_expression)  +  \
end  +  \
AnyEol()
setattr(self,  element,  expr)
def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)		 def  group_elem(element,  expr,  *attrs):
start_name,  end_name  =  "%s_start"  %  element,  "%s_end"  %  element
start_expr  =  getattr(self,  start_name,  None)
if  start_expr  is  None:
start_expr  =  _start_elem(element,  *attrs)  +  AnyEol()
setattr(self,  start_name,  start_expr)
end_expr  =  getattr(self,  end_name,  None)
if  end_expr  is  None:
end_expr  =  _end_elem(element)  +  AnyEol()
setattr(self,  end_name,  end_expr)
group_expr  =  start_expr  +  expr  +  end_expr
group_expr  =  Group(element,  group_expr)
setattr(self,  element,  group_expr)


Clone # 20
Anti-unification distance between two trees = 3
Total size of two trees = 142
Total length of sequences = 22
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 224		Source file "/home/peter/clone_digger/biopython-1.44/Bio/PubMed.py"
The first line is 39
def  __init__(self,  delay=5.0,  parser=None):
self.parser  =  parser
self.limiter  =  RequestLimiter(delay)		 def  __init__(self,  delay=5.0,  parser=None):
self.parser  =  parser
self.limiter  =  RequestLimiter(delay)
def  __len__(self):
raise  NotImplementedError,  "SwissProt  contains  lots  of  entries"		 def  __len__(self):
raise  NotImplementedError,  "PubMed  contains  lots  of  entries"
def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."		 def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."
def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1		 def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1
def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"		 def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"


Clone # 21
Anti-unification distance between two trees = 2
Total size of two trees = 142
Total length of sequences = 22
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 224		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 271
def  __init__(self,  delay=5.0,  parser=None):
self.parser  =  parser
self.limiter  =  RequestLimiter(delay)		 def  __init__(self,  delay=5.0,  parser=None):
self.parser  =  parser
self.limiter  =  RequestLimiter(delay)
def  __len__(self):
raise  NotImplementedError,  "SwissProt  contains  lots  of  entries"		 def  __len__(self):
raise  NotImplementedError,  "Prosite  contains  lots  of  entries"
def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."		 def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."
def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1		 def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1
def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"		 def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"


Clone # 22
Anti-unification distance between two trees = 3
Total size of two trees = 142
Total length of sequences = 22
Source file "/home/peter/clone_digger/biopython-1.44/Bio/PubMed.py"
The first line is 39		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 271
def  __init__(self,  delay=5.0,  parser=None):
self.parser  =  parser
self.limiter  =  RequestLimiter(delay)		 def  __init__(self,  delay=5.0,  parser=None):
self.parser  =  parser
self.limiter  =  RequestLimiter(delay)
def  __len__(self):
raise  NotImplementedError,  "PubMed  contains  lots  of  entries"		 def  __len__(self):
raise  NotImplementedError,  "Prosite  contains  lots  of  entries"
def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."		 def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."
def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1		 def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1
def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"		 def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"


Clone # 23
Anti-unification distance between two trees = 1
Total size of two trees = 138
Total length of sequences = 42
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 236		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 253
simple_elem("NumberOfReferences") simple_elem("NumberOfReferences")
group_elem("PersonalNameSubject",  personal_name) group_elem("PersonalNameSubject",  personal_name)
group_elem("PersonalNameSubjectList",  Rep1(PersonalNameSubject)) group_elem("PersonalNameSubjectList",  Rep1(PersonalNameSubject))
simple_elem("GeneSymbol") simple_elem("GeneSymbol")
group_elem("GeneSymbolList",  Rep1(GeneSymbol)) group_elem("GeneSymbolList",  Rep1(GeneSymbol))
simple_elem("NameOfSubstance") simple_elem("NameOfSubstance")
simple_elem("CASRegistryNumber") simple_elem("RegistryNumber")
group_elem("Chemical",  CASRegistryNumber  +  NameOfSubstance) group_elem("Chemical",  RegistryNumber  +  NameOfSubstance)
group_elem("ChemicalList",  Rep1(Chemical)) group_elem("ChemicalList",  Rep1(Chemical))
simple_elem("CitationSubset") simple_elem("CitationSubset")
simple_elem("GeneralNote",  "Owner") simple_elem("GeneralNote",  "Owner")
group_elem("Investigator",  personal_name  +  Opt(Affiliation)) group_elem("Investigator",  personal_name  +  Opt(Affiliation))
group_elem("InvestigatorList",  Rep1(Investigator)) group_elem("InvestigatorList",  Rep1(Investigator))
simple_elem("OtherID",  "Source") simple_elem("OtherID",  "Source")
simple_elem("SpaceFlightMission") simple_elem("SpaceFlightMission")
simple_elem("Keyword",  "MajorTopicYN") simple_elem("Keyword",  "MajorTopicYN")
group_elem("KeywordList",  Rep1(Keyword),  "Owner") group_elem("KeywordList",  Rep1(Keyword),  "Owner")
group_elem("OtherAbstract",
AbstractText  +  Opt(CopyrightInformation),
"Type")		 group_elem("OtherAbstract",
AbstractText  +  Opt(CopyrightInformation),
"Type")
group_elem("DateRevised",  normal_date) group_elem("DateRevised",  normal_date)
group_elem("DateCompleted",  normal_date) group_elem("DateCompleted",  normal_date)
group_elem("DateCreated",  normal_date) group_elem("DateCreated",  normal_date)


Clone # 24
Anti-unification distance between two trees = 0
Total size of two trees = 120
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 318		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 267
ls  =  line.split() ls  =  line.split()
self.data._add_diagram_for_sequence(ls[1],  self._current_seq) self.data._add_diagram_for_sequence(ls[1],  self._current_seq)
ds  =  ls[1].split('_') ds  =  ls[1].split('_')
i  =  0 i  =  0
start  =  0 start  =  0
for  i  in  range(0,len(ds)):
if  ds[i].find('[')  !=  -1  or  ds[i].find('<')  !=  -1:
inst  =  Motif.Instance()
inst._seqname  (self._current_seq)
inst._start  (start)
r  =  re.compile('\d+')
mn  =  r.findall(ds[i])[0]
if  ds[i].find('-')  !=  -1:
inst.strand  =  '-'
inst.strand  =  '+'
motif  =  self.data.get_motif_by_name(mn)
motif.add_instance(inst)
start  +=  motif.length
start  +=  int(ds[i])		 for  i  in  range(0,len(ds)):
if  ds[i].find('[')  !=  -1  or  ds[i].find('<')  !=  -1:
inst  =  Motif.Instance()
inst._seqname  (self._current_seq)
inst._start  (start)
r  =  re.compile('\d+')
mn  =  r.findall(ds[i])[0]
if  ds[i].find('-')  !=  -1:
inst.strand  =  '-'
inst.strand  =  '+'
motif  =  self.data.get_motif_by_name(mn)
motif.add_instance(inst)
start  +=  motif.length
start  +=  int(ds[i])


Clone # 25
Anti-unification distance between two trees = 3
Total size of two trees = 120
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1164		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 927
def  catalyse(self,  dna,  linear=True)  :
r  =  self.search(dna,  linear)
d  =  self.dna
if  not  r  :  return  d[1:],
fragments  =  []
length  =  len(r)-1
if  d.is_linear()  :
fragments.append(d[1:r[0]])
if  length  :
fragments  +=  [d[r[x]:r[x+1]]  for  x  in  xrange(length)]
fragments.append(d[r[-1]:])
fragments.append(d[r[-1]:]+d[1:r[0]])
if  not  length:
return  tuple(fragments)
fragments  +=  [d[r[x]:r[x+1]]  for  x  in  xrange(length)]
return  tuple(fragments)		 def  catalyse(self,  dna,  linear=True)  :
r  =  self.search(dna,  linear)
d  =  self.dna
if  not  r  :  return  d[1:],
fragments  =  []
length  =  len(r)-1
if  d.is_linear()  :
fragments.append(d[1:r[0]])
if  length  :
fragments  +=  [d[r[x]:r[x+1]]  for  x  in  xrange(length)]
fragments.append(d[r[-1]:])
fragments.append(d[r[-1]:]+d[1:r[0]])
if  not  length:
return  tuple(fragments)
fragments  +=  [d[r[x]:r[x+1]]  for  x  in  xrange(length)]
return  tuple(fragments)
catalyze  =  catalyse  =  classmethod(catalyse) catalyze  =  catalyse  =  classmethod(catalyse)
def  is_blunt(self)  :
return  False		 def  is_blunt(self)  :
return  True
is_blunt  =  classmethod(is_blunt) is_blunt  =  classmethod(is_blunt)
def  is_5overhang(self)  :
return  False		 def  is_5overhang(self)  :
return  False
is_5overhang  =  classmethod(is_5overhang) is_5overhang  =  classmethod(is_5overhang)
def  is_3overhang(self)  :
return  True		 def  is_3overhang(self)  :
return  False
is_3overhang  =  classmethod(is_3overhang) is_3overhang  =  classmethod(is_3overhang)
def  overhang(self)  :
return  "3' &nbsp;overhang"		 def  overhang(self)  :
return  'blunt'
overhang  =  classmethod(overhang) overhang  =  classmethod(overhang)


Clone # 26
Anti-unification distance between two trees = 2
Total size of two trees = 118
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1302		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 284
def  __len__(self):
raise  NotImplementedError,  "GenBank  contains  lots  of  entries"		 def  __len__(self):
raise  NotImplementedError,  "Prosite  contains  lots  of  entries"
def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."		 def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."
def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1		 def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1
def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"		 def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"


Clone # 27
Anti-unification distance between two trees = 2
Total size of two trees = 118
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1302		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 237
def  __len__(self):
raise  NotImplementedError,  "GenBank  contains  lots  of  entries"		 def  __len__(self):
raise  NotImplementedError,  "SwissProt  contains  lots  of  entries"
def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."		 def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."
def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1		 def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1
def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"		 def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"


Clone # 28
Anti-unification distance between two trees = 1
Total size of two trees = 118
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1302		Source file "/home/peter/clone_digger/biopython-1.44/Bio/PubMed.py"
The first line is 52
def  __len__(self):
raise  NotImplementedError,  "GenBank  contains  lots  of  entries"		 def  __len__(self):
raise  NotImplementedError,  "PubMed  contains  lots  of  entries"
def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."		 def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."
def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1		 def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1
def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"		 def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"


Clone # 29
Anti-unification distance between two trees = 2
Total size of two trees = 118
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1302		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 172
def  __len__(self):
raise  NotImplementedError,  "GenBank  contains  lots  of  entries"		 def  __len__(self):
raise  NotImplementedError,  "Prodoc  contains  lots  of  entries"
def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."		 def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."
def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1		 def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1
def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"		 def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"


Clone # 30
Anti-unification distance between two trees = 1
Total size of two trees = 118
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 284		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 172
def  __len__(self):
raise  NotImplementedError,  "Prosite  contains  lots  of  entries"		 def  __len__(self):
raise  NotImplementedError,  "Prodoc  contains  lots  of  entries"
def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."		 def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."
def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1		 def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1
def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"		 def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"


Clone # 31
Anti-unification distance between two trees = 1
Total size of two trees = 118
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 172
def  __len__(self):
raise  NotImplementedError,  "SwissProt  contains  lots  of  entries"		 def  __len__(self):
raise  NotImplementedError,  "Prodoc  contains  lots  of  entries"
def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."		 def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."
def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1		 def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1
def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"		 def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"


Clone # 32
Anti-unification distance between two trees = 2
Total size of two trees = 118
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/PubMed.py"
The first line is 52		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 172
def  __len__(self):
raise  NotImplementedError,  "PubMed  contains  lots  of  entries"		 def  __len__(self):
raise  NotImplementedError,  "Prodoc  contains  lots  of  entries"
def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  clear(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  __setitem__(self,  key,  item):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"		 def  update(self):
raise  NotImplementedError,  "This  is  a  read-only  dictionary"
def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."		 def  copy(self):
raise  NotImplementedError,  "You  don't  need  to  do  this..."
def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  keys(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  items(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."		 def  values(self):
raise  NotImplementedError,  "You  don't  really  want  to  do  this..."
def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1		 def  has_key(self,  id):
try:
self[id]
except  KeyError:
return  0
return  1
def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"		 def  get(self,  id,  failobj=None):
try:
return  self[id]
except  KeyError:
return  failobj
raise  "How  did  I  get  here?"


Clone # 33
Anti-unification distance between two trees = 4
Total size of two trees = 112
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 284		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 279
def  feature_location(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location",  expr)		 def  feature_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_name",  expr)
_settag(feature_location,  NS  +  "feature_location") _settag(feature_name,  NS  +  "feature_name")
def  feature_location_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_start",  expr)		 def  feature_location(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location",  expr)
_settag(feature_location_start,  NS  +  "feature_location_start") _settag(feature_location,  NS  +  "feature_location")
def  feature_location_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_end",  expr)		 def  feature_location_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_start",  expr)
_settag(feature_location_end,  NS  +  "feature_location_end") _settag(feature_location_start,  NS  +  "feature_location_start")
def  feature_description(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_description",  expr)		 def  feature_location_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_end",  expr)
_settag(feature_description,  NS  +  "feature_description") _settag(feature_location_end,  NS  +  "feature_location_end")


Clone # 34
Anti-unification distance between two trees = 1
Total size of two trees = 112
Total length of sequences = 24
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 100		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 101
author_name  =  Alt(personal_name,  CollectiveName) author_name  =  Alt(personal_name,  CollectiveName)
elements  =  [
"Year",  "Month",  "Day",
"Season",  "MedlineDate",
"Hour",  "Minute",  "Second"		 elements  =  [
"Year",  "Month",  "Day",
"Season",  "MedlineDate",
"Hour",  "Minute",  "Second"
[simple_elem(e)  for  e  in  elements] [simple_elem(e)  for  e  in  elements]
normal_date  =  Year  +  Month  +  Day  +  \
Opt(Hour  +  Opt(Minute  +  Opt(Second)))		 normal_date  =  Year  +  Month  +  Day  +  \
Opt(Hour  +  Opt(Minute  +  Opt(Second)))
pub_date  =  Alt((Year  +  Opt(Alt((Month  +  Opt(Day)),  Season))),  MedlineDate) pub_date  =  Alt((Year  +  Opt(Alt((Month  +  Opt(Day)),  Season))),  MedlineDate)
simple_elem("CopyrightInformation") simple_elem("CopyrightInformation")
simple_elem("AbstractText") simple_elem("AbstractText")
group_elem("Abstract",  AbstractText  +  Opt(CopyrightInformation)) group_elem("Abstract",  AbstractText  +  Opt(CopyrightInformation))
simple_elem("NlmUniqueID") simple_elem("NlmUniqueID")
simple_elem("PMID") simple_elem("PMID")
simple_elem("SubHeading",  "MajorTopicYN") simple_elem("SubHeading",  "MajorTopicYN")
simple_elem("Descriptor",  "MajorTopicYN") simple_elem("QualifierName",  "MajorTopicYN")


Clone # 35
Anti-unification distance between two trees = 1
Total size of two trees = 110
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 333		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 167
class  RecordParser(AbstractParser):
def  __init__(self):
self._scanner  =  _Scanner()
self._consumer  =  _RecordConsumer()
def  parse(self,  handle):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
self._scanner.feed(uhandle,  self._consumer)
return  self._consumer.unigene_record		 class  RecordParser(AbstractParser):
def  __init__(self):
self._scanner  =  _Scanner()
self._consumer  =  _RecordConsumer()
def  parse(self,  handle):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
self._scanner.feed(uhandle,  self._consumer)
return  self._consumer.enzyme_record
class  Iterator:
def  __init__(self,  handle,  parser=None):
self._uhandle  =  File.UndoHandle(handle)
def  next(self):
self._parser  =  RecordParser()
lines  =  []
while  1:
line  =  self._uhandle.readline()
if  not  line:  break
if  line[:2]  ==  '//':
break
lines.append(line)
if  not  lines:
return  None
lines.append('//')
data  =  string.join(lines,'')
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser=None):
self._uhandle  =  File.UndoHandle(handle)
def  next(self):
self._parser  =  RecordParser()
lines  =  []
while  1:
line  =  self._uhandle.readline()
if  not  line:  break
if  line[:2]  ==  '//':
break
lines.append(line)
if  not  lines:
return  None
lines.append('//')
data  =  string.join(lines,'')
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)


Clone # 36
Anti-unification distance between two trees = 3
Total size of two trees = 110
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1425
def  _drop(self)  :
length  =  len(self.dna)
drop  =  itertools.dropwhile
take  =  itertools.takewhile
if  self.dna.is_linear()  :
self.results  =  [x  for  x  in  drop(lambda  x:x<1,  self.results)]
self.results  =  [x  for  x  in  take(lambda  x:x for  index,  location  in  enumerate(self.results)  :
if  location  <  1  :
self.results[index]  +=  length
break
for  index,  location  in  enumerate(self.results[::-1])  :
if  location  >  length  :
self.results[-(index+1)]  -=  length
break
return		 def  _drop(self)  :
length  =  len(self.dna)
drop  =  itertools.dropwhile
take  =  itertools.takewhile
if  self.dna.is_linear()  :
self.results  =  [x  for  x  in  drop(lambda  x  :  x  <  1,  self.results)]
self.results  =  [x  for  x  in  take(lambda  x  :  x   for  index,  location  in  enumerate(self.results)  :
if  location  <  1  :
self.results[index]  +=  length
break
for  index,  location  in  enumerate(self.results[::-1])  :
if  location  >  length  :
self.results[-(index+1)]  -=  length
break
return
_drop  =  classmethod(_drop) _drop  =  classmethod(_drop)
def  is_defined(self)  :
return  True		 def  is_defined(self)  :
return  False
is_defined  =  classmethod(is_defined) is_defined  =  classmethod(is_defined)
def  is_ambiguous(self)  :
return  False		 def  is_ambiguous(self)  :
return  True
is_ambiguous  =  classmethod(is_ambiguous) is_ambiguous  =  classmethod(is_ambiguous)
def  is_unknown(self)  :
return  False		 def  is_unknown(self)  :
return  False
is_unknown  =  classmethod(is_unknown) is_unknown  =  classmethod(is_unknown)


Clone # 37
Anti-unification distance between two trees = 4
Total size of two trees = 106
Total length of sequences = 22
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1209		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1090
catalyze  =  catalyse  =  classmethod(catalyse) catalyze  =  catalyse  =  classmethod(catalyse)
def  is_blunt(self)  :
return  False		 def  is_blunt(self)  :
return  False
is_blunt  =  classmethod(is_blunt) is_blunt  =  classmethod(is_blunt)
def  is_5overhang(self)  :
return  False		 def  is_5overhang(self)  :
return  True
is_5overhang  =  classmethod(is_5overhang) is_5overhang  =  classmethod(is_5overhang)
def  is_3overhang(self)  :
return  True		 def  is_3overhang(self)  :
return  False
is_3overhang  =  classmethod(is_3overhang) is_3overhang  =  classmethod(is_3overhang)
def  overhang(self)  :
return  "3'  overhang"		 def  overhang(self)  :
return  "5'  overhang"
overhang  =  classmethod(overhang) overhang  =  classmethod(overhang)
def  compatible_end(self,  batch=None)  :
if  not  batch  :  batch  =  AllEnzymes
r  =  [x  for  x  in  iter(AllEnzymes)  if  x.is_3overhang()  and  x  %  self]
r.sort()
return  r		 def  compatible_end(self,  batch=None)  :
if  not  batch  :  batch  =  AllEnzymes
r  =  [x  for  x  in  iter(AllEnzymes)  if  x.is_5overhang()  and  x  %  self]
r.sort()
return  r
compatible_end  =  classmethod(compatible_end) compatible_end  =  classmethod(compatible_end)


Clone # 38
Anti-unification distance between two trees = 2
Total size of two trees = 105
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 129		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 184
__filename_key  =  '__filename' __filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser		 def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[self.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)		 def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data		 def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)		 def  __getattr__(self,  name):
return  getattr(self._index,  name)


Clone # 39
Anti-unification distance between two trees = 2
Total size of two trees = 105
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 184		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 184
__filename_key  =  '__filename' __filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser		 def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[self.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)		 def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data		 def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)		 def  __getattr__(self,  name):
return  getattr(self._index,  name)


Clone # 40
Anti-unification distance between two trees = 2
Total size of two trees = 105
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 184
__filename_key  =  '__filename' __filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser		 def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[self.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)		 def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data		 def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)		 def  __getattr__(self,  name):
return  getattr(self._index,  name)


Clone # 41
Anti-unification distance between two trees = 2
Total size of two trees = 105
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 124		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 184
__filename_key  =  '__filename' __filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser		 def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[self.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)		 def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data		 def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)		 def  __getattr__(self,  name):
return  getattr(self._index,  name)


Clone # 42
Anti-unification distance between two trees = 4
Total size of two trees = 104
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 964		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 939
charpartition={} taxpartition={}
quotelevel=False quotelevel=False
opts=CharBuffer(options) opts=CharBuffer(options)
name=self._name_n_vector(opts) name=self._name_n_vector(opts)
if  not  name:
raise  NexusError,  'Formatting  error  in  charpartition:  %s  '  %  options		 if  not  name:
raise  NexusError,  'Formatting  error  in  taxpartition:  %s  '  %  options
sub='' sub=''
while  True:
w=opts.next()
if  w  is  None  or  (w==','  and  not  quotelevel):
subname,subindices=self._get_indices(sub,set_type=CHARSET,separator=':')
charpartition[subname]=_make_unique(subindices)
sub=''
if  w  is  None:
break
if  w=="'":
quotelevel=not  quotelevel
sub+=w		 while  True:
w=opts.next()
if  w  is  None  or  (w==','  and  not  quotelevel):
subname,subindices=self._get_indices(sub,set_type=TAXSET,separator=':')
taxpartition[subname]=_make_unique(subindices)
sub=''
if  w  is  None:
break
if  w=="'":
quotelevel=not  quotelevel
sub+=w
self.charpartitions[name]=charpartition self.taxpartitions[name]=taxpartition


Clone # 43
Anti-unification distance between two trees = 4
Total size of two trees = 102
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 44
Anti-unification distance between two trees = 3
Total size of two trees = 102
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 45
Anti-unification distance between two trees = 4
Total size of two trees = 102
Total length of sequences = 28
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 243		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 249
group_elem("Chemical",  CASRegistryNumber  +  NameOfSubstance) group_elem("Chemical",  Alt(CASRegistryNumber,  RegistryNumber)  +  \
NameOfSubstance)
group_elem("ChemicalList",  Rep1(Chemical)) group_elem("ChemicalList",  Rep1(Chemical))
simple_elem("CitationSubset") simple_elem("CitationSubset")
simple_elem("GeneralNote",  "Owner") simple_elem("GeneralNote",  "Owner")
group_elem("Investigator",  personal_name  +  Opt(Affiliation)) group_elem("Investigator",  personal_name  +  Opt(Affiliation))
group_elem("InvestigatorList",  Rep1(Investigator)) group_elem("InvestigatorList",  Rep1(Investigator))
simple_elem("OtherID",  "Source") simple_elem("OtherID",  "Source")
simple_elem("SpaceFlightMission") simple_elem("SpaceFlightMission")
simple_elem("Keyword",  "MajorTopicYN") simple_elem("Keyword",  "MajorTopicYN")
group_elem("KeywordList",  Rep1(Keyword),  "Owner") group_elem("KeywordList",  Rep1(Keyword),  "Owner")
group_elem("OtherAbstract",
AbstractText  +  Opt(CopyrightInformation),
"Type")		 group_elem("OtherAbstract",
AbstractText  +  Opt(CopyrightInformation),
"Type")
group_elem("DateRevised",  normal_date) group_elem("DateRevised",  normal_date)
group_elem("DateCompleted",  normal_date) group_elem("DateCompleted",  normal_date)
group_elem("DateCreated",  normal_date) group_elem("DateCreated",  normal_date)


Clone # 46
Anti-unification distance between two trees = 1
Total size of two trees = 102
Total length of sequences = 22
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 105		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 117
elements  =  [
"Year",  "Month",  "Day",
"Season",  "MedlineDate",
"Hour",  "Minute",  "Second"		 elements  =  [
"Year",  "Month",  "Day",
"Season",  "MedlineDate",
"Hour",  "Minute",  "Second"
[simple_elem(e)  for  e  in  elements] [simple_elem(e)  for  e  in  elements]
normal_date  =  Year  +  Month  +  Day  +  \
Opt(Hour  +  Opt(Minute  +  Opt(Second)))		 normal_date  =  Year  +  Month  +  Day  +  \
Opt(Hour  +  Opt(Minute  +  Opt(Second)))
pub_date  =  Alt((Year  +  Opt(Alt((Month  +  Opt(Day)),  Season))),  MedlineDate) pub_date  =  Alt((Year  +  Opt(Alt((Month  +  Opt(Day)),  Season))),  MedlineDate)
simple_elem("CopyrightInformation") simple_elem("CopyrightInformation")
simple_elem("AbstractText") simple_elem("AbstractText")
group_elem("Abstract",  AbstractText  +  Opt(CopyrightInformation)) group_elem("Abstract",  AbstractText  +  Opt(CopyrightInformation))
simple_elem("NlmUniqueID") simple_elem("NlmUniqueID")
simple_elem("PMID") simple_elem("PMID")
simple_elem("SubHeading",  "MajorTopicYN") simple_elem("SubHeading",  "MajorTopicYN")
simple_elem("Descriptor",  "MajorTopicYN") simple_elem("QualifierName",  "MajorTopicYN")


Clone # 47
Anti-unification distance between two trees = 4
Total size of two trees = 100
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 48
Anti-unification distance between two trees = 4
Total size of two trees = 100
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 49
Anti-unification distance between two trees = 0
Total size of two trees = 100
Total length of sequences = 22
Source file "/home/peter/clone_digger/biopython-1.44/Bio/NetCatch.py"
The first line is 203		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NetCatch.py"
The first line is 188
base_path  =    self.base_path base_path  =    self.base_path
name  =  '%s.htm'  %  self._labels[  index  ] name  =  '%s.htm'  %  self._labels[  index  ]
full_path  =  os.path.join(  base_path,  name  ) full_path  =  os.path.join(  base_path,  name  )
out_handle  =  open(  full_path  ,  "wb"  ) out_handle  =  open(  full_path  ,  "wb"  )
label  =  self._labels[  index  ] label  =  self._labels[  index  ]
url  =  self._urls[  label  ] url  =  self._urls[  label  ]
url_handle  =  url_opener.open(  url  ) url_handle  =  url_opener.open(  url  )
contents  =  url_handle.read() contents  =  url_handle.read()
out_handle.write(  contents  ) out_handle.write(  contents  )
url_opener.close(  ) url_opener.close(  )
out_handle.close(  ) out_handle.close(  )


Clone # 50
Anti-unification distance between two trees = 0
Total size of two trees = 100
Total length of sequences = 34
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 135		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 135
simple_elem("Affiliation") simple_elem("Affiliation")
group_elem("Author",  author_name  +  Opt(Affiliation)) group_elem("Author",  author_name  +  Opt(Affiliation))
group_elem("AuthorList",  Rep1(Author),  "CompleteYN") group_elem("AuthorList",  Rep1(Author),  "CompleteYN")
simple_elem("Language") simple_elem("Language")
simple_elem("PublicationType") simple_elem("PublicationType")
group_elem("PublicationTypeList",  Rep1(PublicationType)) group_elem("PublicationTypeList",  Rep1(PublicationType))
simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions
simple_elem("Volume")          #  will  be  before  Book. simple_elem("Volume")          #  will  be  before  Book.
simple_elem("VernacularTitle") simple_elem("VernacularTitle")
simple_elem("CollectionTitle") simple_elem("CollectionTitle")
simple_elem("ArticleTitle") simple_elem("ArticleTitle")
simple_elem("Publisher") simple_elem("Publisher")
group_elem("PubDate",  pub_date) group_elem("PubDate",  pub_date)
group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))		 group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))
simple_elem("Country") simple_elem("Country")
simple_elem("MedlineTA") simple_elem("MedlineTA")
simple_elem("MedlineCode") simple_elem("MedlineCode")


Clone # 51
Anti-unification distance between two trees = 0
Total size of two trees = 100
Total length of sequences = 34
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 135		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 140
simple_elem("Affiliation") simple_elem("Affiliation")
group_elem("Author",  author_name  +  Opt(Affiliation)) group_elem("Author",  author_name  +  Opt(Affiliation))
group_elem("AuthorList",  Rep1(Author),  "CompleteYN") group_elem("AuthorList",  Rep1(Author),  "CompleteYN")
simple_elem("Language") simple_elem("Language")
simple_elem("PublicationType") simple_elem("PublicationType")
group_elem("PublicationTypeList",  Rep1(PublicationType)) group_elem("PublicationTypeList",  Rep1(PublicationType))
simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions
simple_elem("Volume")          #  will  be  before  Book. simple_elem("Volume")          #  will  be  before  Book.
simple_elem("VernacularTitle") simple_elem("VernacularTitle")
simple_elem("CollectionTitle") simple_elem("CollectionTitle")
simple_elem("ArticleTitle") simple_elem("ArticleTitle")
simple_elem("Publisher") simple_elem("Publisher")
group_elem("PubDate",  pub_date) group_elem("PubDate",  pub_date)
group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))		 group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))
simple_elem("Country") simple_elem("Country")
simple_elem("MedlineTA") simple_elem("MedlineTA")
simple_elem("MedlineCode") simple_elem("MedlineCode")


Clone # 52
Anti-unification distance between two trees = 0
Total size of two trees = 100
Total length of sequences = 34
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 135		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 151
simple_elem("Affiliation") simple_elem("Affiliation")
group_elem("Author",  author_name  +  Opt(Affiliation)) group_elem("Author",  author_name  +  Opt(Affiliation))
group_elem("AuthorList",  Rep1(Author),  "CompleteYN") group_elem("AuthorList",  Rep1(Author),  "CompleteYN")
simple_elem("Language") simple_elem("Language")
simple_elem("PublicationType") simple_elem("PublicationType")
group_elem("PublicationTypeList",  Rep1(PublicationType)) group_elem("PublicationTypeList",  Rep1(PublicationType))
simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions simple_elem("Title")            #  These  were  moved  up,  so  that  the  definitions
simple_elem("Volume")          #  will  be  before  Book. simple_elem("Volume")          #  will  be  before  Book.
simple_elem("VernacularTitle") simple_elem("VernacularTitle")
simple_elem("CollectionTitle") simple_elem("CollectionTitle")
simple_elem("ArticleTitle") simple_elem("ArticleTitle")
simple_elem("Publisher") simple_elem("Publisher")
group_elem("PubDate",  pub_date) group_elem("PubDate",  pub_date)
group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))		 group_elem("Book",  PubDate  +  Publisher  +  Title  +
Opt(AuthorList)  +  Opt(CollectionTitle)  +  Opt(Volume))
simple_elem("Country") simple_elem("Country")
simple_elem("MedlineTA") simple_elem("MedlineTA")
simple_elem("MedlineCode") simple_elem("MedlineCode")


Clone # 53
Anti-unification distance between two trees = 2
Total size of two trees = 99
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  authors(self,  content):
self._current_ref.authors  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  consrtm(self,  content):
self._current_ref.consrtm  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  title(self,  content):
self._current_ref.title  =  content		 def  title(self,  content):
self._cur_reference.title  =  content
def  journal(self,  content):
self._current_ref.journal  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content
def  medline_id(self,  content):
self._current_ref.medline_id  =  content		 def  medline_id(self,  content):
self._cur_reference.medline_id  =  content
def  pubmed_id(self,  content):
self._current_ref.pubmed_id  =  content		 def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content
def  remark(self,  content):
self._current_ref.comment  =  content		 def  remark(self,  content):
self._cur_reference.remark  =  content


Clone # 54
Anti-unification distance between two trees = 4
Total size of two trees = 97
Total length of sequences = 18
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 325		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 299
inst  =  Motif.Instance() inst  =  Motif.Instance()
inst._seqname  (self._current_seq) inst._seqname  (ls[0])
inst._start  (start) inst._start  (start)
r  =  re.compile('\d+') r  =  re.compile('\d+')
mn  =  r.findall(ds[i])[0] mn  =  r.findall(ds[i])[0]
if  ds[i].find('-')  !=  -1:
inst.strand  =  '-'
inst.strand  =  '+'		 if  ds[i].find('-')  !=  -1:
inst.strand  =  '-'
inst.strand  =  '+'
motif  =  self.data.get_motif_by_name(mn) motif  =  self.data.get_motif_by_name(mn)
motif.add_instance(inst) motif.add_instance(inst)
start  +=  motif.length start  +=  motif.length


Clone # 55
Anti-unification distance between two trees = 4
Total size of two trees = 97
Total length of sequences = 18
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 299		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 274
inst  =  Motif.Instance() inst  =  Motif.Instance()
inst._seqname  (ls[0]) inst._seqname  (self._current_seq)
inst._start  (start) inst._start  (start)
r  =  re.compile('\d+') r  =  re.compile('\d+')
mn  =  r.findall(ds[i])[0] mn  =  r.findall(ds[i])[0]
if  ds[i].find('-')  !=  -1:
inst.strand  =  '-'
inst.strand  =  '+'		 if  ds[i].find('-')  !=  -1:
inst.strand  =  '-'
inst.strand  =  '+'
motif  =  self.data.get_motif_by_name(mn) motif  =  self.data.get_motif_by_name(mn)
motif.add_instance(inst) motif.add_instance(inst)
start  +=  motif.length start  +=  motif.length


Clone # 56
Anti-unification distance between two trees = 4
Total size of two trees = 96
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Scanner.py"
The first line is 850		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Scanner.py"
The first line is 783
assert  line[74:75]  ==  '-',  \
'LOCUS  line  does  not  contain  -  at  position  75  in  date:\n'  +  line		 assert  line[68:69]  ==  '-',  \
'LOCUS  line  does  not  contain  -  at  position  69  in  date:\n'  +  line
name_and_length_str  =  line[GENBANK_INDENT:40] name_and_length_str  =  line[GENBANK_INDENT:29]
while  name_and_length_str.find('    ')<>-1  :
name_and_length_str  =  name_and_length_str.replace('    ','  ')		 while  name_and_length_str.find('    ')<>-1  :
name_and_length_str  =  name_and_length_str.replace('    ','  ')
name_and_length  =  name_and_length_str.split('  ') name_and_length  =  name_and_length_str.split('  ')
assert  len(name_and_length)<=2,  \
'Cannot  parse  the  name  and  length  in  the  LOCUS  line:\n'  +  line		 assert  len(name_and_length)<=2,  \
'Cannot  parse  the  name  and  length  in  the  LOCUS  line:\n'  +  line
assert  len(name_and_length)<>1,  \
'Name  and  length  collide  in  the  LOCUS  line:\n'  +  line		 assert  len(name_and_length)<>1,  \
'Name  and  length  collide  in  the  LOCUS  line:\n'  +  line
consumer.locus(name_and_length[0]) consumer.locus(name_and_length[0])
consumer.size(name_and_length[1]) consumer.size(name_and_length[1])


Clone # 57
Anti-unification distance between two trees = 4
Total size of two trees = 96
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 110		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 101
composite_key  =  'substance'  +  str(  substance  )  +  'path0' composite_key  =  'substance'  +  str(  substance  )  +  'path0'
output  =  output  +  'substance  %s:'  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  '(%s:'  %  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  'substance'  +  str(  substance  )  +  'id0' composite_key  =  'substance'  +  str(  substance  )  +  'id0'
output  =  output  +  '%s  '  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  '%s,'  %  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  'substance'  +  str(  substance  )  +  'name0' composite_key  =  'substance'  +  str(  substance  )  +  'name0'
output  =  output  +  '"%s" &nbsp;'  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  '"%s")\n'  %  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  'substance'  +  str(  substance  )  +  'qty0' composite_key  =  'substance'  +  str(  substance  )  +  'qty0'
output  =  output  +  '%s;\n'  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  '{\n\tQuantity  %s;\n}\n'  %  get_entry(  self.cell_dict,  composite_key  )


Clone # 58
Anti-unification distance between two trees = 4
Total size of two trees = 90
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 277
_settag(feature_location,  NS  +  "feature_location") _settag(feature,  NS  +  "feature")
def  feature_location_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_start",  expr)		 def  feature_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_name",  expr)
_settag(feature_location_start,  NS  +  "feature_location_start") _settag(feature_name,  NS  +  "feature_name")
def  feature_location_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_end",  expr)		 def  feature_location(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location",  expr)
_settag(feature_location_end,  NS  +  "feature_location_end") _settag(feature_location,  NS  +  "feature_location")
def  feature_description(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_description",  expr)		 def  feature_location_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_start",  expr)
_settag(feature_description,  NS  +  "feature_description") _settag(feature_location_start,  NS  +  "feature_location_start")


Clone # 59
Anti-unification distance between two trees = 3
Total size of two trees = 90
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Scanner.py"
The first line is 1416		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Scanner.py"
The first line is 1421
g  =  GenBankScanner() g  =  GenBankScanner()
for  record  in  g.parse_records(StringIO(gbk_example),do_features=False)  :
print  record.id,  record.name,  record.description
print  record.seq		 for  record  in  g.parse_records(StringIO(gbk_example),do_features=True)  :
print  record.id,  record.name,  record.description
print  record.seq
g  =  GenBankScanner() g  =  GenBankScanner()
for  record  in  g.parse_records(StringIO(gbk_example),do_features=True)  :
print  record.id,  record.name,  record.description
print  record.seq		 for  record  in  g.parse_records(StringIO(gbk_example2),do_features=False)  :
print  record.id,  record.name,  record.description
print  record.seq
g  =  GenBankScanner() g  =  GenBankScanner()
for  record  in  g.parse_records(StringIO(gbk_example2),do_features=False)  :
print  record.id,  record.name,  record.description
print  record.seq		 for  record  in  g.parse_records(StringIO(gbk_example2),do_features=True)  :
print  record.id,  record.name,  record.description
print  record.seq


Clone # 60
Anti-unification distance between two trees = 0
Total size of two trees = 88
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SGMLExtractor.py"
The first line is 55		Source file "/home/peter/clone_digger/biopython-1.44/Bio/File.py"
The first line is 108
def  read(self,  *args,  **keywds):
data  =  self._handle.read(  *args,  **keywds)
return  self._stripper.strip(data)		 def  read(self,  *args,  **keywds):
data  =  self._handle.read(*args,  **keywds)
return  self._stripper.strip(data)
def  readline(self,  *args,  **keywds):
line  =  self._handle.readline(  *args,  **keywds)
return  self._stripper.strip(line)		 def  readline(self,  *args,  **keywds):
line  =  self._handle.readline(*args,  **keywds)
return  self._stripper.strip(line)
def  readlines(self,  *args,  **keywds):
lines  =  self._handle.readlines(  *args,  **keywds)
for  i  in  range(len(lines)):
lines[i]  =  self._stripper.strip(str)
return  lines		 def  readlines(self,  *args,  **keywds):
lines  =  self._handle.readlines(*args,  **keywds)
for  i  in  range(len(lines)):
lines[i]  =  self._stripper.strip(str)
return  lines
def  __getattr__(self,  attr):
return  getattr(self._handle,  attr)		 def  __getattr__(self,  attr):
return  getattr(self._handle,  attr)


Clone # 61
Anti-unification distance between two trees = 4
Total size of two trees = 87
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1482		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1426
def  end_alignment(self):
_AlignmentConsumer.end_alignment(self)
if  self._alignment.hsps:
self._round.alignments.append(self._alignment)
if  self._multiple_alignment:
self._round.multiple_alignment  =  self._multiple_alignment		 def  end_alignment(self):
_AlignmentConsumer.end_alignment(self)
if  self._alignment.hsps:
self.data.alignments.append(self._alignment)
if  self._multiple_alignment.alignment:
self.data.multiple_alignment  =  self._multiple_alignment
def  end_hsp(self):
_HSPConsumer.end_hsp(self)
try:
self._alignment.hsps.append(self._hsp)
except  AttributeError:
raise  SyntaxError,  "Found  an  HSP  before  an  alignment"		 def  end_hsp(self):
_HSPConsumer.end_hsp(self)
try:
self._alignment.hsps.append(self._hsp)
except  AttributeError:
raise  SyntaxError,  "Found  an  HSP  before  an  alignment"
def  end_database_report(self):
_DatabaseReportConsumer.end_database_report(self)
self.data.__dict__.update(self._dr.__dict__)		 def  end_database_report(self):
_DatabaseReportConsumer.end_database_report(self)
self.data.__dict__.update(self._dr.__dict__)
def  end_parameters(self):
_ParametersConsumer.end_parameters(self)
self.data.__dict__.update(self._params.__dict__)		 def  end_parameters(self):
_ParametersConsumer.end_parameters(self)
self.data.__dict__.update(self._params.__dict__)


Clone # 62
Anti-unification distance between two trees = 2
Total size of two trees = 86
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Ndb/__init__.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/InterPro/__init__.py"
The first line is 81
def  parse(self,  handle):
self.reset()
self.feed(handle)
return  self.ndb_dict		 def  parse(self,  handle):
self.reset()
self.feed(handle)
return  self.inter_pro_dict
def  feed(self,  handle):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
text  =  ''
while  1:
line  =  uhandle.readline()
if(  not  line  ):
break
line  =  string.strip(  line  )
if(  line[  -7:  ]  ==  ''  ):
break
text  =  text  +  '  '  +  line
sgmllib.SGMLParser.feed(  self,  text  )		 def  feed(self,  handle):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
text  =  ''
while  1:
line  =  uhandle.readline()
if(  not  line  ):
break
line  =  string.strip(  line  )
if(  line[  -7:  ]  ==  ''  ):
break
text  =  text  +  '  '  +  line
sgmllib.SGMLParser.feed(  self,  text  )
def  handle_data(self,  newtext  ):
newtext  =  string.strip(  newtext  )
self.text  =  self.text  +  newtext		 def  handle_data(self,  newtext  ):
newtext  =  string.strip(  newtext  )
self.text  =  self.text  +  newtext


Clone # 63
Anti-unification distance between two trees = 0
Total size of two trees = 86
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/PrintFormat.py"
The first line is 363		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/PrintFormat.py"
The first line is 338
k  =  key%60 k  =  key%60
lineo  =  Join((line[0:(k-1)],str(key),s,'\n')) lineo  =  Join((line[0:(k-1)],  str(key),  s,  '\n'))
line  =  Join((line[0:(k-1)],a,line[k:])) line  =  Join((line[0:(k-1)],  a,  line[k:]))
line2  =  Join((line[0:(k-1)],a,line[k:],'\n')) line2  =  Join((line[0:(k-1)],  a,  line[k:],  '\n'))
linetot  =  Join((lineo,line2)) linetot  =  Join((lineo,line2))
map  =  Join((map,linetot)) map  =  Join((map,linetot))


Clone # 64
Anti-unification distance between two trees = 3
Total size of two trees = 86
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Pathway/Rep/MultiGraph.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Pathway/Rep/Graph.py"
The first line is 117
if  not  self.__adjacency_list.has_key(node):
raise  ValueError,  "Unknown  node:  "  +  str(node)		 if  not  self.__adjacency_list.has_key(node):
raise  ValueError,  "Unknown  node:  "  +  str(node)
del  self.__adjacency_list[node] del  self.__adjacency_list[node]
for  n  in  self.__adjacency_list.keys():
self.__adjacency_list[n]  =  HashSet(filter(lambda  x,node=node:  x[0]  is  not  node,
self.__adjacency_list[n].list()))		 for  n  in  self.__adjacency_list.keys():
self.__adjacency_list[n]  =  HashSet(filter(lambda  x,node=node:  x  is  not  node,
self.__adjacency_list[n].list()))
for  label  in  self.__label_map.keys():
lm  =  HashSet(filter(lambda  x,node=node:  \
(x[0]  is  not  node)  and  (x[1]  is  not  node),
self.__label_map[label].list()))
if  lm.empty():
del  self.__label_map[label]
self.__label_map[label]  =  lm		 for  label  in  self.__label_map.keys():
lm  =  HashSet(filter(lambda  x,node=node:  \
(x[0]  is  not  node)  and  (x[1]  is  not  node),
self.__label_map[label].list()))
if  lm.empty():
del  self.__label_map[label]
self.__label_map[label]  =  lm


Clone # 65
Anti-unification distance between two trees = 3
Total size of two trees = 84
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 381		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 385
def  num_Adeno2(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.num_Adeno2  =  int(  cols[  1  ]  )		 def  num_Lambda(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.num_Lambda  =  int(  cols[  1  ]  )
def  num_Lambda(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.num_Lambda  =  int(  cols[  1  ]  )		 def  num_pBR322(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.num_pBR322  =  int(  cols[  1  ]  )
def  num_pBR322(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.num_pBR322  =  int(  cols[  1  ]  )		 def  num_PhiX174(  self,  line  ):<BR> cols  =  string.split(  line,  ':  '  )
self.data.num_PhiX174  =  int(  cols[  1  ]  )


Clone # 66
Anti-unification distance between two trees = 3
Total size of two trees = 84
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/NeuralNetwork/BackPropagation/Layer.py"
The first line is 161		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NeuralNetwork/BackPropagation/Layer.py"
The first line is 71
self._activation  =  activation self._next_layer  =  next_layer
self.weights  =  {} self.weights  =  {}
for  own_node  in  self.nodes:
for  other_node  in  self._next_layer.nodes:
self.weights[(own_node,  other_node)]  =  \
random.randrange(-2.0,  2.0)		 for  own_node  in  self.nodes:
for  other_node  in  self._next_layer.nodes:
self.weights[(own_node,  other_node)]  =  \
random.randrange(-2.0,  2.0)
self.weight_changes  =  {} self.weight_changes  =  {}
for  own_node  in  self.nodes:
for  other_node  in  self._next_layer.nodes:
self.weight_changes[(own_node,  other_node)]  =  0.0		 for  own_node  in  self.nodes:
for  other_node  in  self._next_layer.nodes:
self.weight_changes[(own_node,  other_node)]  =  0.0
self.values  =  {} self.values  =  {}
for  node  in  self.nodes:
if  node  ==  0:
self.values[node]  =  1
self.values[node]  =  0		 for  node  in  self.nodes:
if  node  ==  0:
self.values[0]  =  1
self.values[node]  =  0


Clone # 67
Anti-unification distance between two trees = 4
Total size of two trees = 83
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/__init__.py"
The first line is 40		Source file "/home/peter/clone_digger/biopython-1.44/Bio/IntelliGenetics/__init__.py"
The first line is 33
def  __init__(self,  handle,  parser  =  None):
self.handle  =  File.UndoHandle(  handle  )
self._reader  =  RecordReader.Everything(  self.handle  )
self._parser  =  parser		 def  __init__(self,  handle,  parser  =  None):
self.handle  =  File.UndoHandle(  handle  )
self._reader  =  IntelliGeneticsReader(  self.handle  )
self._parser  =  parser
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 68
Anti-unification distance between two trees = 4
Total size of two trees = 83
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/__init__.py"
The first line is 60		Source file "/home/peter/clone_digger/biopython-1.44/Bio/IntelliGenetics/__init__.py"
The first line is 33
def  __init__(self,  handle,  parser  =  None):
self.handle  =  File.UndoHandle(  handle  )
self._reader  =  RecordReader.Everything(  self.handle  )
self._parser  =  parser		 def  __init__(self,  handle,  parser  =  None):
self.handle  =  File.UndoHandle(  handle  )
self._reader  =  IntelliGeneticsReader(  self.handle  )
self._parser  =  parser
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 69
Anti-unification distance between two trees = 4
Total size of two trees = 82
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 199		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 186
composite_key  =  prefix  +  'o_path'  +  str(  option  ) composite_key  =  prefix  +  'e_path'  +  str(  effector  )
output  =  output  +  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'o_id'  +  str(  option  ) composite_key  =  prefix  +  'e_id'  +  str(  effector  )
output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'o_coeff'  +  str(  option  ) composite_key  =  prefix  +  'e_coeff'  +  str(  effector  )
output  =  output  +  '%s;\n'  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  '%s;\n'  %  get_entry(  self.cell_dict,  composite_key  )
output  =  output  +  ';\n' output  =  output  +  ';\n'


Clone # 70
Anti-unification distance between two trees = 4
Total size of two trees = 82
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 164		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 152
composite_key  =  prefix  +  'p_path'  +  str(  product  ) composite_key  =  prefix  +  's_path'  +  str(  substrate  )
output  =  output  +  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'p_id'  +  str(  product  ) composite_key  =  prefix  +  's_id'  +  str(  substrate  )
output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'p_coeff'  +  str(  product  ) composite_key  =  prefix  +  's_coeff'  +  str(  substrate  )
output  =  output  +  '%s'  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  '%s'  %  get_entry(  self.cell_dict,  composite_key  )
output  =  output  +  ';\n' output  =  output  +  ';\n'


Clone # 71
Anti-unification distance between two trees = 2
Total size of two trees = 82
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 101		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 101
author_name  =  Alt(personal_name,  CollectiveName) author_name  =  Alt(personal_name,  CollectiveName)
elements  =  [
"Year",  "Month",  "Day",
"Season",  "MedlineDate",
"Hour",  "Minute",  "Second"		 elements  =  [
"Year",  "Month",  "Day",
"Season",  "MedlineDate",
"Hour",  "Minute",  "Second"
[simple_elem(e)  for  e  in  elements] [simple_elem(e)  for  e  in  elements]
normal_date  =  Year  +  Month  +  Day  +  \
Opt(Hour  +  Opt(Minute  +  Opt(Second)))		 normal_date  =  Year  +  Month  +  Day  +  \
Opt(Hour  +  Opt(Minute  +  Opt(Second)))
pub_date  =  Alt((Year  +  Opt(Alt((Month  +  Opt(Day)),  Season))),  MedlineDate) pub_date  =  Alt((Year  +  Opt(Alt((Month  +  Opt(Day)),  Season))),  MedlineDate)
simple_elem("CopyrightInformation") simple_elem("NlmUniqueID")
simple_elem("AbstractText") simple_elem("PMID")


Clone # 72
Anti-unification distance between two trees = 0
Total size of two trees = 82
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/medline.py"
The first line is 3		Source file "/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/fasta.py"
The first line is 3
from  Bio.config.DBRegistry  import  DBGroup,  EUtilsDB from  Bio.config.DBRegistry  import  DBGroup,  EUtilsDB
from  _support  import  * from  _support  import  *
from  Martel  import  * from  Martel  import  *
proxy_error_expr  =  has_expr(Alt(Str("500"),  Str("502"))  +  Str("  Proxy  Error")) proxy_error_expr  =  has_expr(Alt(Str("500"),  Str("502"))  +  Str("  Proxy  Error"))
diagnostic_error_expr  =  has_str("WWW  Error  500  Diagnostic") diagnostic_error_expr  =  has_str("WWW  Error  500  Diagnostic")
error_expr  =  Str("ERROR") error_expr  =  Str("ERROR")
ncbi_failures=[
(proxy_error_expr,  "proxy  error"),
(diagnostic_error_expr,  "diagnostic  error"),
(error_expr,  "ERROR"),
(html_expr,  "I  got  HTML  and  shouldn't  have"),
(Str("Please  try  again  later"),  "Please  try  again  later"),
(Str("The  sequence  has  been  intentionally  withdrawn"),
"Sequence  withdrawn"),
(blank_expr,  "No  data  returned")		 ncbi_failures=[
(proxy_error_expr,  "proxy  error"),
(diagnostic_error_expr,  "diagnostic  error"),
(error_expr,  "ERROR"),
(html_expr,  "I  got  HTML  and  shouldn't  have"),
(Str("Please  try  again  later"),  "Please  try  again  later"),
(Str("The  sequence  has  been  intentionally  withdrawn"),
"Sequence  withdrawn"),
(blank_expr,  "No  data  returned")


Clone # 73
Anti-unification distance between two trees = 0
Total size of two trees = 82
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/genbank.py"
The first line is 6		Source file "/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/medline.py"
The first line is 3
from  Bio.config.DBRegistry  import  DBGroup,  EUtilsDB from  Bio.config.DBRegistry  import  DBGroup,  EUtilsDB
from  _support  import  * from  _support  import  *
from  Martel  import  * from  Martel  import  *
proxy_error_expr  =  has_expr(Alt(Str("500"),  Str("502"))  +  Str("  Proxy  Error")) proxy_error_expr  =  has_expr(Alt(Str("500"),  Str("502"))  +  Str("  Proxy  Error"))
diagnostic_error_expr  =  has_str("WWW  Error  500  Diagnostic") diagnostic_error_expr  =  has_str("WWW  Error  500  Diagnostic")
error_expr  =  Str("ERROR") error_expr  =  Str("ERROR")
ncbi_failures=[
(proxy_error_expr,  "proxy  error"),
(diagnostic_error_expr,  "diagnostic  error"),
(error_expr,  "ERROR"),
(html_expr,  "I  got  HTML  and  shouldn't  have"),
(Str("Please  try  again  later"),  "Please  try  again  later"),
(Str("The  sequence  has  been  intentionally  withdrawn"),
"Sequence  withdrawn"),
(blank_expr,  "No  data  returned")		 ncbi_failures=[
(proxy_error_expr,  "proxy  error"),
(diagnostic_error_expr,  "diagnostic  error"),
(error_expr,  "ERROR"),
(html_expr,  "I  got  HTML  and  shouldn't  have"),
(Str("Please  try  again  later"),  "Please  try  again  later"),
(Str("The  sequence  has  been  intentionally  withdrawn"),
"Sequence  withdrawn"),
(blank_expr,  "No  data  returned")


Clone # 74
Anti-unification distance between two trees = 0
Total size of two trees = 82
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/genbank.py"
The first line is 6		Source file "/home/peter/clone_digger/biopython-1.44/Bio/dbdefs/fasta.py"
The first line is 3
from  Bio.config.DBRegistry  import  DBGroup,  EUtilsDB from  Bio.config.DBRegistry  import  DBGroup,  EUtilsDB
from  _support  import  * from  _support  import  *
from  Martel  import  * from  Martel  import  *
proxy_error_expr  =  has_expr(Alt(Str("500"),  Str("502"))  +  Str("  Proxy  Error")) proxy_error_expr  =  has_expr(Alt(Str("500"),  Str("502"))  +  Str("  Proxy  Error"))
diagnostic_error_expr  =  has_str("WWW  Error  500  Diagnostic") diagnostic_error_expr  =  has_str("WWW  Error  500  Diagnostic")
error_expr  =  Str("ERROR") error_expr  =  Str("ERROR")
ncbi_failures=[
(proxy_error_expr,  "proxy  error"),
(diagnostic_error_expr,  "diagnostic  error"),
(error_expr,  "ERROR"),
(html_expr,  "I  got  HTML  and  shouldn't  have"),
(Str("Please  try  again  later"),  "Please  try  again  later"),
(Str("The  sequence  has  been  intentionally  withdrawn"),
"Sequence  withdrawn"),
(blank_expr,  "No  data  returned")		 ncbi_failures=[
(proxy_error_expr,  "proxy  error"),
(diagnostic_error_expr,  "diagnostic  error"),
(error_expr,  "ERROR"),
(html_expr,  "I  got  HTML  and  shouldn't  have"),
(Str("Please  try  again  later"),  "Please  try  again  later"),
(Str("The  sequence  has  been  intentionally  withdrawn"),
"Sequence  withdrawn"),
(blank_expr,  "No  data  returned")


Clone # 75
Anti-unification distance between two trees = 4
Total size of two trees = 82
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 4		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 4
import  Bio.EUtils.POM import  Bio.EUtils.POM
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 76
Anti-unification distance between two trees = 3
Total size of two trees = 82
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 4		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 4
import  Bio.EUtils.POM import  Bio.EUtils.POM
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 77
Anti-unification distance between two trees = 4
Total size of two trees = 82
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 4		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 4
import  Bio.EUtils.POM import  Bio.EUtils.POM
class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 78
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 79
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 80
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 81
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 82
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 83
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 84
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 85
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 86
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 87
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 88
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 89
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 90
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 91
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 92
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 93
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 94
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 95
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 96
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 97
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 98
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 99
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 100
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 101
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 102
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 103
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 104
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 105
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 106
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 107
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 108
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 109
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 110
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 111
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 112
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 113
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 114
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 115
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 116
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 117
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 118
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 119
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 120
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 121
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 122
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 123
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 124
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 125
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 126
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 127
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 128
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 129
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 130
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 131
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 132
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 133
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 134
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 135
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 136
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 137
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 138
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 139
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 140
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 141
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 142
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 143
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 144
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97
class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 145
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46
class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 146
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 147
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 148
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 149
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 150
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 151
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 152
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 153
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 154
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 155
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 156
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 157
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 158
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 159
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 160
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 161
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 162
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 163
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 164
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 165
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 166
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 167
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 168
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 169
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 170
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 171
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 172
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 173
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 174
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 175
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 176
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 177
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 178
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 179
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 180
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 181
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 182
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 183
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 184
Anti-unification distance between two trees = 3
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 185
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 186
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 187
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 188
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 189
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 190
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 191
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 192
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 193
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 194
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 195
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 196
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 197
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 198
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 199
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 200
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 201
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 202
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 203
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 204
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 205
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 206
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 207
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 208
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 209
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 210
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 211
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 212
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 213
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 214
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 215
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 216
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 217
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 218
Anti-unification distance between two trees = 3
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 219
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 220
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 221
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 222
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 223
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 224
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 225
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 226
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 227
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 228
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 229
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 230
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 231
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 232
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 233
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 234
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 235
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 236
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 237
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 238
Anti-unification distance between two trees = 2
Total size of two trees = 80
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqIO/FASTA.py"
The first line is 78		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqIO/generic.py"
The first line is 184
id  =  record.id id  =  record.id
assert  os.linesep  not  in  id assert  os.linesep  not  in  id
description  =  record.description description  =  record.description
assert  os.linesep  not  in  description assert  os.linesep  not  in  description
self.outfile.write(">%s  %s%s"  %  (id,  description,os.linesep)) self.outstream.write(">P1;%s  %s%s"  %  (id,  description,os.linesep))
data  =  record.seq.tostring() data  =  record.seq.tostring()
for  i  in  range(0,  len(data),  60):
self.outfile.write(data[i:i+60]  +  os.linesep)		 for  i  in  range(0,  len(data),  60):
self.outstream.write(data[i:i+60]  +  os.linesep)


Clone # 239
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/NMR/xpktools.py"
The first line is 55		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NMR/xpktools.py"
The first line is 54
self.axislabels=string.split(infile.readline(),"\012")[0] self.firstline=string.split(infile.readline(),"\012")[0]
self.dataset=string.split(infile.readline(),"\012")[0] self.axislabels=string.split(infile.readline(),"\012")[0]
self.sw=string.split(infile.readline(),"\012")[0] self.dataset=string.split(infile.readline(),"\012")[0]
self.sf=string.split(infile.readline(),"\012")[0] self.sw=string.split(infile.readline(),"\012")[0]


Clone # 240
Anti-unification distance between two trees = 2
Total size of two trees = 80
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 753		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 380
def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.name
if  not  key:
raise  KeyError,  "empty  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length		 def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.accession
if  not  key:
raise  KeyError,  "empty  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length


Clone # 241
Anti-unification distance between two trees = 3
Total size of two trees = 80
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 753		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 1112
def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.name
if  not  key:
raise  KeyError,  "empty  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length		 def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.entry_name
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length


Clone # 242
Anti-unification distance between two trees = 3
Total size of two trees = 80
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 380		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 1112
def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.accession
if  not  key:
raise  KeyError,  "empty  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length		 def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.entry_name
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length


Clone # 243
Anti-unification distance between two trees = 1
Total size of two trees = 80
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 402		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 437
def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.title
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length		 def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.title
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length


Clone # 244
Anti-unification distance between two trees = 2
Total size of two trees = 80
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 402		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 1112
def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.title
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length		 def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.entry_name
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length


Clone # 245
Anti-unification distance between two trees = 3
Total size of two trees = 80
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 402		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 753
def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.title
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length		 def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.name
if  not  key:
raise  KeyError,  "empty  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length


Clone # 246
Anti-unification distance between two trees = 3
Total size of two trees = 80
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 402		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 380
def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.title
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length		 def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.accession
if  not  key:
raise  KeyError,  "empty  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length


Clone # 247
Anti-unification distance between two trees = 2
Total size of two trees = 80
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 437		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 1112
def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.title
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length		 def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.entry_name
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length


Clone # 248
Anti-unification distance between two trees = 3
Total size of two trees = 80
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 437		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 753
def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.title
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length		 def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.name
if  not  key:
raise  KeyError,  "empty  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length


Clone # 249
Anti-unification distance between two trees = 3
Total size of two trees = 80
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 437		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 380
def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.title
if  not  key:
raise  KeyError,  "empty  sequence  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length		 def  index_file(filename,  indexname,  rec2key=None):
if  not  os.path.exists(filename):
raise  ValueError,  "%s  does  not  exist"  %  filename
index  =  Index.Index(indexname,  truncate=1)
index[Dictionary._Dictionary__filename_key]  =  filename
iter  =  Iterator(open(filename),  parser=RecordParser())
while  1:
start  =  iter._uhandle.tell()
rec  =  iter.next()
length  =  iter._uhandle.tell()  -  start
if  rec  is  None:
break
if  rec2key  is  not  None:
key  =  rec2key(rec)
key  =  rec.accession
if  not  key:
raise  KeyError,  "empty  key  was  produced"
elif  index.has_key(key):
raise  KeyError,  "duplicate  key  %s  found"  %  key
index[key]  =  start,  length


Clone # 250
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 89		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 86
unambiguous_dna_by_id  =  {} unambiguous_dna_by_name  =  {}
for  key,  value  in  CodonTable.unambiguous_dna_by_id.items():
unambiguous_dna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_dna_by_name.items():
unambiguous_dna_by_name[key]  =  Translator(value)
unambiguous_rna_by_name  =  {} unambiguous_dna_by_id  =  {}
for  key,  value  in  CodonTable.unambiguous_rna_by_name.items():
unambiguous_rna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_dna_by_id.items():
unambiguous_dna_by_id[key]  =  Translator(value)
unambiguous_rna_by_id  =  {} unambiguous_rna_by_name  =  {}
for  key,  value  in  CodonTable.unambiguous_rna_by_id.items():
unambiguous_rna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_rna_by_name.items():
unambiguous_rna_by_name[key]  =  Translator(value)
ambiguous_dna_by_name  =  {} unambiguous_rna_by_id  =  {}
for  key,  value  in  CodonTable.ambiguous_dna_by_name.items():
ambiguous_dna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_rna_by_id.items():
unambiguous_rna_by_id[key]  =  Translator(value)


Clone # 251
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 93		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 86
unambiguous_rna_by_name  =  {} unambiguous_dna_by_name  =  {}
for  key,  value  in  CodonTable.unambiguous_rna_by_name.items():
unambiguous_rna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_dna_by_name.items():
unambiguous_dna_by_name[key]  =  Translator(value)
unambiguous_rna_by_id  =  {} unambiguous_dna_by_id  =  {}
for  key,  value  in  CodonTable.unambiguous_rna_by_id.items():
unambiguous_rna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_dna_by_id.items():
unambiguous_dna_by_id[key]  =  Translator(value)
ambiguous_dna_by_name  =  {} unambiguous_rna_by_name  =  {}
for  key,  value  in  CodonTable.ambiguous_dna_by_name.items():
ambiguous_dna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_rna_by_name.items():
unambiguous_rna_by_name[key]  =  Translator(value)
ambiguous_dna_by_id  =  {} unambiguous_rna_by_id  =  {}
for  key,  value  in  CodonTable.ambiguous_dna_by_id.items():
ambiguous_dna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_rna_by_id.items():
unambiguous_rna_by_id[key]  =  Translator(value)


Clone # 252
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 96		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 86
unambiguous_rna_by_id  =  {} unambiguous_dna_by_name  =  {}
for  key,  value  in  CodonTable.unambiguous_rna_by_id.items():
unambiguous_rna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_dna_by_name.items():
unambiguous_dna_by_name[key]  =  Translator(value)
ambiguous_dna_by_name  =  {} unambiguous_dna_by_id  =  {}
for  key,  value  in  CodonTable.ambiguous_dna_by_name.items():
ambiguous_dna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_dna_by_id.items():
unambiguous_dna_by_id[key]  =  Translator(value)
ambiguous_dna_by_id  =  {} unambiguous_rna_by_name  =  {}
for  key,  value  in  CodonTable.ambiguous_dna_by_id.items():
ambiguous_dna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_rna_by_name.items():
unambiguous_rna_by_name[key]  =  Translator(value)
ambiguous_rna_by_name  =  {} unambiguous_rna_by_id  =  {}
for  key,  value  in  CodonTable.ambiguous_rna_by_name.items():
ambiguous_rna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_rna_by_id.items():
unambiguous_rna_by_id[key]  =  Translator(value)


Clone # 253
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 101		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 86
ambiguous_dna_by_name  =  {} unambiguous_dna_by_name  =  {}
for  key,  value  in  CodonTable.ambiguous_dna_by_name.items():
ambiguous_dna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_dna_by_name.items():
unambiguous_dna_by_name[key]  =  Translator(value)
ambiguous_dna_by_id  =  {} unambiguous_dna_by_id  =  {}
for  key,  value  in  CodonTable.ambiguous_dna_by_id.items():
ambiguous_dna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_dna_by_id.items():
unambiguous_dna_by_id[key]  =  Translator(value)
ambiguous_rna_by_name  =  {} unambiguous_rna_by_name  =  {}
for  key,  value  in  CodonTable.ambiguous_rna_by_name.items():
ambiguous_rna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_rna_by_name.items():
unambiguous_rna_by_name[key]  =  Translator(value)
ambiguous_rna_by_id  =  {} unambiguous_rna_by_id  =  {}
for  key,  value  in  CodonTable.ambiguous_rna_by_id.items():
ambiguous_rna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_rna_by_id.items():
unambiguous_rna_by_id[key]  =  Translator(value)


Clone # 254
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 255
Anti-unification distance between two trees = 4
Total size of two trees = 80
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 256
Anti-unification distance between two trees = 2
Total size of two trees = 76
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 362		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 379
class  toupper(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))		 class  normalize(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))
class  tolower(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))		 class  Rule(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))


Clone # 257
Anti-unification distance between two trees = 4
Total size of two trees = 76
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 268
def  end_kernel(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.kernel.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.kernel.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.kernel.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.kernel.reactions.append(  reaction  )		 def  end_convex_basis(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.convex_basis.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.convex_basis.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.convex_basis.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.convex_basis.reactions.append(  reaction  )
def  end_subsets(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.subsets.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.subsets.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.subsets.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.subsets.reactions.append(  reaction  )		 def  end_conservation_relations(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.conservation_relations.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.conservation_relations.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.conservation_relations.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.conservation_relations.reactions.append(  reaction  )


Clone # 258
Anti-unification distance between two trees = 4
Total size of two trees = 76
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 277		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 268
def  end_conservation_relations(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.conservation_relations.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.conservation_relations.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.conservation_relations.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.conservation_relations.reactions.append(  reaction  )		 def  end_convex_basis(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.convex_basis.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.convex_basis.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.convex_basis.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.convex_basis.reactions.append(  reaction  )
def  end_elementary_modes(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.elementary_modes.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.elementary_modes.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.elementary_modes.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.elementary_modes.reactions.append(  reaction  )		 def  end_conservation_relations(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.conservation_relations.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.conservation_relations.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.conservation_relations.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.conservation_relations.reactions.append(  reaction  )


Clone # 259
Anti-unification distance between two trees = 4
Total size of two trees = 76
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 277		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 237
def  end_conservation_relations(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.conservation_relations.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.conservation_relations.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.conservation_relations.enzymes.append(  enzyme  )<BR> for  reaction  in  self._reactions:
self.data.conservation_relations.reactions.append(  reaction  )</span>		 def  end_kernel(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.kernel.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.kernel.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.kernel.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.kernel.reactions.append(  reaction  )</span>
def  end_elementary_modes(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.elementary_modes.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.elementary_modes.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.elementary_modes.enzymes.append(  enzyme  )<BR> for  reaction  in  self._reactions:
self.data.elementary_modes.reactions.append(  reaction  )</span>		 def  end_subsets(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.subsets.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.subsets.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.subsets.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.subsets.reactions.append(  reaction  )</span>


Clone # 260
Anti-unification distance between two trees = 4
Total size of two trees = 76
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 57		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 406
def  _scan_line(self,  line_type,  uhandle,  event_fn,
exactly_one=None,  one_or_more=None,  any_number=None,
up_to_one=None):
if  exactly_one  or  one_or_more:
read_and_call(uhandle,  event_fn,  start=line_type)
if  one_or_more  or  any_number:
while  1:
if  not  attempt_read_and_call(uhandle,  event_fn,
start=line_type):
break
if  up_to_one:
attempt_read_and_call(uhandle,  event_fn,  start=line_type)		 def  _scan_line(self,  line_type,  uhandle,  event_fn,
exactly_one=None,  one_or_more=None,  any_number=None,
up_to_one=None):
if  exactly_one  or  one_or_more:
read_and_call(uhandle,  event_fn,  start=line_type)
if  one_or_more  or  any_number:
while  1:
if  not  attempt_read_and_call(uhandle,  event_fn,
start=line_type):
break
if  up_to_one:
attempt_read_and_call(uhandle,  event_fn,  start=line_type)
def  _scan_id(self,  uhandle,  consumer):
self._scan_line('ID',  uhandle,  consumer.identification,  exactly_one=1)		 def  _scan_id(self,  uhandle,  consumer):
self._scan_line('ID',  uhandle,  consumer.identification,  exactly_one=1)
def  _scan_de(self,  uhandle,  consumer):
self._scan_line('DE',  uhandle,  consumer.description,  one_or_more=1)		 def  _scan_ac(self,  uhandle,  consumer):
self._scan_line('AC',  uhandle,  consumer.accession,  exactly_one=1)


Clone # 261
Anti-unification distance between two trees = 4
Total size of two trees = 76
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 57
def  _scan_line(self,  line_type,  uhandle,  event_fn,
exactly_one=None,  one_or_more=None,  any_number=None,
up_to_one=None):
if  exactly_one  or  one_or_more:
read_and_call(uhandle,  event_fn,  start=line_type)
if  one_or_more  or  any_number:
while  1:
if  not  attempt_read_and_call(uhandle,  event_fn,
start=line_type):
break
if  up_to_one:
attempt_read_and_call(uhandle,  event_fn,  start=line_type)		 def  _scan_line(self,  line_type,  uhandle,  event_fn,
exactly_one=None,  one_or_more=None,  any_number=None,
up_to_one=None):
if  exactly_one  or  one_or_more:
read_and_call(uhandle,  event_fn,  start=line_type)
if  one_or_more  or  any_number:
while  1:
if  not  attempt_read_and_call(uhandle,  event_fn,
start=line_type):
break
if  up_to_one:
attempt_read_and_call(uhandle,  event_fn,  start=line_type)
def  _scan_id(self,  uhandle,  consumer):
self._scan_line('ID',  uhandle,  consumer.identification,  exactly_one=1)		 def  _scan_id(self,  uhandle,  consumer):
self._scan_line('ID',  uhandle,  consumer.identification,  exactly_one=1)
def  _scan_ac(self,  uhandle,  consumer):
self._scan_line('AC',  uhandle,  consumer.accession,  any_number=1)		 def  _scan_de(self,  uhandle,  consumer):
self._scan_line('DE',  uhandle,  consumer.description,  one_or_more=1)


Clone # 262
Anti-unification distance between two trees = 1
Total size of two trees = 76
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 406
def  _scan_line(self,  line_type,  uhandle,  event_fn,
exactly_one=None,  one_or_more=None,  any_number=None,
up_to_one=None):
if  exactly_one  or  one_or_more:
read_and_call(uhandle,  event_fn,  start=line_type)
if  one_or_more  or  any_number:
while  1:
if  not  attempt_read_and_call(uhandle,  event_fn,
start=line_type):
break
if  up_to_one:
attempt_read_and_call(uhandle,  event_fn,  start=line_type)		 def  _scan_line(self,  line_type,  uhandle,  event_fn,
exactly_one=None,  one_or_more=None,  any_number=None,
up_to_one=None):
if  exactly_one  or  one_or_more:
read_and_call(uhandle,  event_fn,  start=line_type)
if  one_or_more  or  any_number:
while  1:
if  not  attempt_read_and_call(uhandle,  event_fn,
start=line_type):
break
if  up_to_one:
attempt_read_and_call(uhandle,  event_fn,  start=line_type)
def  _scan_id(self,  uhandle,  consumer):
self._scan_line('ID',  uhandle,  consumer.identification,  exactly_one=1)		 def  _scan_id(self,  uhandle,  consumer):
self._scan_line('ID',  uhandle,  consumer.identification,  exactly_one=1)
def  _scan_ac(self,  uhandle,  consumer):
self._scan_line('AC',  uhandle,  consumer.accession,  any_number=1)		 def  _scan_ac(self,  uhandle,  consumer):
self._scan_line('AC',  uhandle,  consumer.accession,  exactly_one=1)


Clone # 263
Anti-unification distance between two trees = 2
Total size of two trees = 74
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 120		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 110
property  =  "translator.id.%d"  %  id property  =  "translator.id.%d"  %  id
set_prop[obj.table.nucleotide_alphabet.__class__][property]  =  obj set_prop[obj.table.nucleotide_alphabet.__class__][property]  =  obj
property  =  "ambiguous_rna_translator.id.%d"  %  id property  =  "ambiguous_translator.id.%d"  %  id
set_prop[obj.table.protein_alphabet.__class__][property]  =  obj set_prop[obj.table.protein_alphabet.__class__][property]  =  obj
if  id  ==  1:
set_prop[obj.table.nucleotide_alphabet.__class__]["translator"]  =  obj
set_prop[obj.table.protein_alphabet.__class__]["ambiguous_rna_translator"]  =  obj		 if  id  ==  1:
set_prop[obj.table.nucleotide_alphabet.__class__]["translator"]  =  obj
set_prop[obj.table.protein_alphabet.__class__]["ambiguous_translator"]  =  obj


Clone # 264
Anti-unification distance between two trees = 2
Total size of two trees = 74
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 120		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 87
property  =  "translator.id.%d"  %  id property  =  "translator.id.%d"  %  id
set_prop[obj.table.nucleotide_alphabet.__class__][property]  =  obj set_prop[obj.table.nucleotide_alphabet.__class__][property]  =  obj
property  =  "ambiguous_rna_translator.id.%d"  %  id property  =  "rna_translator.id.%d"  %  id
set_prop[obj.table.protein_alphabet.__class__][property]  =  obj set_prop[obj.table.protein_alphabet.__class__][property]  =  obj
if  id  ==  1:
set_prop[obj.table.nucleotide_alphabet.__class__]["translator"]  =  obj
set_prop[obj.table.protein_alphabet.__class__]["ambiguous_rna_translator"]  =  obj		 if  id  ==  1:
set_prop[obj.table.nucleotide_alphabet.__class__]["translator"]  =  obj
set_prop[obj.table.protein_alphabet.__class__]["rna_translator"]  =  obj


Clone # 265
Anti-unification distance between two trees = 2
Total size of two trees = 74
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 110		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 87
property  =  "translator.id.%d"  %  id property  =  "translator.id.%d"  %  id
set_prop[obj.table.nucleotide_alphabet.__class__][property]  =  obj set_prop[obj.table.nucleotide_alphabet.__class__][property]  =  obj
property  =  "ambiguous_translator.id.%d"  %  id property  =  "rna_translator.id.%d"  %  id
set_prop[obj.table.protein_alphabet.__class__][property]  =  obj set_prop[obj.table.protein_alphabet.__class__][property]  =  obj
if  id  ==  1:
set_prop[obj.table.nucleotide_alphabet.__class__]["translator"]  =  obj
set_prop[obj.table.protein_alphabet.__class__]["ambiguous_translator"]  =  obj		 if  id  ==  1:
set_prop[obj.table.nucleotide_alphabet.__class__]["translator"]  =  obj
set_prop[obj.table.protein_alphabet.__class__]["rna_translator"]  =  obj


Clone # 266
Anti-unification distance between two trees = 0
Total size of two trees = 74
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 121
items  =  metabolite.split() items  =  metabolite.split()
name  =  items[  0  ] name  =  items[  0  ]
consumed  =  int(  items[  1  ]  ) consumed  =  int(  items[  1  ]  )
built  =  int(  items[  2  ]  ) built  =  int(  items[  2  ]  )
vector  =  items[  4  ].replace(  'r',  '0'  ) vector  =  items[  4  ].replace(  'r',  '0'  )
vector  =  vector.replace(  'i',  '1'  ) vector  =  vector.replace(  'i',  '1'  )
vector  =  list(  vector  ) vector  =  list(  vector  )


Clone # 267
Anti-unification distance between two trees = 1
Total size of two trees = 74
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 320		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 370
DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol() DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol()
citation_format  =  MedlineCitation citation_format  =  MedlineCitation
header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start) header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start)
footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end
format  =  HeaderFooter(
None,  {},
header_format,  RecordReader.CountLines,  (4,),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),		 format  =  HeaderFooter(
"MedlineFile",  {},
header_format,  RecordReader.CountLines,  (4,),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),


Clone # 268
Anti-unification distance between two trees = 1
Total size of two trees = 74
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 327		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 370
DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol() DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol()
citation_format  =  MedlineCitation citation_format  =  MedlineCitation
header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start) header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start)
footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end
format  =  HeaderFooter(
None,  {},
header_format,  RecordReader.CountLines,  (4,),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),		 format  =  HeaderFooter(
"MedlineFile",  {},
header_format,  RecordReader.CountLines,  (4,),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),


Clone # 269
Anti-unification distance between two trees = 3
Total size of two trees = 74
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_001211_format.py"
The first line is 314		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 370
DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol() DOCTYPE  =  Str("]+")  +  Str(">")  +  AnyEol()
citation_format  =  MedlineCitation citation_format  =  MedlineCitation
header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start) header_format  =  Group("header",  DOCTYPE  +  MedlineCitationSet_start)
footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end footer_format  =  Opt(DeleteCitation)  +  MedlineCitationSet_end
format  =  HeaderFooter(
None,  {},
header_format,  RecordReader.Until,  ("",),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),		 format  =  HeaderFooter(
"MedlineFile",  {},
header_format,  RecordReader.CountLines,  (4,),
citation_format,  RecordReader.EndsWith,  ("",),
footer_format,  RecordReader.Everything,  (),


Clone # 270
Anti-unification distance between two trees = 2
Total size of two trees = 74
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 233		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 125
class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)		 class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)


Clone # 271
Anti-unification distance between two trees = 2
Total size of two trees = 74
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 233		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 180
class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)		 class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)


Clone # 272
Anti-unification distance between two trees = 2
Total size of two trees = 74
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 233		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 120
class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)		 class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)


Clone # 273
Anti-unification distance between two trees = 2
Total size of two trees = 74
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 125		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 120
class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)		 class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)


Clone # 274
Anti-unification distance between two trees = 2
Total size of two trees = 74
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 180		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 120
class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)		 class  Dictionary:
__filename_key  =  '__filename'
def  __init__(self,  indexname,  parser=None):
self._index  =  Index.Index(indexname)
self._handle  =  open(self._index[Dictionary.__filename_key])
self._parser  =  parser
def  __len__(self):
return  len(self._index)
def  __getitem__(self,  key):
start,  len  =  self._index[key]
self._handle.seek(start)
data  =  self._handle.read(len)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data
def  __getattr__(self,  name):
return  getattr(self._index,  name)


Clone # 275
Anti-unification distance between two trees = 1
Total size of two trees = 74
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SubsMat/MatrixInfo.py"
The first line is 622		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SubsMat/MatrixInfo.py"
The first line is 550
blosum55  =  {
('W',  'F')  :  1,  ('L',  'R')  :  -3,  ('S',  'P')  :  -1,  ('V',  'T')  :  0,
('Q',  'Q')  :  7,  ('N',  'A')  :  -1,  ('Z',  'Y')  :  -2,  ('W',  'R')  :  -3,
('Q',  'A')  :  -1,  ('S',  'D')  :  0,  ('H',  'H')  :  10,  ('S',  'H')  :  -1,
('H',  'D')  :  -1,  ('L',  'N')  :  -4,  ('W',  'A')  :  -3,  ('Y',  'M')  :  0,
('G',  'R')  :  -3,  ('Y',  'I')  :  -1,  ('Y',  'E')  :  -2,  ('B',  'Y')  :  -3,
('Y',  'A')  :  -2,  ('V',  'D')  :  -4,  ('B',  'S')  :  0,  ('Y',  'Y')  :  8,
('G',  'N')  :  0,  ('E',  'C')  :  -3,  ('Y',  'Q')  :  -1,  ('Z',  'Z')  :  5,
('V',  'A')  :  0,  ('C',  'C')  :  13,  ('M',  'R')  :  -2,  ('V',  'E')  :  -3,
('T',  'N')  :  0,  ('P',  'P')  :  10,  ('V',  'I')  :  4,  ('V',  'S')  :  -2,
('Z',  'P')  :  -1,  ('V',  'M')  :  1,  ('T',  'F')  :  -2,  ('V',  'Q')  :  -3,
('K',  'K')  :  6,  ('P',  'D')  :  -1,  ('I',  'H')  :  -4,  ('I',  'D')  :  -4,
('T',  'R')  :  -1,  ('P',  'L')  :  -4,  ('K',  'G')  :  -2,  ('M',  'N')  :  -2,
('P',  'H')  :  -2,  ('F',  'Q')  :  -4,  ('Z',  'G')  :  -2,  ('X',  'L')  :  -1,
('T',  'M')  :  -1,  ('Z',  'C')  :  -3,  ('X',  'H')  :  -1,  ('D',  'R')  :  -2,
('B',  'W')  :  -5,  ('X',  'D')  :  -1,  ('Z',  'K')  :  1,  ('F',  'A')  :  -3,
('Z',  'W')  :  -2,  ('F',  'E')  :  -3,  ('D',  'N')  :  2,  ('B',  'K')  :  0,
('X',  'X')  :  -1,  ('F',  'I')  :  0,  ('B',  'G')  :  -1,  ('X',  'T')  :  0,
('F',  'M')  :  0,  ('B',  'C')  :  -3,  ('Z',  'I')  :  -3,  ('Z',  'V')  :  -3,
('S',  'S')  :  5,  ('L',  'Q')  :  -2,  ('W',  'E')  :  -3,  ('Q',  'R')  :  1,
('N',  'N')  :  7,  ('W',  'M')  :  -1,  ('Q',  'C')  :  -3,  ('W',  'I')  :  -3,
('S',  'C')  :  -1,  ('L',  'A')  :  -2,  ('S',  'G')  :  0,  ('L',  'E')  :  -3,
('W',  'Q')  :  -1,  ('H',  'G')  :  -2,  ('S',  'K')  :  0,  ('Q',  'N')  :  0,
('N',  'R')  :  -1,  ('H',  'C')  :  -3,  ('Y',  'N')  :  -2,  ('G',  'Q')  :  -2,
('Y',  'F')  :  4,  ('C',  'A')  :  -1,  ('V',  'L')  :  1,  ('G',  'E')  :  -3,
('G',  'A')  :  0,  ('K',  'R')  :  3,  ('E',  'D')  :  2,  ('Y',  'R')  :  -1,
('M',  'Q')  :  0,  ('T',  'I')  :  -1,  ('C',  'D')  :  -4,  ('V',  'F')  :  -1,
('T',  'A')  :  0,  ('T',  'P')  :  -1,  ('B',  'P')  :  -2,  ('T',  'E')  :  -1,
('V',  'N')  :  -3,  ('P',  'G')  :  -2,  ('M',  'A')  :  -1,  ('K',  'H')  :  0,
('V',  'R')  :  -3,  ('P',  'C')  :  -4,  ('M',  'E')  :  -2,  ('K',  'L')  :  -3,
('V',  'V')  :  5,  ('M',  'I')  :  2,  ('T',  'Q')  :  -1,  ('I',  'G')  :  -4,
('P',  'K')  :  -1,  ('M',  'M')  :  7,  ('K',  'D')  :  -1,  ('I',  'C')  :  -2,
('Z',  'D')  :  1,  ('F',  'R')  :  -3,  ('X',  'K')  :  -1,  ('Q',  'D')  :  0,
('X',  'G')  :  -2,  ('Z',  'L')  :  -3,  ('X',  'C')  :  -2,  ('Z',  'H')  :  0,
('B',  'L')  :  -4,  ('B',  'H')  :  0,  ('F',  'F')  :  8,  ('X',  'W')  :  -3,
('B',  'D')  :  5,  ('D',  'A')  :  -2,  ('S',  'L')  :  -3,  ('X',  'S')  :  -1,
('F',  'N')  :  -4,  ('S',  'R')  :  -1,  ('W',  'D')  :  -5,  ('V',  'Y')  :  -1,
('W',  'L')  :  -2,  ('H',  'R')  :  0,  ('W',  'H')  :  -3,  ('H',  'N')  :  1,
('W',  'T')  :  -3,  ('T',  'T')  :  5,  ('S',  'F')  :  -3,  ('W',  'P')  :  -4,
('L',  'D')  :  -4,  ('B',  'I')  :  -4,  ('L',  'H')  :  -3,  ('S',  'N')  :  1,
('B',  'T')  :  0,  ('L',  'L')  :  5,  ('Y',  'K')  :  -2,  ('E',  'Q')  :  2,
('Y',  'G')  :  -3,  ('Z',  'S')  :  0,  ('Y',  'C')  :  -3,  ('G',  'D')  :  -1,
('B',  'V')  :  -4,  ('E',  'A')  :  -1,  ('Y',  'W')  :  2,  ('E',  'E')  :  6,
('Y',  'S')  :  -2,  ('C',  'N')  :  -2,  ('V',  'C')  :  -1,  ('T',  'H')  :  -2,
('P',  'R')  :  -3,  ('V',  'G')  :  -4,  ('T',  'L')  :  -1,  ('V',  'K')  :  -3,
('K',  'Q')  :  2,  ('R',  'A')  :  -2,  ('I',  'R')  :  -4,  ('T',  'D')  :  -1,
('P',  'F')  :  -4,  ('I',  'N')  :  -3,  ('K',  'I')  :  -3,  ('M',  'D')  :  -4,
('V',  'W')  :  -3,  ('W',  'W')  :  15,  ('M',  'H')  :  -1,  ('P',  'N')  :  -2,
('K',  'A')  :  -1,  ('M',  'L')  :  3,  ('K',  'E')  :  1,  ('Z',  'E')  :  5,
('X',  'N')  :  -1,  ('Z',  'A')  :  -1,  ('Z',  'M')  :  -1,  ('X',  'F')  :  -2,
('K',  'C')  :  -3,  ('B',  'Q')  :  0,  ('X',  'B')  :  -1,  ('B',  'M')  :  -3,
('F',  'C')  :  -2,  ('Z',  'Q')  :  4,  ('X',  'Z')  :  -1,  ('F',  'G')  :  -4,
('B',  'E')  :  1,  ('X',  'V')  :  -1,  ('F',  'K')  :  -4,  ('B',  'A')  :  -2,
('X',  'R')  :  -1,  ('D',  'D')  :  8,  ('W',  'G')  :  -3,  ('Z',  'F')  :  -4,
('S',  'Q')  :  0,  ('W',  'C')  :  -5,  ('W',  'K')  :  -3,  ('H',  'Q')  :  1,
('L',  'C')  :  -2,  ('W',  'N')  :  -4,  ('S',  'A')  :  1,  ('L',  'G')  :  -4,
('W',  'S')  :  -4,  ('S',  'E')  :  -1,  ('H',  'E')  :  0,  ('S',  'I')  :  -3,
('H',  'A')  :  -2,  ('S',  'M')  :  -2,  ('Y',  'L')  :  -1,  ('Y',  'H')  :  2,
('Y',  'D')  :  -3,  ('E',  'R')  :  0,  ('X',  'P')  :  -2,  ('G',  'G')  :  8,
('G',  'C')  :  -3,  ('E',  'N')  :  0,  ('Y',  'T')  :  -2,  ('Y',  'P')  :  -3,
('T',  'K')  :  -1,  ('A',  'A')  :  5,  ('P',  'Q')  :  -1,  ('T',  'C')  :  -1,
('V',  'H')  :  -4,  ('T',  'G')  :  -2,  ('I',  'Q')  :  -3,  ('Z',  'T')  :  -1,
('C',  'R')  :  -4,  ('V',  'P')  :  -3,  ('P',  'E')  :  -1,  ('M',  'C')  :  -2,
('K',  'N')  :  0,  ('I',  'I')  :  5,  ('P',  'A')  :  -1,  ('M',  'G')  :  -3,
('T',  'S')  :  2,  ('I',  'E')  :  -4,  ('P',  'M')  :  -3,  ('M',  'K')  :  -2,
('I',  'A')  :  -1,  ('P',  'I')  :  -3,  ('R',  'R')  :  7,  ('X',  'M')  :  -1,
('L',  'I')  :  2,  ('X',  'I')  :  -1,  ('Z',  'B')  :  2,  ('X',  'E')  :  -1,
('Z',  'N')  :  0,  ('X',  'A')  :  -1,  ('B',  'R')  :  -1,  ('B',  'N')  :  4,
('F',  'D')  :  -5,  ('X',  'Y')  :  -1,  ('Z',  'R')  :  0,  ('F',  'H')  :  -1,
('B',  'F')  :  -4,  ('F',  'L')  :  1,  ('X',  'Q')  :  -1,  ('B',  'B')  :  5		 blosum50  =  {
('W',  'F')  :  1,  ('L',  'R')  :  -3,  ('S',  'P')  :  -1,  ('V',  'T')  :  0,
('Q',  'Q')  :  7,  ('N',  'A')  :  -1,  ('Z',  'Y')  :  -2,  ('W',  'R')  :  -3,
('Q',  'A')  :  -1,  ('S',  'D')  :  0,  ('H',  'H')  :  10,  ('S',  'H')  :  -1,
('H',  'D')  :  -1,  ('L',  'N')  :  -4,  ('W',  'A')  :  -3,  ('Y',  'M')  :  0,
('G',  'R')  :  -3,  ('Y',  'I')  :  -1,  ('Y',  'E')  :  -2,  ('B',  'Y')  :  -3,
('Y',  'A')  :  -2,  ('V',  'D')  :  -4,  ('B',  'S')  :  0,  ('Y',  'Y')  :  8,
('G',  'N')  :  0,  ('E',  'C')  :  -3,  ('Y',  'Q')  :  -1,  ('Z',  'Z')  :  5,
('V',  'A')  :  0,  ('C',  'C')  :  13,  ('M',  'R')  :  -2,  ('V',  'E')  :  -3,
('T',  'N')  :  0,  ('P',  'P')  :  10,  ('V',  'I')  :  4,  ('V',  'S')  :  -2,
('Z',  'P')  :  -1,  ('V',  'M')  :  1,  ('T',  'F')  :  -2,  ('V',  'Q')  :  -3,
('K',  'K')  :  6,  ('P',  'D')  :  -1,  ('I',  'H')  :  -4,  ('I',  'D')  :  -4,
('T',  'R')  :  -1,  ('P',  'L')  :  -4,  ('K',  'G')  :  -2,  ('M',  'N')  :  -2,
('P',  'H')  :  -2,  ('F',  'Q')  :  -4,  ('Z',  'G')  :  -2,  ('X',  'L')  :  -1,
('T',  'M')  :  -1,  ('Z',  'C')  :  -3,  ('X',  'H')  :  -1,  ('D',  'R')  :  -2,
('B',  'W')  :  -5,  ('X',  'D')  :  -1,  ('Z',  'K')  :  1,  ('F',  'A')  :  -3,
('Z',  'W')  :  -2,  ('F',  'E')  :  -3,  ('D',  'N')  :  2,  ('B',  'K')  :  0,
('X',  'X')  :  -1,  ('F',  'I')  :  0,  ('B',  'G')  :  -1,  ('X',  'T')  :  0,
('F',  'M')  :  0,  ('B',  'C')  :  -3,  ('Z',  'I')  :  -3,  ('Z',  'V')  :  -3,
('S',  'S')  :  5,  ('L',  'Q')  :  -2,  ('W',  'E')  :  -3,  ('Q',  'R')  :  1,
('N',  'N')  :  7,  ('W',  'M')  :  -1,  ('Q',  'C')  :  -3,  ('W',  'I')  :  -3,
('S',  'C')  :  -1,  ('L',  'A')  :  -2,  ('S',  'G')  :  0,  ('L',  'E')  :  -3,
('W',  'Q')  :  -1,  ('H',  'G')  :  -2,  ('S',  'K')  :  0,  ('Q',  'N')  :  0,
('N',  'R')  :  -1,  ('H',  'C')  :  -3,  ('Y',  'N')  :  -2,  ('G',  'Q')  :  -2,
('Y',  'F')  :  4,  ('C',  'A')  :  -1,  ('V',  'L')  :  1,  ('G',  'E')  :  -3,
('G',  'A')  :  0,  ('K',  'R')  :  3,  ('E',  'D')  :  2,  ('Y',  'R')  :  -1,
('M',  'Q')  :  0,  ('T',  'I')  :  -1,  ('C',  'D')  :  -4,  ('V',  'F')  :  -1,
('T',  'A')  :  0,  ('T',  'P')  :  -1,  ('B',  'P')  :  -2,  ('T',  'E')  :  -1,
('V',  'N')  :  -3,  ('P',  'G')  :  -2,  ('M',  'A')  :  -1,  ('K',  'H')  :  0,
('V',  'R')  :  -3,  ('P',  'C')  :  -4,  ('M',  'E')  :  -2,  ('K',  'L')  :  -3,
('V',  'V')  :  5,  ('M',  'I')  :  2,  ('T',  'Q')  :  -1,  ('I',  'G')  :  -4,
('P',  'K')  :  -1,  ('M',  'M')  :  7,  ('K',  'D')  :  -1,  ('I',  'C')  :  -2,
('Z',  'D')  :  1,  ('F',  'R')  :  -3,  ('X',  'K')  :  -1,  ('Q',  'D')  :  0,
('X',  'G')  :  -2,  ('Z',  'L')  :  -3,  ('X',  'C')  :  -2,  ('Z',  'H')  :  0,
('B',  'L')  :  -4,  ('B',  'H')  :  0,  ('F',  'F')  :  8,  ('X',  'W')  :  -3,
('B',  'D')  :  5,  ('D',  'A')  :  -2,  ('S',  'L')  :  -3,  ('X',  'S')  :  -1,
('F',  'N')  :  -4,  ('S',  'R')  :  -1,  ('W',  'D')  :  -5,  ('V',  'Y')  :  -1,
('W',  'L')  :  -2,  ('H',  'R')  :  0,  ('W',  'H')  :  -3,  ('H',  'N')  :  1,
('W',  'T')  :  -3,  ('T',  'T')  :  5,  ('S',  'F')  :  -3,  ('W',  'P')  :  -4,
('L',  'D')  :  -4,  ('B',  'I')  :  -4,  ('L',  'H')  :  -3,  ('S',  'N')  :  1,
('B',  'T')  :  0,  ('L',  'L')  :  5,  ('Y',  'K')  :  -2,  ('E',  'Q')  :  2,
('Y',  'G')  :  -3,  ('Z',  'S')  :  0,  ('Y',  'C')  :  -3,  ('G',  'D')  :  -1,
('B',  'V')  :  -4,  ('E',  'A')  :  -1,  ('Y',  'W')  :  2,  ('E',  'E')  :  6,
('Y',  'S')  :  -2,  ('C',  'N')  :  -2,  ('V',  'C')  :  -1,  ('T',  'H')  :  -2,
('P',  'R')  :  -3,  ('V',  'G')  :  -4,  ('T',  'L')  :  -1,  ('V',  'K')  :  -3,
('K',  'Q')  :  2,  ('R',  'A')  :  -2,  ('I',  'R')  :  -4,  ('T',  'D')  :  -1,
('P',  'F')  :  -4,  ('I',  'N')  :  -3,  ('K',  'I')  :  -3,  ('M',  'D')  :  -4,
('V',  'W')  :  -3,  ('W',  'W')  :  15,  ('M',  'H')  :  -1,  ('P',  'N')  :  -2,
('K',  'A')  :  -1,  ('M',  'L')  :  3,  ('K',  'E')  :  1,  ('Z',  'E')  :  5,
('X',  'N')  :  -1,  ('Z',  'A')  :  -1,  ('Z',  'M')  :  -1,  ('X',  'F')  :  -2,
('K',  'C')  :  -3,  ('B',  'Q')  :  0,  ('X',  'B')  :  -1,  ('B',  'M')  :  -3,
('F',  'C')  :  -2,  ('Z',  'Q')  :  4,  ('X',  'Z')  :  -1,  ('F',  'G')  :  -4,
('B',  'E')  :  1,  ('X',  'V')  :  -1,  ('F',  'K')  :  -4,  ('B',  'A')  :  -2,
('X',  'R')  :  -1,  ('D',  'D')  :  8,  ('W',  'G')  :  -3,  ('Z',  'F')  :  -4,
('S',  'Q')  :  0,  ('W',  'C')  :  -5,  ('W',  'K')  :  -3,  ('H',  'Q')  :  1,
('L',  'C')  :  -2,  ('W',  'N')  :  -4,  ('S',  'A')  :  1,  ('L',  'G')  :  -4,
('W',  'S')  :  -4,  ('S',  'E')  :  -1,  ('H',  'E')  :  0,  ('S',  'I')  :  -3,
('H',  'A')  :  -2,  ('S',  'M')  :  -2,  ('Y',  'L')  :  -1,  ('Y',  'H')  :  2,
('Y',  'D')  :  -3,  ('E',  'R')  :  0,  ('X',  'P')  :  -2,  ('G',  'G')  :  8,
('G',  'C')  :  -3,  ('E',  'N')  :  0,  ('Y',  'T')  :  -2,  ('Y',  'P')  :  -3,
('T',  'K')  :  -1,  ('A',  'A')  :  5,  ('P',  'Q')  :  -1,  ('T',  'C')  :  -1,
('V',  'H')  :  -4,  ('T',  'G')  :  -2,  ('I',  'Q')  :  -3,  ('Z',  'T')  :  -1,
('C',  'R')  :  -4,  ('V',  'P')  :  -3,  ('P',  'E')  :  -1,  ('M',  'C')  :  -2,
('K',  'N')  :  0,  ('I',  'I')  :  5,  ('P',  'A')  :  -1,  ('M',  'G')  :  -3,
('T',  'S')  :  2,  ('I',  'E')  :  -4,  ('P',  'M')  :  -3,  ('M',  'K')  :  -2,
('I',  'A')  :  -1,  ('P',  'I')  :  -3,  ('R',  'R')  :  7,  ('X',  'M')  :  -1,
('L',  'I')  :  2,  ('X',  'I')  :  -1,  ('Z',  'B')  :  2,  ('X',  'E')  :  -1,
('Z',  'N')  :  0,  ('X',  'A')  :  -1,  ('B',  'R')  :  -1,  ('B',  'N')  :  4,
('F',  'D')  :  -5,  ('X',  'Y')  :  -1,  ('Z',  'R')  :  0,  ('F',  'H')  :  -1,
('B',  'F')  :  -4,  ('F',  'L')  :  1,  ('X',  'Q')  :  -1,  ('B',  'B')  :  5


Clone # 276
Anti-unification distance between two trees = 3
Total size of two trees = 73
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/__init__.py"
The first line is 152		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/__init__.py"
The first line is 144
r2  =  r1  -  acc r2  =  r1  -  gc*zoom
x1  =  X0  +  r1  *  sin(alpha) x1  =  X0  +  r1  *  sin(alpha)
y1  =  Y0  +  r1  *  cos(alpha) y1  =  Y0  +  r1  *  cos(alpha)
x2  =  X0  +  r2  *  sin(alpha) x2  =  X0  +  r2  *  sin(alpha)
y2  =  Y0  +  r2  *  cos(alpha) y2  =  Y0  +  r2  *  cos(alpha)
canvas.create_line(x1,y1,x2,y2,  fill  =  'magenta') canvas.create_line(x1,y1,x2,y2,  fill  =  'blue')


Clone # 277
Anti-unification distance between two trees = 3
Total size of two trees = 73
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Mindy/BerkeleyDB.py"
The first line is 131		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Mindy/FlatDB.py"
The first line is 144
key_list  =  table[self.primary_namespace] key_list  =  table[self.primary_namespace]
if  len(key_list)  !=  1:
raise  TypeError(
"Field  %s  has  %d  entries  but  must  have  only  one  "
"(must  be  unique)"  %  (repr(self.primary_namespace),
len(key_list)))		 if  len(key_list)  !=  1:
raise  TypeError(
"Field  %s  has  %d  entries  but  must  have  only  one  "
"(must  be  unique)"  %  (repr(unique),  len(key_list)))
key  =  key_list[0] key  =  key_list[0]
if  self.primary_table.has_key(key):
raise  TypeError("Field  %r  =  %r  already  exists"  %
(self.primary_namespace,  key))		 if  self.primary_table.has_key(key):
raise  TypeError("Field  %r  =  %r  already  exists;  must  be  unique"  %
(self.primary_namespace,  key))
self.primary_table[key]  =  "%s\t%s\t%s"  %  (filetag,
BaseDB._int_str(startpos),
BaseDB._int_str(length))		 self.primary_table[key]  =  "%s\t%s\t%s"  %  (filetag,
BaseDB._int_str(startpos),
BaseDB._int_str(length))


Clone # 278
Anti-unification distance between two trees = 2
Total size of two trees = 72
Total length of sequences = 18
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 857		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1209
catalyze  =  catalyse  =  classmethod(catalyse) catalyze  =  catalyse  =  classmethod(catalyse)
def  is_blunt(self)  :
return  False		 def  is_blunt(self)  :
return  False
is_blunt  =  classmethod(is_blunt) is_blunt  =  classmethod(is_blunt)
def  is_5overhang(self)  :
return  False		 def  is_5overhang(self)  :
return  False
is_5overhang  =  classmethod(is_5overhang) is_5overhang  =  classmethod(is_5overhang)
def  is_3overhang(self)  :
return  False		 def  is_3overhang(self)  :
return  True
is_3overhang  =  classmethod(is_3overhang) is_3overhang  =  classmethod(is_3overhang)
def  overhang(self)  :
return  'unknown'		 def  overhang(self)  :
return  "3' &nbsp;overhang"
overhang  =  classmethod(overhang) overhang  =  classmethod(overhang)


Clone # 279
Anti-unification distance between two trees = 2
Total size of two trees = 72
Total length of sequences = 18
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 857		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1090
catalyze  =  catalyse  =  classmethod(catalyse) catalyze  =  catalyse  =  classmethod(catalyse)
def  is_blunt(self)  :
return  False		 def  is_blunt(self)  :
return  False
is_blunt  =  classmethod(is_blunt) is_blunt  =  classmethod(is_blunt)
def  is_5overhang(self)  :
return  False		 def  is_5overhang(self)  :
return  True
is_5overhang  =  classmethod(is_5overhang) is_5overhang  =  classmethod(is_5overhang)
def  is_3overhang(self)  :
return  False		 def  is_3overhang(self)  :
return  False
is_3overhang  =  classmethod(is_3overhang) is_3overhang  =  classmethod(is_3overhang)
def  overhang(self)  :
return  'unknown'		 def  overhang(self)  :
return  "5' &nbsp;overhang"
overhang  =  classmethod(overhang) overhang  =  classmethod(overhang)


Clone # 280
Anti-unification distance between two trees = 2
Total size of two trees = 72
Total length of sequences = 18
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 857		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 972
catalyze  =  catalyse  =  classmethod(catalyse) catalyze  =  catalyse  =  classmethod(catalyse)
def  is_blunt(self)  :
return  False		 def  is_blunt(self)  :
return  True
is_blunt  =  classmethod(is_blunt) is_blunt  =  classmethod(is_blunt)
def  is_5overhang(self)  :
return  False		 def  is_5overhang(self)  :
return  False
is_5overhang  =  classmethod(is_5overhang) is_5overhang  =  classmethod(is_5overhang)
def  is_3overhang(self)  :
return  False		 def  is_3overhang(self)  :
return  False
is_3overhang  =  classmethod(is_3overhang) is_3overhang  =  classmethod(is_3overhang)
def  overhang(self)  :
return  'unknown'		 def  overhang(self)  :
return  'blunt'
overhang  =  classmethod(overhang) overhang  =  classmethod(overhang)


Clone # 281
Anti-unification distance between two trees = 4
Total size of two trees = 72
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 312		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 291
global  _fast_dbxref_sp_embl_data global  _fast_dbxref_sp_prosite_data
if  _fast_dbxref_sp_embl_data  is  None:
from  Bio.expressions.swissprot  import  sprot38
_fast_dbxref_sp_embl_data  =  _fixup_sp_pattern(
sprot38.real_DR_embl)		 if  _fast_dbxref_sp_prosite_data  is  None:
from  Bio.expressions.swissprot  import  sprot38
_fast_dbxref_sp_prosite_data  =  _fixup_sp_pattern(
sprot38.real_DR_prosite)
pat,  dbstyle,  primary_type,  secondary_type  =  _fast_dbxref_sp_embl_data pat,  dbstyle,  primary_type,  secondary_type  =  _fast_dbxref_sp_prosite_data
m  =  pat.match(s) m  =  pat.match(s)
assert  m  is  not  None,  "Ill-formated  sp-embl  dxbref:  %r"  %  s assert  m  is  not  None,  "Ill-formated  sp-prosite  dxbref:  %r"  %  s
return  (
(dbstyle,  m.group("dbname"),  primary_type,
m.group("primary_dbid"),  0),
(dbstyle,  m.group("dbname"),  secondary_type,
m.group("secondary_dbid"),  0)		 return  (
(dbstyle,  m.group("dbname"),  primary_type,
m.group("primary_dbid"),  0),
(dbstyle,  m.group("dbname"),  secondary_type,
m.group("secondary_dbid"),  0)


Clone # 282
Anti-unification distance between two trees = 4
Total size of two trees = 72
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 312		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 269
global  _fast_dbxref_sp_embl_data global  _fast_dbxref_sp_general_data
if  _fast_dbxref_sp_embl_data  is  None:
from  Bio.expressions.swissprot  import  sprot38
_fast_dbxref_sp_embl_data  =  _fixup_sp_pattern(
sprot38.real_DR_embl)		 if  _fast_dbxref_sp_general_data  is  None:
from  Bio.expressions.swissprot  import  sprot38
_fast_dbxref_sp_general_data  =  _fixup_sp_pattern(
sprot38.real_DR_general)
pat,  dbstyle,  primary_type,  secondary_type  =  _fast_dbxref_sp_embl_data pat,  dbstyle,  primary_type,  secondary_type  =  _fast_dbxref_sp_general_data
m  =  pat.match(s) m  =  pat.match(s)
assert  m  is  not  None,  "Ill-formated  sp-embl  dxbref:  %r"  %  s assert  m  is  not  None,  "Ill-formated  sp-general  dxbref:  %r"  %  s
return  (
(dbstyle,  m.group("dbname"),  primary_type,
m.group("primary_dbid"),  0),
(dbstyle,  m.group("dbname"),  secondary_type,
m.group("secondary_dbid"),  0)		 return  (
(dbstyle,  m.group("dbname"),  primary_type,
m.group("primary_dbid"),  0),
(dbstyle,  m.group("dbname"),  secondary_type,
m.group("secondary_dbid"),  0)


Clone # 283
Anti-unification distance between two trees = 4
Total size of two trees = 72
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 291		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 269
global  _fast_dbxref_sp_prosite_data global  _fast_dbxref_sp_general_data
if  _fast_dbxref_sp_prosite_data  is  None:
from  Bio.expressions.swissprot  import  sprot38
_fast_dbxref_sp_prosite_data  =  _fixup_sp_pattern(
sprot38.real_DR_prosite)		 if  _fast_dbxref_sp_general_data  is  None:
from  Bio.expressions.swissprot  import  sprot38
_fast_dbxref_sp_general_data  =  _fixup_sp_pattern(
sprot38.real_DR_general)
pat,  dbstyle,  primary_type,  secondary_type  =  _fast_dbxref_sp_prosite_data pat,  dbstyle,  primary_type,  secondary_type  =  _fast_dbxref_sp_general_data
m  =  pat.match(s) m  =  pat.match(s)
assert  m  is  not  None,  "Ill-formated  sp-prosite  dxbref:  %r"  %  s assert  m  is  not  None,  "Ill-formated  sp-general  dxbref:  %r"  %  s
return  (
(dbstyle,  m.group("dbname"),  primary_type,
m.group("primary_dbid"),  0),
(dbstyle,  m.group("dbname"),  secondary_type,
m.group("secondary_dbid"),  0)		 return  (
(dbstyle,  m.group("dbname"),  primary_type,
m.group("primary_dbid"),  0),
(dbstyle,  m.group("dbname"),  secondary_type,
m.group("secondary_dbid"),  0)


Clone # 284
Anti-unification distance between two trees = 4
Total size of two trees = 72
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/formatdefs/search.py"
The first line is 21		Source file "/home/peter/clone_digger/biopython-1.44/Bio/formatdefs/search.py"
The first line is 15
blastn  =  FormatGroup(
name  =  "blastn",
multirecord  =  0,		 blastp  =  FormatGroup(
name  =  "blastp",
multirecord  =  0,
blast.add(blastn) blast.add(blastp)
blastx  =  FormatGroup(
name  =  "blastx",
multirecord  =  0,		 blastn  =  FormatGroup(
name  =  "blastn",
multirecord  =  0,
blast.add(blastx) blast.add(blastn)
tblastn  =  FormatGroup(
name  =  "tblastn",
multirecord  =  0,		 blastx  =  FormatGroup(
name  =  "blastx",
multirecord  =  0,
blast.add(tblastn) blast.add(blastx)
tblastx  =  FormatGroup(
name  =  "tblastx",
multirecord  =  0,		 tblastn  =  FormatGroup(
name  =  "tblastn",
multirecord  =  0,
blast.add(tblastx) blast.add(tblastn)


Clone # 285
Anti-unification distance between two trees = 3
Total size of two trees = 72
Total length of sequences = 18
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1090		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 972
catalyze  =  catalyse  =  classmethod(catalyse) catalyze  =  catalyse  =  classmethod(catalyse)
def  is_blunt(self)  :
return  False		 def  is_blunt(self)  :
return  True
is_blunt  =  classmethod(is_blunt) is_blunt  =  classmethod(is_blunt)
def  is_5overhang(self)  :
return  True		 def  is_5overhang(self)  :
return  False
is_5overhang  =  classmethod(is_5overhang) is_5overhang  =  classmethod(is_5overhang)
def  is_3overhang(self)  :
return  False		 def  is_3overhang(self)  :
return  False
is_3overhang  =  classmethod(is_3overhang) is_3overhang  =  classmethod(is_3overhang)
def  overhang(self)  :
return  "5' &nbsp;overhang"		 def  overhang(self)  :
return  'blunt'
overhang  =  classmethod(overhang) overhang  =  classmethod(overhang)


Clone # 286
Anti-unification distance between two trees = 4
Total size of two trees = 70
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 200		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 165
output  =  output  +  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'o_id'  +  str(  option  ) composite_key  =  prefix  +  'p_id'  +  str(  product  )
output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'o_coeff'  +  str(  option  ) composite_key  =  prefix  +  'p_coeff'  +  str(  product  )
output  =  output  +  '%s;\n'  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  '%s'  %  get_entry(  self.cell_dict,  composite_key  )
output  =  output  +  ';\n' output  =  output  +  ';\n'


Clone # 287
Anti-unification distance between two trees = 4
Total size of two trees = 70
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 200		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 153
output  =  output  +  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'o_id'  +  str(  option  ) composite_key  =  prefix  +  's_id'  +  str(  substrate  )
output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'o_coeff'  +  str(  option  ) composite_key  =  prefix  +  's_coeff'  +  str(  substrate  )
output  =  output  +  '%s;\n'  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  '%s'  %  get_entry(  self.cell_dict,  composite_key  )
output  =  output  +  ';\n' output  =  output  +  ';\n'


Clone # 288
Anti-unification distance between two trees = 4
Total size of two trees = 70
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 187		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 165
output  =  output  +  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'e_id'  +  str(  effector  ) composite_key  =  prefix  +  'p_id'  +  str(  product  )
output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'e_coeff'  +  str(  effector  ) composite_key  =  prefix  +  'p_coeff'  +  str(  product  )
output  =  output  +  '%s;\n'  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  '%s'  %  get_entry(  self.cell_dict,  composite_key  )
output  =  output  +  ';\n' output  =  output  +  ';\n'


Clone # 289
Anti-unification distance between two trees = 4
Total size of two trees = 70
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 187		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 153
output  =  output  +  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'e_id'  +  str(  effector  ) composite_key  =  prefix  +  's_id'  +  str(  substrate  )
output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  ':%s  '  %  get_entry(  self.cell_dict,  composite_key  )
composite_key  =  prefix  +  'e_coeff'  +  str(  effector  ) composite_key  =  prefix  +  's_coeff'  +  str(  substrate  )
output  =  output  +  '%s;\n'  %  get_entry(  self.cell_dict,  composite_key  ) output  =  output  +  '%s'  %  get_entry(  self.cell_dict,  composite_key  )
output  =  output  +  ';\n' output  =  output  +  ';\n'


Clone # 290
Anti-unification distance between two trees = 3
Total size of two trees = 70
Total length of sequences = 26
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 26		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/nbrf_format.py"
The first line is 15
import  string import  string
import  Martel import  Martel
from  Martel  import  RecordReader from  Martel  import  RecordReader
from  Martel  import  Str from  Martel  import  Str
from  Martel  import  AnyEol from  Martel  import  AnyEol,  UntilEol
from  Martel  import  ToEol from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  Group
from  Martel  import  Alt from  Martel  import  Alt,  Opt
from  Martel  import  Rep from  Martel  import  Rep
from  Martel  import  Rep1 from  Martel  import  Rep1
from  Martel  import  Any from  Martel  import  Any
from  Martel  import  AnyBut from  Martel  import  AnyBut
from  Martel  import  RepN from  Martel  import  UntilSep


Clone # 291
Anti-unification distance between two trees = 1
Total size of two trees = 70
Total length of sequences = 26
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/ecell_format.py"
The first line is 23		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 26
import  string import  string
import  Martel import  Martel
from  Martel  import  RecordReader from  Martel  import  RecordReader
from  Martel  import  Str from  Martel  import  Str
from  Martel  import  AnyEol from  Martel  import  AnyEol
from  Martel  import  ToEol from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  Group
from  Martel  import  Alt from  Martel  import  Alt
from  Martel  import  Rep from  Martel  import  Rep
from  Martel  import  Rep1 from  Martel  import  Rep1
from  Martel  import  Any from  Martel  import  Any
from  Martel  import  AnyBut from  Martel  import  AnyBut
from  Martel  import  Expression from  Martel  import  RepN


Clone # 292
Anti-unification distance between two trees = 3
Total size of two trees = 70
Total length of sequences = 26
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/ecell_format.py"
The first line is 23		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/nbrf_format.py"
The first line is 15
import  string import  string
import  Martel import  Martel
from  Martel  import  RecordReader from  Martel  import  RecordReader
from  Martel  import  Str from  Martel  import  Str
from  Martel  import  AnyEol from  Martel  import  AnyEol,  UntilEol
from  Martel  import  ToEol from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  Group
from  Martel  import  Alt from  Martel  import  Alt,  Opt
from  Martel  import  Rep from  Martel  import  Rep
from  Martel  import  Rep1 from  Martel  import  Rep1
from  Martel  import  Any from  Martel  import  Any
from  Martel  import  AnyBut from  Martel  import  AnyBut
from  Martel  import  Expression from  Martel  import  UntilSep


Clone # 293
Anti-unification distance between two trees = 1
Total size of two trees = 68
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Pathway/Rep/Graph.py"
The first line is 43		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Pathway/Rep/MultiGraph.py"
The first line is 40
def  __str__(self):
nodenum  =  len(self.__adjacency_list.keys())
edgenum  =  reduce(lambda  x,y:  x+y,
map(len,  self.__adjacency_list.values()))
labelnum  =  len(self.__label_map.keys())
return  "<Graph:  "  +  \
str(nodenum)  +  "  node(s),  "  +  \
str(edgenum)  +  "  edge(s),  "  +  \
str(labelnum)  +  "  unique  label(s)>"		 def  __str__(self):
nodenum  =  len(self.__adjacency_list.keys())
edgenum  =  reduce(lambda  x,y:  x+y,
map(len,  self.__adjacency_list.values()))
labelnum  =  len(self.__label_map.keys())
return  "<MultiGraph:  "  +  \
str(nodenum)  +  "  node(s),  "  +  \
str(edgenum)  +  "  edge(s),  "  +  \
str(labelnum)  +  "  unique  label(s)>"
def  add_node(self,  node):
if  not  self.__adjacency_list.has_key(node):
self.__adjacency_list[node]  =  HashSet()		 def  add_node(self,  node):
if  not  self.__adjacency_list.has_key(node):
self.__adjacency_list[node]  =  HashSet()


Clone # 294
Anti-unification distance between two trees = 4
Total size of two trees = 68
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/Distribution.py"
The first line is 50		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/Comparative.py"
The first line is 56
width,  height  =  self.page_size width,  height  =  self.page_size
cur_drawing  =  Drawing(width,  height) cur_drawing  =  Drawing(width,  height)
self._draw_title(cur_drawing,  title,  width,  height) self._draw_title(cur_drawing,  title,  width,  height)
cur_x_pos  =  inch  *  .5 start_x  =  inch  *  .5
end_x_pos  =  width  -  inch  *  .5 end_x  =  width  -  inch  *  .5
cur_y_pos  =  height  -  1.5  *  inch end_y  =  height  -  1.5  *  inch
end_y_pos  =  .5  *  inch start_y  =  .5  *  inch


Clone # 295
Anti-unification distance between two trees = 3
Total size of two trees = 67
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 40
assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists"
assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists"
s  =  """if  1:
"""  %  (attrname,  attrname,  attrname)		 s  =  """if  1:
"""  %  (attrname,  key)
d  =  {} d  =  {}
exec  s  in  d exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"]) setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"]) setattr(klass,  "end_"  +  tag,  d["end"])


Clone # 296
Anti-unification distance between two trees = 3
Total size of two trees = 67
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 40		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 26
assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists"
assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists"
s  =  """if  1:
"""  %  (attrname,  key)		 s  =  """if  1:
"""  %  attrname
d  =  {} d  =  {}
exec  s  in  d exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"]) setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"]) setattr(klass,  "end_"  +  tag,  d["end"])


Clone # 297
Anti-unification distance between two trees = 3
Total size of two trees = 67
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 40		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 12
assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists"
assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists"
s  =  """if  1:
"""  %  (attrname,  key)		 s  =  """if  1:
"""  %  attrname
d  =  {} d  =  {}
exec  s  in  d exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"]) setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"]) setattr(klass,  "end_"  +  tag,  d["end"])


Clone # 298
Anti-unification distance between two trees = 4
Total size of two trees = 67
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 110		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 54
assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists"
assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists"
s  =  """if  1:
"""  %  locals()		 s  =  """if  1:
"""  %  (tag, &nbsp;tag,  tag,  attrname)
d  =  {"Decode":  Decode} d  =  {"Decode":  Decode}
exec  s  in  d exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"]) setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"]) setattr(klass,  "end_"  +  tag,  d["end"])


Clone # 299
Anti-unification distance between two trees = 2
Total size of two trees = 66
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 12
assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists"
assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists"
s  =  """if  1:
"""  %  (attrname,  attrname,  attrname)		 s  =  """if  1:
"""  %  attrname
d  =  {} d  =  {}
exec  s  in  d exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"]) setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"]) setattr(klass,  "end_"  +  tag,  d["end"])


Clone # 300
Anti-unification distance between two trees = 4
Total size of two trees = 66
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/__init__.py"
The first line is 62		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/__init__.py"
The first line is 31
class  Iterator:
def  __init__(self,  handle,  parser  =  None):
self.handle  =  File.UndoHandle(  handle  )
self._reader  =  RecordReader.StartsWith(  self.handle,  '>>'    )
self._parser  =  parser
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser  =  None):
self.handle  =  File.UndoHandle(  handle  )
self._reader  =  RecordReader.StartsWith(  self.handle,  ">"    )
self._parser  =  parser
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)


Clone # 301
Anti-unification distance between two trees = 2
Total size of two trees = 66
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 213		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 100
lines  =  [] lines  =  []
while  1:
line  =  self._uhandle.readline()
if  not  line:
break
lines.append(line)
if  line[:2]  ==  '//':
break		 while  1:
line  =  self._uhandle.readline()
if  not  line:
break
lines.append(line)
if  line[:5]  ==  '{END}':
break</span>
if  not  lines:
return  None		 if  not  lines:
return  None
data  =  string.join(lines,  '') data  =  string.join(lines,  '')
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))		 if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data return  data


Clone # 302
Anti-unification distance between two trees = 4
Total size of two trees = 66
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 461		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 483
def  _scan_nr(self,  uhandle,  consumer):
self._scan_line('NR',  uhandle,  consumer.numerical_results,
any_number=1)		 def  _scan_rl(self,  uhandle,  consumer):
self._scan_line('RL',  uhandle,  consumer.reference_location,
any_number=1)
def  _scan_cc(self,  uhandle,  consumer):
self._scan_line('CC',  uhandle,  consumer.comment,  any_number=1)		 def  _scan_cc(self,  uhandle,  consumer):
self._scan_line('CC',  uhandle,  consumer.comment,  any_number=1)
def  _scan_dr(self,  uhandle,  consumer):
self._scan_line('DR',  uhandle,  consumer.database_reference,
any_number=1)		 def  _scan_dr(self,  uhandle,  consumer):
self._scan_line('DR',  uhandle,  consumer.database_cross_reference,
any_number=1)


Clone # 303
Anti-unification distance between two trees = 1
Total size of two trees = 64
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Pattern.py"
The first line is 64		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Pattern.py"
The first line is 84
flg  =  (pattern[:2]  ==  "[<") flg  =  (pattern[:2]  ==  "[<")
s  =  string.replace(pattern,  "{",  "[^") s  =  string.replace(pattern,  "{",  "[^")
s  =  string.translate(s,  _prosite_trans,  "-.") s  =  string.translate(s,  _prosite_trans,  ".")
if  flg:
i  =  string.index(s,  "]")
s  =  "(?:^|["  +  s[2:i]  +  "])"  +  s[i+1:]		 if  flg:
i  =  string.index(s,  "]")
s  =  "(?:^|["  +  s[2:i]  +  "])"  +  s[i+1:]


Clone # 304
Anti-unification distance between two trees = 3
Total size of two trees = 64
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/__init__.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/__init__.py"
The first line is 57
class  Iterator:
def  __init__(self,  handle,  parser  =  None):
self.handle  =  File.UndoHandle(  handle  )
self._reader  =  RecordReader.Everything(  self.handle  )
self._parser  =  parser
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser  =  None):
self.handle  =  File.UndoHandle(  handle  )
self._reader  =  RecordReader.Everything(  self.handle  )
self._parser  =  parser
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)


Clone # 305
Anti-unification distance between two trees = 1
Total size of two trees = 64
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 338		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 327
class  apad(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))
ATTLIST  =  Bio.EUtils.POM.AttributeList([Bio.EUtils.POM.XMLAttribute('with',  1,  11,  None),  Bio.EUtils.POM.XMLAttribute('width',  1,  11,  None),  Bio.EUtils.POM.XMLAttribute('align',  ['left',  'right'],  13,  u'right')])		 class  pad(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))
ATTLIST  =  Bio.EUtils.POM.AttributeList([Bio.EUtils.POM.XMLAttribute('with',  1,  11,  None),  Bio.EUtils.POM.XMLAttribute('width',  1,  11,  None),  Bio.EUtils.POM.XMLAttribute('align',  ['left',  'right'],  13,  u'right')])


Clone # 306
Anti-unification distance between two trees = 4
Total size of two trees = 64
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Emboss/Primer.py"
The first line is 215		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Emboss/Primer.py"
The first line is 200
def  reverse_start(self,  start):
self._cur_primer.reverse_start  =  int(start)		 def  forward_start(self,  start):
self._cur_primer.forward_start  =  int(start)
def  reverse_length(self,  length):
self._cur_primer.reverse_length  =  int(length)		 def  forward_length(self,  length):
self._cur_primer.forward_length  =  int(length)
def  reverse_tm(self,  tm):
self._cur_primer.reverse_tm  =  float(tm)		 def  forward_tm(self,  tm):
self._cur_primer.forward_tm  =  float(tm)
def  reverse_gc(self,  gc):
self._cur_primer.reverse_gc  =  float(gc)		 def  forward_gc(self,  gc):
self._cur_primer.forward_gc  =  float(gc)


Clone # 307
Anti-unification distance between two trees = 4
Total size of two trees = 64
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Emboss/Primer.py"
The first line is 230		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Emboss/Primer.py"
The first line is 200
def  internal_start(self,  start):
self._cur_primer.internal_start  =  int(start)		 def  forward_start(self,  start):
self._cur_primer.forward_start  =  int(start)
def  internal_length(self,  length):
self._cur_primer.internal_length  =  int(length)		 def  forward_length(self,  length):
self._cur_primer.forward_length  =  int(length)
def  internal_tm(self,  tm):
self._cur_primer.internal_tm  =  float(tm)		 def  forward_tm(self,  tm):
self._cur_primer.forward_tm  =  float(tm)
def  internal_gc(self,  gc):
self._cur_primer.internal_gc  =  float(gc)		 def  forward_gc(self,  gc):
self._cur_primer.forward_gc  =  float(gc)


Clone # 308
Anti-unification distance between two trees = 3
Total size of two trees = 64
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Des.py"
The first line is 55		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Cla.py"
The first line is 60
class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)


Clone # 309
Anti-unification distance between two trees = 3
Total size of two trees = 64
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Des.py"
The first line is 55		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Raf.py"
The first line is 287
class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)


Clone # 310
Anti-unification distance between two trees = 3
Total size of two trees = 64
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Des.py"
The first line is 55		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Hie.py"
The first line is 57
class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)


Clone # 311
Anti-unification distance between two trees = 3
Total size of two trees = 64
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Cla.py"
The first line is 60		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Raf.py"
The first line is 287
class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)


Clone # 312
Anti-unification distance between two trees = 3
Total size of two trees = 64
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Cla.py"
The first line is 60		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Hie.py"
The first line is 57
class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)


Clone # 313
Anti-unification distance between two trees = 3
Total size of two trees = 64
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Raf.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/Hie.py"
The first line is 57
class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser=None):
if  type(handle)  is  not  FileType  and  type(handle)  is  not  InstanceType:
raise  TypeError,  "I  expected  a  file  handle  or  file-like  object"
self._handle  =  handle
self._parser  =  parser
def  next(self):
while  1:
line  =  self._handle.readline()
if  not  line:  return  None
if  line[0]  !='#':    break    #  Not  a  comment  line
if  self._parser  is  not  None  :
return  self._parser.parse(line)
return  line
def  __iter__(self):
return  iter(self.next,  None)


Clone # 314
Anti-unification distance between two trees = 4
Total size of two trees = 64
Total length of sequences = 24
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 23		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 26
import  string import  string
import  Martel import  Martel
from  Martel  import  RecordReader from  Martel  import  RecordReader
from  Martel  import  Str from  Martel  import  Str
from  Martel  import  AnyEol from  Martel  import  AnyEol
from  Martel  import  ToEol from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  Group
from  Martel  import  Alt from  Martel  import  Alt
from  Martel  import  Opt from  Martel  import  Rep
from  Martel  import  Rep from  Martel  import  Rep1
from  Martel  import  Rep1 from  Martel  import  Any
from  Martel  import  Any from  Martel  import  AnyBut


Clone # 315
Anti-unification distance between two trees = 4
Total size of two trees = 64
Total length of sequences = 24
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/ecell_format.py"
The first line is 23		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 23
import  string import  string
import  Martel import  Martel
from  Martel  import  RecordReader from  Martel  import  RecordReader
from  Martel  import  Str from  Martel  import  Str
from  Martel  import  AnyEol from  Martel  import  AnyEol
from  Martel  import  ToEol from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  Group
from  Martel  import  Alt from  Martel  import  Alt
from  Martel  import  Rep from  Martel  import  Opt
from  Martel  import  Rep1 from  Martel  import  Rep
from  Martel  import  Any from  Martel  import  Rep1
from  Martel  import  AnyBut from  Martel  import  Any


Clone # 316
Anti-unification distance between two trees = 3
Total size of two trees = 62
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 292		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 277
_settag(feature_location_start,  NS  +  "feature_location_start") _settag(feature,  NS  +  "feature")
def  feature_location_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_end",  expr)		 def  feature_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_name",  expr)
_settag(feature_location_end,  NS  +  "feature_location_end") _settag(feature_name,  NS  +  "feature_name")
def  feature_description(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_description",  expr)		 def  feature_location(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location",  expr)
_settag(feature_description,  NS  +  "feature_description") _settag(feature_location,  NS  +  "feature_location")


Clone # 317
Anti-unification distance between two trees = 3
Total size of two trees = 62
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 292		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 315
_settag(feature_location_start,  NS  +  "feature_location_start") _settag(feature_qualifier,  NS  +  "feature_qualifier")
def  feature_location_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_end",  expr)		 def  feature_qualifier_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_qualifier_name",  expr)
_settag(feature_location_end,  NS  +  "feature_location_end") _settag(feature_qualifier_name,  NS  +  "feature_qualifier_name")
def  feature_description(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_description",  expr)		 def  feature_qualifier_description(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_qualifier_description",  expr)
_settag(feature_description,  NS  +  "feature_description") _settag(feature_qualifier_description,  NS  +  "feature_qualifier_description")


Clone # 318
Anti-unification distance between two trees = 3
Total size of two trees = 62
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 315
_settag(feature_location,  NS  +  "feature_location") _settag(feature_qualifier,  NS  +  "feature_qualifier")
def  feature_location_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_start",  expr)		 def  feature_qualifier_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_qualifier_name",  expr)
_settag(feature_location_start,  NS  +  "feature_location_start") _settag(feature_qualifier_name,  NS  +  "feature_qualifier_name")
def  feature_location_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_end",  expr)		 def  feature_qualifier_description(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_qualifier_description",  expr)
_settag(feature_location_end,  NS  +  "feature_location_end") _settag(feature_qualifier_description,  NS  +  "feature_qualifier_description")


Clone # 319
Anti-unification distance between two trees = 3
Total size of two trees = 62
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 282		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 315
_settag(feature_name,  NS  +  "feature_name") _settag(feature_qualifier,  NS  +  "feature_qualifier")
def  feature_location(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location",  expr)		 def  feature_qualifier_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_qualifier_name",  expr)
_settag(feature_location,  NS  +  "feature_location") _settag(feature_qualifier_name,  NS  +  "feature_qualifier_name")
def  feature_location_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location_start",  expr)		 def  feature_qualifier_description(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_qualifier_description",  expr)
_settag(feature_location_start,  NS  +  "feature_location_start") _settag(feature_qualifier_description,  NS  +  "feature_qualifier_description")


Clone # 320
Anti-unification distance between two trees = 3
Total size of two trees = 62
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 277		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 315
_settag(feature,  NS  +  "feature") _settag(feature_qualifier,  NS  +  "feature_qualifier")
def  feature_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_name",  expr)		 def  feature_qualifier_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_qualifier_name",  expr)
_settag(feature_name,  NS  +  "feature_name") _settag(feature_qualifier_name,  NS  +  "feature_qualifier_name")
def  feature_location(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_location",  expr)		 def  feature_qualifier_description(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group(NS  +  "feature_qualifier_description",  expr)
_settag(feature_location,  NS  +  "feature_location") _settag(feature_qualifier_description,  NS  +  "feature_qualifier_description")


Clone # 321
Anti-unification distance between two trees = 4
Total size of two trees = 62
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Emboss/Primer.py"
The first line is 227		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Emboss/Primer.py"
The first line is 212
def  reverse_seq(self,  seq):
self._cur_primer.reverse_seq  =  seq		 def  forward_seq(self,  seq):
self._cur_primer.forward_seq  =  seq
def  internal_start(self,  start):
self._cur_primer.internal_start  =  int(start)		 def  reverse_start(self,  start):
self._cur_primer.reverse_start  =  int(start)
def  internal_length(self,  length):
self._cur_primer.internal_length  =  int(length)		 def  reverse_length(self,  length):
self._cur_primer.reverse_length  =  int(length)
def  internal_tm(self,  tm):
self._cur_primer.internal_tm  =  float(tm)		 def  reverse_tm(self,  tm):
self._cur_primer.reverse_tm  =  float(tm)


Clone # 322
Anti-unification distance between two trees = 0
Total size of two trees = 62
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Align/AlignInfo.py"
The first line is 147		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Align/AlignInfo.py"
The first line is 91
max_atoms  =  [] max_atoms  =  []
max_size  =  0 max_size  =  0
for  atom  in  atom_dict.keys():
if  atom_dict[atom]  >  max_size:
max_atoms  =  [atom]
max_size  =  atom_dict[atom]
elif  atom_dict[atom]  ==  max_size:
max_atoms.append(atom)		 for  atom  in  atom_dict.keys():
if  atom_dict[atom]  >  max_size:
max_atoms  =  [atom]
max_size  =  atom_dict[atom]
elif  atom_dict[atom]  ==  max_size:
max_atoms.append(atom)
if  require_multiple  and  num_atoms  ==  1:
consensus  =  consensus  +  ambiguous
elif  (len(max_atoms)  ==  1)  and  ((float(max_size)/float(num_atoms))
>=  threshold):
consensus  =  consensus  +  max_atoms[0]
consensus  =  consensus  +  ambiguous		 if  require_multiple  and  num_atoms  ==  1:
consensus  =  consensus  +  ambiguous
elif  (len(max_atoms)  ==  1)  and  ((float(max_size)/float(num_atoms))
>=  threshold):
consensus  =  consensus  +  max_atoms[0]
consensus  =  consensus  +  ambiguous


Clone # 323
Anti-unification distance between two trees = 2
Total size of two trees = 61
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/PrintFormat.py"
The first line is 356		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/PrintFormat.py"
The first line is 331
l  =  line[0:(length-1)] l  =  line[0:59]
lineo  =  Join((l,str(key),s,'\n')) lineo  =  Join((l,  str(key),  s,  '\n'))
line2  =  Join((l,a,'\n')) line2  =  Join((l,  a,  '\n'))
linetot  =  Join((lineo,  line2)) linetot  =  Join((lineo,  line2))
map  =  Join((map,  linetot)) map  =  Join((map,  linetot))
break break


Clone # 324
Anti-unification distance between two trees = 4
Total size of two trees = 61
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 325
Anti-unification distance between two trees = 4
Total size of two trees = 60
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_010319_format.py"
The first line is 218		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 235
group_elem("SummaryForPatientsIn",  Ref_template) group_elem("CommentOn",  Ref_template)
group_elem("CommentOn",  Ref_template) group_elem("CommentIn",  Ref_template)
group_elem("CommentIn",  Ref_template) group_elem("ErratumIn",  Ref_template)
group_elem("ErratumIn",  Ref_template) group_elem("ErratumFor",  Ref_template)
group_elem("RepublishedFrom",  Ref_template) group_elem("RepublishedFrom",  Ref_template)
group_elem("RepublishedIn",  Ref_template) group_elem("RepublishedIn",  Ref_template)
group_elem("RetractionOf",  Ref_template) group_elem("RetractionOf",  Ref_template)
group_elem("RetractionIn",  Ref_template) group_elem("RetractionIn",  Ref_template)
group_elem("UpdateIn",  Ref_template) group_elem("UpdateIn",  Ref_template)
group_elem("UpdateOf",  Ref_template) group_elem("UpdateOf",  Ref_template)


Clone # 326
Anti-unification distance between two trees = 4
Total size of two trees = 60
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 223		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 235
group_elem("SummaryForPatientsIn",  Ref_template) group_elem("CommentOn",  Ref_template)
group_elem("CommentOn",  Ref_template) group_elem("CommentIn",  Ref_template)
group_elem("CommentIn",  Ref_template) group_elem("ErratumIn",  Ref_template)
group_elem("ErratumIn",  Ref_template) group_elem("ErratumFor",  Ref_template)
group_elem("RepublishedFrom",  Ref_template) group_elem("RepublishedFrom",  Ref_template)
group_elem("RepublishedIn",  Ref_template) group_elem("RepublishedIn",  Ref_template)
group_elem("RetractionOf",  Ref_template) group_elem("RetractionOf",  Ref_template)
group_elem("RetractionIn",  Ref_template) group_elem("RetractionIn",  Ref_template)
group_elem("UpdateIn",  Ref_template) group_elem("UpdateIn",  Ref_template)
group_elem("UpdateOf",  Ref_template) group_elem("UpdateOf",  Ref_template)


Clone # 327
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 328
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 329
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 330
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 331
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 332
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 333
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 334
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 335
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 336
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 337
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 338
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 339
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 340
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 341
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 342
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 343
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 344
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 345
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 346
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 347
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 348
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 349
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 350
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 351
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 352
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 353
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 354
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 355
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 356
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 357
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 358
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 359
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 360
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 361
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 362
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 363
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 364
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 365
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 366
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 367
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 368
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 369
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 370
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 371
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 372
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 373
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 374
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 375
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 376
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 377
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 378
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 379
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 380
Anti-unification distance between two trees = 1
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 381
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 382
Anti-unification distance between two trees = 2
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 383
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 384
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 385
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 386
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 387
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 388
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 389
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 390
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 391
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 392
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 393
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 394
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 395
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 396
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 397
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 398
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 399
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 400
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 401
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 402
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 403
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 404
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 405
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 406
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 407
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 408
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 409
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 410
Anti-unification distance between two trees = 2
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 411
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 412
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 413
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 414
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 415
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 416
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 417
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 418
Anti-unification distance between two trees = 1
Total size of two trees = 60
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Scanner.py"
The first line is 1416		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Scanner.py"
The first line is 1426
g  =  GenBankScanner() g  =  GenBankScanner()
for  record  in  g.parse_records(StringIO(gbk_example),do_features=False)  :
print  record.id,  record.name,  record.description
print  record.seq		 for  record  in  g.parse_records(StringIO(gbk_example2),do_features=False)  :
print  record.id,  record.name,  record.description
print  record.seq
g  =  GenBankScanner() g  =  GenBankScanner()
for  record  in  g.parse_records(StringIO(gbk_example),do_features=True)  :
print  record.id,  record.name,  record.description
print  record.seq		 for  record  in  g.parse_records(StringIO(gbk_example2),do_features=True)  :
print  record.id,  record.name,  record.description
print  record.seq


Clone # 419
Anti-unification distance between two trees = 1
Total size of two trees = 60
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 249		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 254
class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
ATTLIST  =  Bio.EUtils.POM.AttributeList([Bio.EUtils.POM.XMLAttribute('LNG',  ['DA',  'DE',  'EN',  'EL',  'ES',  'FR',  'IT',  'IW',  'JA',  'NL',  'NO',  'RU',  'SV',  'ZH'],  13,  u'EN')])		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
ATTLIST  =  Bio.EUtils.POM.AttributeList([Bio.EUtils.POM.XMLAttribute('LNG',  ['DA',  'DE',  'EN',  'EL',  'ES',  'FR',  'IT',  'IW',  'JA',  'NL',  'NO',  'RU',  'SV',  'ZH'],  13,  u'EN')])


Clone # 420
Anti-unification distance between two trees = 2
Total size of two trees = 60
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Ace.py"
The first line is 194		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 71
while  1:
line  =  self._uhandle.readline()
if  not  line:
break
if  lines  and  line[:2]  ==  'CO':
self._uhandle.saveline(line)
break
lines.append(line)		 while  1:
line  =  self._uhandle.readline()
if  not  line:
break
if  lines  and  line[:14]  ==  'BEGIN_SEQUENCE':
self._uhandle.saveline(line)
break
lines.append(line)
if  not  lines:
return  None		 if  not  lines:
return  None
data  =  ''.join(lines) data  =  ''.join(lines)
if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))		 if  self._parser  is  not  None:
return  self._parser.parse(File.StringHandle(data))
return  data return  data


Clone # 421
Anti-unification distance between two trees = 4
Total size of two trees = 60
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 120		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/KeyWList.py"
The first line is 75
read_and_call(uhandle,  consumer.noevent,  start  =  'Time') read_and_call(uhandle,  consumer.noevent,  start='----')
read_and_call(uhandle,  consumer.noevent,  blank  =  1) read_and_call(uhandle,  consumer.noevent,  blank=1)
read_and_call(uhandle,  consumer.noevent,  start  =  '***') read_and_call(uhandle,  consumer.noevent,  start='List  of  keywords')
read_and_call_while(uhandle,  consumer.noevent,  blank  =  1) read_and_call(uhandle,  consumer.noevent,  blank=1)
read_and_call(uhandle,  consumer.noevent,  start  =  '***') read_and_call(uhandle,  consumer.noevent,  start='----')


Clone # 422
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 104		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 101
ambiguous_dna_by_id  =  {} ambiguous_dna_by_name  =  {}
for  key,  value  in  CodonTable.ambiguous_dna_by_id.items():
ambiguous_dna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.ambiguous_dna_by_name.items():
ambiguous_dna_by_name[key]  =  Translator(value)
ambiguous_rna_by_name  =  {} ambiguous_dna_by_id  =  {}
for  key,  value  in  CodonTable.ambiguous_rna_by_name.items():
ambiguous_rna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.ambiguous_dna_by_id.items():
ambiguous_dna_by_id[key]  =  Translator(value)
ambiguous_rna_by_id  =  {} ambiguous_rna_by_name  =  {}
for  key,  value  in  CodonTable.ambiguous_rna_by_id.items():
ambiguous_rna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.ambiguous_rna_by_name.items():
ambiguous_rna_by_name[key]  =  Translator(value)


Clone # 423
Anti-unification distance between two trees = 3
Total size of two trees = 60
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 104		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 86
ambiguous_dna_by_id  =  {} unambiguous_dna_by_name  =  {}
for  key,  value  in  CodonTable.ambiguous_dna_by_id.items():
ambiguous_dna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_dna_by_name.items():
unambiguous_dna_by_name[key]  =  Translator(value)
ambiguous_rna_by_name  =  {} unambiguous_dna_by_id  =  {}
for  key,  value  in  CodonTable.ambiguous_rna_by_name.items():
ambiguous_rna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_dna_by_id.items():
unambiguous_dna_by_id[key]  =  Translator(value)
ambiguous_rna_by_id  =  {} unambiguous_rna_by_name  =  {}
for  key,  value  in  CodonTable.ambiguous_rna_by_id.items():
ambiguous_rna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.unambiguous_rna_by_name.items():
unambiguous_rna_by_name[key]  =  Translator(value)


Clone # 424
Anti-unification distance between two trees = 1
Total size of two trees = 58
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Mindy/SimpleSeqRecord.py"
The first line is 87		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Fasta/__init__.py"
The first line is 315
items  =  self.index_function(seq_record) items  =  self.index_function(tmp_rec)
if  type(items)  is  not  type([])  and  type(items)  is  not  type(()):
items  =  [items]		 if  type(items)  is  not  type([])  and  type(items)  is  not  type(()):
items  =  [items]
if  len(items)  ==  1:
seq_id  =  items[0]
name  =  []
aliases  =  []
elif  len(items)  ==  3:
seq_id,  name,  aliases  =  items
raise  ValueError("Unexpected  items  from  index  function:  %s"  %
(items))		 if  len(items)  ==  1:
seq_id  =  items[0]
name  =  []
aliases  =  []
elif  len(items)  ==  3:
seq_id,  name,  aliases  =  items
raise  ValueError("Unexpected  items  from  index  function:  %s"  %
(items))
return  {"id"  :  [seq_id],
"name"  :  name,
"aliases"  :  aliases}		 return  {"id"  :  [seq_id],
"name"  :  name,
"aliases"  :  aliases}


Clone # 425
Anti-unification distance between two trees = 4
Total size of two trees = 57
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 111		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 90
assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists" assert  not  hasattr(klass,  "end_"  +tag+"_block"),  "existing  method  exists"
s  =  """if  1:
"""  %  locals()		 s  =  """if  1:
"""  %  locals()
d  =  {"Decode":  Decode} d  =  {"Decode":  Decode}
exec  s  in  d exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"]) setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"]) setattr(klass,  "end_"  +  tag,  d["end"])


Clone # 426
Anti-unification distance between two trees = 2
Total size of two trees = 56
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/utils.py"
The first line is 7		Source file "/home/peter/clone_digger/biopython-1.44/Bio/utils.py"
The first line is 15
def  translate(seq,  id  =  None):
if  id  is  None:
s  =  "translator"
s  =  "translator.id.%d"  %  id
translator  =  default_manager.resolve(seq.alphabet,  s)
return  translator.translate(seq)		 def  translate_to_stop(seq,  id  =  None):
if  id  is  None:
s  =  "translator"
s  =  "translator.id.%d"  %  id
translator  =  default_manager.resolve(seq.alphabet,  s)
return  translator.translate_to_stop(seq)
def  translate_to_stop(seq,  id  =  None):
if  id  is  None:
s  =  "translator"
s  =  "translator.id.%d"  %  id
translator  =  default_manager.resolve(seq.alphabet,  s)
return  translator.translate_to_stop(seq)		 def  back_translate(seq,  id  =  None):
if  id  is  None:
s  =  "translator"
s  =  "translator.id.%d"  %  id
translator  =  default_manager.resolve(seq.alphabet,  s)
return  translator.back_translate(seq)


Clone # 427
Anti-unification distance between two trees = 2
Total size of two trees = 56
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 381		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 389
def  num_Adeno2(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.num_Adeno2  =  int(  cols[  1  ]  )		 def  num_pBR322(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.num_pBR322  =  int(  cols[  1  ]  )
def  num_Lambda(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.num_Lambda  =  int(  cols[  1  ]  )		 def  num_PhiX174(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.num_PhiX174  =  int(  cols[  1  ]  )


Clone # 428
Anti-unification distance between two trees = 2
Total size of two trees = 56
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/PDB/parse_pdb_header.py"
The first line is 195		Source file "/home/peter/clone_digger/biopython-1.44/Bio/PDB/parse_pdb_header.py"
The first line is 180
tok=tt.split(":") tok=tt.split(":")
if  len(tok)>=2:
ckey=tok[0]
cval=re.sub("\A\s*","",tok[1])
if  ckey=='mol_id':
dict['source'][cval]={'misc':''}
comp_molid=cval
last_src_key="misc"
dict['source'][comp_molid][ckey]=cval
last_src_key=ckey
dict['source'][comp_molid][last_src_key]+=tok[0]+"  "		 if  len(tok)>=2:
ckey=tok[0]
cval=re.sub("\A\s*","",tok[1])
if  ckey=='mol_id':
dict['compound'][cval]={'misc':''}
comp_molid=cval
last_comp_key="misc"
dict['compound'][comp_molid][ckey]=cval
last_comp_key=ckey
dict['compound'][comp_molid][last_comp_key]+=tok[0]+"  "


Clone # 429
Anti-unification distance between two trees = 4
Total size of two trees = 56
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1087		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  consrtm(self,  content):
self._cur_reference.consrtm  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  title(self,  content):
self._cur_reference.title  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  journal(self,  content):
self._cur_reference.journal  =  content		 def  title(self,  content):
self._cur_reference.title  =  content
def  medline_id(self,  content):
self._cur_reference.medline_id  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content


Clone # 430
Anti-unification distance between two trees = 4
Total size of two trees = 56
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 558		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555
def  consrtm(self,  content):
self._current_ref.consrtm  =  content		 def  authors(self,  content):
self._current_ref.authors  =  content
def  title(self,  content):
self._current_ref.title  =  content		 def  consrtm(self,  content):
self._current_ref.consrtm  =  content
def  journal(self,  content):
self._current_ref.journal  =  content		 def  title(self,  content):
self._current_ref.title  =  content
def  medline_id(self,  content):
self._current_ref.medline_id  =  content		 def  journal(self,  content):
self._current_ref.journal  =  content


Clone # 431
Anti-unification distance between two trees = 4
Total size of two trees = 56
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1090		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  title(self,  content):
self._cur_reference.title  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  journal(self,  content):
self._cur_reference.journal  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  medline_id(self,  content):
self._cur_reference.medline_id  =  content		 def  title(self,  content):
self._cur_reference.title  =  content
def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content


Clone # 432
Anti-unification distance between two trees = 4
Total size of two trees = 56
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 561		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555
def  title(self,  content):
self._current_ref.title  =  content		 def  authors(self,  content):
self._current_ref.authors  =  content
def  journal(self,  content):
self._current_ref.journal  =  content		 def  consrtm(self,  content):
self._current_ref.consrtm  =  content
def  medline_id(self,  content):
self._current_ref.medline_id  =  content		 def  title(self,  content):
self._current_ref.title  =  content
def  pubmed_id(self,  content):
self._current_ref.pubmed_id  =  content		 def  journal(self,  content):
self._current_ref.journal  =  content


Clone # 433
Anti-unification distance between two trees = 4
Total size of two trees = 56
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1022		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019
def  size(self,  content):
self.data.size  =  content		 def  locus(self,  content):
self.data.locus  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  size(self,  content):
self.data.size  =  content
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  residue_type(self,  content):
self.data.residue_type  =  content
def  date(self,  content):
self.data.date  =  content		 def  data_file_division(self,  content):
self.data.data_file_division  =  content


Clone # 434
Anti-unification distance between two trees = 4
Total size of two trees = 56
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1093		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  journal(self,  content):
self._cur_reference.journal  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  medline_id(self,  content):
self._cur_reference.medline_id  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content		 def  title(self,  content):
self._cur_reference.title  =  content
def  remark(self,  content):
self._cur_reference.remark  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content


Clone # 435
Anti-unification distance between two trees = 4
Total size of two trees = 56
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1025
def  locus(self,  content):
self.data.locus  =  content		 def  residue_type(self,  content):
self.data.residue_type  =  content
def  size(self,  content):
self.data.size  =  content		 def  data_file_division(self,  content):
self.data.data_file_division  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  date(self,  content):
self.data.date  =  content
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  definition(self,  content):
self.data.definition  =  content


Clone # 436
Anti-unification distance between two trees = 1
Total size of two trees = 56
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/_Update/RestrictionCompiler.py"
The first line is 534		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/_Update/RestrictionCompiler.py"
The first line is 485
try  :
import  Bio.Restriction.Restriction_Dictionary  as  rd
except  ImportError  :
print  '\
\n  Aborting  installation.'
sys.exit()		 try  :
import  Bio.Restriction.Restriction_Dictionary  as  rd
except  ImportError  :
print  '\
\n  Aborting  installation.'
sys.exit()
old  =  os.path.join(os.path.split(rd.__file__)[0],
'Restriction_Dictionary.py')		 old  =  os.path.join(os.path.split(rd.__file__)[0],
'Restriction_Dictionary.py')
update  =  os.getcwd() update_folder  =  os.getcwd()
shutil.copyfile(old,  os.path.join(update,  'Restriction_Dictionary.old')) shutil.copyfile(old,  os.path.join(update_folder,
'Restriction_Dictionary.old'))


Clone # 437
Anti-unification distance between two trees = 0
Total size of two trees = 56
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/Distribution.py"
The first line is 68		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/BasicChromosome.py"
The first line is 145
self._draw_legend(cur_drawing,  2.5  *  inch,  width) self._draw_legend(cur_drawing,  2.5  *  inch,  width)
if  self.output_format  ==  'pdf':
out_canvas  =  canvas.Canvas(output_file,  pagesize  =  self.page_size)
renderPDF.draw(cur_drawing,  out_canvas,  0,  0)
out_canvas.showPage()
out_canvas.save()
elif  self.output_format  ==  'eps':
renderPS.drawToFile(cur_drawing,  output_file)
raise  ValueError("Invalid  output  format  %s"  %  self.output_format)		 if  self.output_format  ==  'pdf':
out_canvas  =  canvas.Canvas(output_file,  pagesize  =  self.page_size)
renderPDF.draw(cur_drawing,  out_canvas,  0,  0)
out_canvas.showPage()
out_canvas.save()
elif  self.output_format  ==  'eps':
renderPS.drawToFile(cur_drawing,  output_file)
raise  ValueError("Invalid  output  format  %s"  %  self.output_format)


Clone # 438
Anti-unification distance between two trees = 3
Total size of two trees = 55
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MarkovModel.py"
The first line is 84		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MarkovModel.py"
The first line is 77
mm.p_emission  =  zeros((N,  M),  MATCODE) mm.p_transition  =  zeros((N,  N),  MATCODE)
line  =  _readline_and_check_start(handle,  "EMISSION:") line  =  _readline_and_check_start(handle,  "TRANSITION:")
for  i  in  range(len(states)):
line  =  _readline_and_check_start(handle,  "    %s:"  %  states[i])
mm.p_emission[i,:]  =  map(float,  line.split()[1:])		 for  i  in  range(len(states)):
line  =  _readline_and_check_start(handle,  "    %s:"  %  states[i])
mm.p_transition[i,:]  =  map(float,  line.split()[1:])


Clone # 439
Anti-unification distance between two trees = 0
Total size of two trees = 54
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MarkovModel.py"
The first line is 354		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MarkovModel.py"
The first line is 137
pseudo_initial,  pseudo_emission,  pseudo_transition  =  map(
_safe_asarray,  (pseudo_initial,  pseudo_emission,  pseudo_transition))		 pseudo_initial,  pseudo_emission,  pseudo_transition  =  map(
_safe_asarray,  (pseudo_initial,  pseudo_emission,  pseudo_transition))
if  pseudo_initial  and  shape(pseudo_initial)  !=  (N,):
raise  ValueError,  "pseudo_initial  not  shape  len(states)"		 if  pseudo_initial  and  shape(pseudo_initial)  !=  (N,):
raise  ValueError,  "pseudo_initial  not  shape  len(states)"
if  pseudo_transition  and  shape(pseudo_transition)  !=  (N,N):
raise  ValueError,  "pseudo_transition  not  shape  "  +  \
"len(states)  X  len(states)"		 if  pseudo_transition  and  shape(pseudo_transition)  !=  (N,N):
raise  ValueError,  "pseudo_transition  not  shape  "  +  \
"len(states)  X  len(states)"
if  pseudo_emission  and  shape(pseudo_emission)  !=  (N,M):
raise  ValueError,  "pseudo_emission  not  shape  "  +  \
"len(states)  X  len(alphabet)"		 if  pseudo_emission  and  shape(pseudo_emission)  !=  (N,M):
raise  ValueError,  "pseudo_emission  not  shape  "  +  \
"len(states)  X  len(alphabet)"


Clone # 440
Anti-unification distance between two trees = 2
Total size of two trees = 54
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/PDB/Polypeptide.py"
The first line is 406		Source file "/home/peter/clone_digger/biopython-1.44/Bio/PDB/Polypeptide.py"
The first line is 392
ppb=CaPPBuilder() ppb=PPBuilder()
print  "CA-CA" print  "C-N"
for  pp  in  ppb.build_peptides(s):
print  pp.get_sequence()		 for  pp  in  ppb.build_peptides(s):
print  pp.get_sequence()
for  pp  in  ppb.build_peptides(s[0]):
print  pp.get_sequence()		 for  pp  in  ppb.build_peptides(s[0]):
print  pp.get_sequence()
for  pp  in  ppb.build_peptides(s[0]["A"]):
print  pp.get_sequence()		 for  pp  in  ppb.build_peptides(s[0]["A"]):
print  pp.get_sequence()


Clone # 441
Anti-unification distance between two trees = 3
Total size of two trees = 54
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/LocationParser.py"
The first line is 146		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Decode.py"
The first line is 182
def  t_colon(self,  input):
self.rv.append(Token("colon"))		 def  t_pipe(self,  input):
self.rv.append(Token("pipe"))
def  t_open_paren(self,  input):
self.rv.append(Token("open_paren"))		 def  t_open_paren(self,  input):
self.rv.append(Token("open_paren"))
def  t_close_paren(self,  input):
self.rv.append(Token("close_paren"))		 def  t_close_paren(self,  input):
self.rv.append(Token("close_paren"))


Clone # 442
Anti-unification distance between two trees = 3
Total size of two trees = 54
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqIO/PhylipIO.py"
The first line is 277		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqIO/PhylipIO.py"
The first line is 337
handle  =  StringIO(phylip_text3) handle  =  StringIO(phylip_text5a)
list3  =  list(PhylipIterator(handle)) list5  =  list(PhylipIterator(handle))
handle.close() handle.close()
assert  len(list3)==5 assert  len(list5)==5
for  i  in  range(0,5)  :
list2[i].id  ==  list3[i].id
list2[i].seq.tostring()  ==  list3[i].seq.tostring()		 for  i  in  range(0,5)  :
list4[i].id  ==  list5[i].id
list4[i].seq.tostring()  ==  list5[i].seq.tostring()


Clone # 443
Anti-unification distance between two trees = 0
Total size of two trees = 54
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/Prodoc.py"
The first line is 426		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 799
class  parser(sgmllib.SGMLParser):
def  __init__(self):
sgmllib.SGMLParser.__init__(self)
self._in_pre  =  0
self.data  =  []
def  handle_data(self,  data):
if  self._in_pre:
self.data.append(data)
def  do_br(self,  attrs):
if  self._in_pre:
self.data.append('\n')
def  start_pre(self,  attrs):
self._in_pre  =  1
def  end_pre(self):
self._in_pre  =  0		 class  parser(sgmllib.SGMLParser):
def  __init__(self):
sgmllib.SGMLParser.__init__(self)
self._in_pre  =  0
self.data  =  []
def  handle_data(self,  data):
if  self._in_pre:
self.data.append(data)
def  do_br(self,  attrs):
if  self._in_pre:
self.data.append('\n')
def  start_pre(self,  attrs):
self._in_pre  =  1
def  end_pre(self):
self._in_pre  =  0
p  =  parser() p  =  parser()
p.feed(handle.read()) p.feed(handle.read())


Clone # 444
Anti-unification distance between two trees = 0
Total size of two trees = 54
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Pathway/Rep/MultiGraph.py"
The first line is 79		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Pathway/Rep/Graph.py"
The first line is 84
def  edges(self,  label):
if  not  self.__label_map.has_key(label):
raise  ValueError,  "Unknown  label:  "  +  str(label)
return  self.__label_map[label].list()		 def  edges(self,  label):
if  not  self.__label_map.has_key(label):
raise  ValueError,  "Unknown  label:  "  +  str(label)
return  self.__label_map[label].list()
def  labels(self):
return  self.__label_map.keys()		 def  labels(self):
return  self.__label_map.keys()
def  nodes(self):
return  self.__adjacency_list.keys()		 def  nodes(self):
return  self.__adjacency_list.keys()


Clone # 445
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/__init__.py"
The first line is 52		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 54
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 446
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/__init__.py"
The first line is 52		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 55
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 447
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/__init__.py"
The first line is 72		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 54
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 448
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/__init__.py"
The first line is 72		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 55
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 449
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/__init__.py"
The first line is 78		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 54
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 450
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/__init__.py"
The first line is 78		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 55
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 451
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 54		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 55
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 452
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 54		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/__init__.py"
The first line is 46
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 453
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 54		Source file "/home/peter/clone_digger/biopython-1.44/Bio/IntelliGenetics/__init__.py"
The first line is 45
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 454
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 55		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/__init__.py"
The first line is 46
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 455
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 55		Source file "/home/peter/clone_digger/biopython-1.44/Bio/IntelliGenetics/__init__.py"
The first line is 45
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 456
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/__init__.py"
The first line is 52		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/__init__.py"
The first line is 78
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 457
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/__init__.py"
The first line is 52		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/__init__.py"
The first line is 46
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 458
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/__init__.py"
The first line is 72		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/__init__.py"
The first line is 78
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 459
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/__init__.py"
The first line is 72		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/__init__.py"
The first line is 46
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 460
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/__init__.py"
The first line is 78		Source file "/home/peter/clone_digger/biopython-1.44/Bio/IntelliGenetics/__init__.py"
The first line is 45
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 461
Anti-unification distance between two trees = 1
Total size of two trees = 54
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/__init__.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/IntelliGenetics/__init__.py"
The first line is 45
def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data		 def  next(self):
data  =  self._reader.next()
if  self._parser  is  not  None:
if  data:
dumpfile  =  open(  'dump',  'w'  )
dumpfile.write(  data  )
dumpfile.close()
return  self._parser.parse(File.StringHandle(data))
return  data
def  __iter__(self):
return  iter(self.next,  None)		 def  __iter__(self):
return  iter(self.next,  None)


Clone # 462
Anti-unification distance between two trees = 3
Total size of two trees = 53
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 1093		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 1075
def  taxonomy_id(self,  line):
line  =  line[5:].rstrip(_CHOMP)
index  =  line.find('=')
if  index  >=  0:
descr  =  line[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  line[index+1:].split(',')
ids  =  line.split(',')
try  :
self.data.annotations['taxonomy'].extend(ids)
except  KeyError:
self.data.annotations['taxonomy']  =  ids		 def  organism_host(self,  line):
data  =  line[5:].rstrip(_CHOMP)
index  =  data.find('=')
if  index  >=  0:
descr  =  data[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  data[index+1:].split(',')
ids  =  data.split(',')
try  :
self.data.annotations['organism_host'].extend(ids)
except  KeyError:
self.data.annotations['organism_host']  =  ids


Clone # 463
Anti-unification distance between two trees = 2
Total size of two trees = 53
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 729		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 707
def  organism_host(self,  line):
line  =  line[5:].rstrip(_CHOMP)
index  =  line.find('=')
if  index  >=  0:
descr  =  line[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  line[index+1:].split(',')
ids  =  line.split(',')
self.data.host_organism.extend([id.strip()  for  id  in  ids])		 def  taxonomy_id(self,  line):
line  =  line[5:].rstrip(_CHOMP)
index  =  line.find('=')
if  index  >=  0:
descr  =  line[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  line[index+1:].split(',')
ids  =  line.split(',')
self.data.taxonomy_id.extend([id.strip()  for  id  in  ids])


Clone # 464
Anti-unification distance between two trees = 2
Total size of two trees = 52
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 354		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 358
def  prototype(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.prototype  =  cols[  1  ]		 def  source(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.source  =  cols[  1  ]
def  source(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.source  =  cols[  1  ]		 def  microorganism(  self,  line  ):
cols  =  string.split(  line,  ':  '  )
self.data.microorganism  =  cols[  1  ]


Clone # 465
Anti-unification distance between two trees = 1
Total size of two trees = 52
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 233		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 178
def  feed(self,  handle,  consumer):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
uhandle  =  File.SGMLHandle(  uhandle  )
if  uhandle.peekline():
self._scan_record(uhandle,  consumer)		 def  feed(self,  handle,  consumer):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
uhandle  =  File.SGMLHandle(  uhandle  )
if  uhandle.peekline():
self._scan_record(uhandle,  consumer)
def  _scan_line(self,  uhandle  ):
line  =  safe_readline(  uhandle  )
line  =  string.join(  string.split(  line  ),  '  '  )  +  '  '
return  line		 def  _scan_line(self,  uhandle  ):
line  =  safe_readline(  uhandle  )
line  =  string.join(  string.split(  line  ),  '  '  )  +  '  '
return  line


Clone # 466
Anti-unification distance between two trees = 4
Total size of two trees = 52
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/expressions/swissprot/ipi.py"
The first line is 43		Source file "/home/peter/clone_digger/biopython-1.44/Bio/expressions/swissprot/ipi.py"
The first line is 37
DT_seq_update_exp  =  (Martel.Str("DT      ")  +
Time.make_expression("%(DD)-%(Jan)-%(YYYY)")  +  \
Martel.Str("  (IPI  Human  rel.  ")  +  \
Martel.Float("release")  +  \
Martel.Str(",  Last  sequence  update)")  +  Martel.AnyEol())		 DT_created_exp  =  (Martel.Str("DT      ")  +
Time.make_expression("%(DD)-%(Jan)-%(YYYY)")  +  \
Martel.Str("  (IPI  Human  rel.  ")  +  \
Martel.Float("release")  +  \
Martel.Str(",  Created)")  +  Martel.AnyEol())
DT_ann_update_exp  =  (Martel.Str("DT      ")  +
Time.make_expression("%(DD)-%(Jan)-%(YYYY)")  +  \
Martel.Str("  (IPI  Human  rel.  ")  +  \
Martel.Float("release")  +  \
Martel.Str(",  Last  annotation  update)")  +  Martel.AnyEol())		 DT_seq_update_exp  =  (Martel.Str("DT      ")  +
Time.make_expression("%(DD)-%(Jan)-%(YYYY)")  +  \
Martel.Str("  (IPI  Human  rel.  ")  +  \
Martel.Float("release")  +  \
Martel.Str(",  Last  sequence  update)")  +  Martel.AnyEol())


Clone # 467
Anti-unification distance between two trees = 4
Total size of two trees = 52
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/lcc.py"
The first line is 140		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/lcc.py"
The first line is 146
if  'A'  not  in  seq:
term_a=0
term_a=((upper.count('A'))/float(wsize))*((math.log((upper.count('A'))
/float(wsize)))/l2)		 if  'C'  not  in  seq:
term_c=0
term_c=((upper.count('C'))/float(wsize))*((math.log((upper.count('C'))
/float(wsize)))/l2)
if  'C'  not  in  seq:
term_c=0
term_c=((upper.count('C'))/float(wsize))*((math.log((upper.count('C'))
/float(wsize)))/l2)		 if  'T'  not  in  seq:
term_t=0
term_t=((upper.count('T'))/float(wsize))*((math.log((upper.count('T'))
/float(wsize)))/l2)


Clone # 468
Anti-unification distance between two trees = 4
Total size of two trees = 52
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/lcc.py"
The first line is 140		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/lcc.py"
The first line is 151
if  'A'  not  in  seq:
term_a=0
term_a=((upper.count('A'))/float(wsize))*((math.log((upper.count('A'))
/float(wsize)))/l2)		 if  'T'  not  in  seq:
term_t=0
term_t=((upper.count('T'))/float(wsize))*((math.log((upper.count('T'))
/float(wsize)))/l2)
if  'C'  not  in  seq:
term_c=0
term_c=((upper.count('C'))/float(wsize))*((math.log((upper.count('C'))
/float(wsize)))/l2)		 if  'G'  not  in  seq:
term_g=0
term_g=((upper.count('G'))/float(wsize))*((math.log((upper.count('G'))
/float(wsize)))/l2)


Clone # 469
Anti-unification distance between two trees = 2
Total size of two trees = 52
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 27
if  order1<=order2:
increase  =  count1
increase  =  count2		 if  order1  <  order2:
increase  =  count1
increase  =  count2
for  j  in  range(nElements):
clusterid  =  clusterids[j]
if  clusterid==i1  and  order1>order2:  neworder[j]  +=  increase
if  clusterid==i2  and  order1<=order2:  neworder[j]  +=  increase
if  clusterid==i1  or  clusterid==i2:  clusterids[j]  =  -i-1		 for  j  in  range(nElements):
clusterid  =  clusterids[j]
if  clusterid==i1  and  order1>=order2:  neworder[j]  +=  increase
if  clusterid==i2  and  order1<order2:  neworder[j]  +=  increase
if  clusterid==i1  or  clusterid==i2:  clusterids[j]  =  -i-1


Clone # 470
Anti-unification distance between two trees = 4
Total size of two trees = 52
Total length of sequences = 20
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 23		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/nbrf_format.py"
The first line is 15
import  string import  string
import  Martel import  Martel
from  Martel  import  RecordReader from  Martel  import  RecordReader
from  Martel  import  Str from  Martel  import  Str
from  Martel  import  AnyEol from  Martel  import  AnyEol,  UntilEol
from  Martel  import  ToEol from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  Group
from  Martel  import  Alt from  Martel  import  Alt,  Opt
from  Martel  import  Opt from  Martel  import  Rep
from  Martel  import  Rep from  Martel  import  Rep1


Clone # 471
Anti-unification distance between two trees = 4
Total size of two trees = 52
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 270		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 334
next_item  =  self._scan_field(  text,  'Shape  of &nbsp;molecule:',  'Sequence  length:'  ) next_item  =  self._scan_field(  text,  'Partial  protein:',  'Conflict:'  )
data.shape  =  consumer.text_field(  next_item  ) data.is_partial_protein  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Plasmid:',  'Complete  genome:'  ) next_item  =  self._scan_field(  text,  'Plasmid:',  'Sequence  length:'  )
data.is_plasmid  =  consumer.text_field(  next_item  ) data.is_plasmid  =  consumer.text_field(  next_item  )


Clone # 472
Anti-unification distance between two trees = 1
Total size of two trees = 51
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 1078		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 732
data  =  line[5:].rstrip(_CHOMP) line  =  line[5:].rstrip(_CHOMP)
index  =  data.find('=') index  =  line.find('=')
if  index  >=  0:
descr  =  data[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  data[index+1:].split(',')
ids  =  data.split(',')		 if  index  >=  0:
descr  =  line[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  line[index+1:].split(',')
ids  =  line.split(',')


Clone # 473
Anti-unification distance between two trees = 1
Total size of two trees = 51
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 1078		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 719
data  =  line[5:].rstrip(_CHOMP) line  =  line[5:].rstrip(_CHOMP)
index  =  data.find('=') index  =  line.find('=')
if  index  >=  0:
descr  =  data[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  data[index+1:].split(',')
ids  =  data.split(',')		 if  index  >=  0:
descr  =  line[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  line[index+1:].split(',')
ids  =  line.split(',')


Clone # 474
Anti-unification distance between two trees = 3
Total size of two trees = 50
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 188		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 179
def  call_method(self,  line):
self.data.comments['call_method']  =  line[12:-1].strip()		 def  chromat_file(self,  line):
self.data.comments['chromat_file']  =  line[13:-1].strip()
def  quality_levels(self,  line):
self.data.comments['quality_levels']  =  int(line[15:-1].strip())		 def  abi_thumbprint(self,  line):
self.data.comments['abi_thumbprint']  =  int(line[15:-1].strip())


Clone # 475
Anti-unification distance between two trees = 4
Total size of two trees = 50
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 194		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 188
def  time(self,  line):
self.data.comments['time']  =  line[5:-1].strip()		 def  call_method(self,  line):
self.data.comments['call_method']  =  line[12:-1].strip()
def  trace_array_min_index(self,  line):
self.data.comments['trace_array_min_index']  =  int(line[22:-1].strip())		 def  quality_levels(self,  line):
self.data.comments['quality_levels']  =  int(line[15:-1].strip())


Clone # 476
Anti-unification distance between two trees = 4
Total size of two trees = 50
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 194		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 179
def  time(self,  line):
self.data.comments['time']  =  line[5:-1].strip()		 def  chromat_file(self,  line):
self.data.comments['chromat_file']  =  line[13:-1].strip()
def  trace_array_min_index(self,  line):
self.data.comments['trace_array_min_index']  =  int(line[22:-1].strip())		 def  abi_thumbprint(self,  line):
self.data.comments['abi_thumbprint']  =  int(line[15:-1].strip())


Clone # 477
Anti-unification distance between two trees = 4
Total size of two trees = 50
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 191		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 207
def  quality_levels(self,  line):
self.data.comments['quality_levels']  =  int(line[15:-1].strip())		 def  trace_peak_area_ratio(self,  line):
self.data.comments['trace_peak_area_ratio']  =  float(line[22:-1].strip())
def  time(self,  line):
self.data.comments['time']  =  line[5:-1].strip()		 def  chem(self,  line):
self.data.comments['chem']  =  line[5:-1].strip()


Clone # 478
Anti-unification distance between two trees = 0
Total size of two trees = 50
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 1097		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 732
line  =  line[5:].rstrip(_CHOMP) line  =  line[5:].rstrip(_CHOMP)
index  =  line.find('=') index  =  line.find('=')
if  index  >=  0:
descr  =  line[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  line[index+1:].split(',')
ids  =  line.split(',')		 if  index  >=  0:
descr  =  line[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  line[index+1:].split(',')
ids  =  line.split(',')


Clone # 479
Anti-unification distance between two trees = 0
Total size of two trees = 50
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 1097		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 719
line  =  line[5:].rstrip(_CHOMP) line  =  line[5:].rstrip(_CHOMP)
index  =  line.find('=') index  =  line.find('=')
if  index  >=  0:
descr  =  line[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  line[index+1:].split(',')
ids  =  line.split(',')		 if  index  >=  0:
descr  =  line[:index]
assert  descr  ==  "NCBI_TaxID",  "Unexpected  taxonomy  type  %s"  %  descr
ids  =  line[index+1:].split(',')
ids  =  line.split(',')


Clone # 480
Anti-unification distance between two trees = 4
Total size of two trees = 50
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 602		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 531
def  cut_once(self)  :
return  True		 def  cut_once(self)  :
return  False
cut_once  =  classmethod(cut_once) cut_once  =  classmethod(cut_once)
def  cut_twice(self)  :
return  False		 def  cut_twice(self)  :
return  False
cut_twice  =  classmethod(cut_twice) cut_twice  =  classmethod(cut_twice)
def  _modify(self,  location)  :
yield  location  +  self.fst5		 def  _modify(self,  location)  :
yield  location
_modify  =  classmethod(_modify) _modify  =  classmethod(_modify)


Clone # 481
Anti-unification distance between two trees = 4
Total size of two trees = 50
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/config/DBRegistry.py"
The first line is 77		Source file "/home/peter/clone_digger/biopython-1.44/Bio/config/DBRegistry.py"
The first line is 160
def  get(self,  key,  default=None):
try:
results  =  self[key]
except  KeyError:
results  =  default
return  results		 def  get(self,  key,  default=None):
try:
data  =  self[key]
except  KeyError:
data  =  default
return  data
def  get_as(self,  key,  to_io=None,  default=None):
data  =  self.get(key,  default=default)
return  self._convert_to(data,  to_io)		 def  get_as(self,  key,  to_io=None,  default=None):
data  =  self.get(key,  default=default)
return  self._last_object_used._convert_to(data,  to_io)


Clone # 482
Anti-unification distance between two trees = 2
Total size of two trees = 48
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DBIdsClient.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/HistoryClient.py"
The first line is 194
def  _get_dbids(self):
infile  =  self.efetch(retmode  =  "text",  rettype  =  "uilist")
ids  =  parse.parse_fetch_identifiers(infile)
return  Datatypes.DBIds(self.records_dbids.db,  ids)		 def  _get_dbids(self):
infile  =  self.efetch(retmode  =  "text",  rettype  =  "uilist")
ids  =  parse.parse_fetch_identifiers(infile)
return  Datatypes.DBIds(self.cookie.db,  ids)
dbids  =  property(_get_dbids,  None,  None,
"The  DBIds  for  this  results  set,  validated  from  the  server's  'uilist'")		 dbids  =  property(_get_dbids,  None,  None,
"The  DBIds  for  this  results  set,  fetched  from  the  server's  'uilist'")


Clone # 483
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/lcc.py"
The first line is 125		Source file "/home/peter/clone_digger/biopython-1.44/Bio/lcc.py"
The first line is 120
if  count(window,'C')==0:
term_c=0
term_c=((count(window,'C'))/float(wsize))*((math.log((count(window,'C'))/float(wsize)))/l2)		 if  count(window,'A')==0:
term_a=0
term_a=((count(window,'A'))/float(wsize))*((math.log((count(window,'A'))/float(wsize)))/l2)
if  count(window,'T')==0:
term_t=0
term_t=((count(window,'T'))/float(wsize))*((math.log((count(window,'T'))/float(wsize)))/l2)		 if  count(window,'C')==0:
term_c=0
term_c=((count(window,'C'))/float(wsize))*((math.log((count(window,'C'))/float(wsize)))/l2)


Clone # 484
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/lcc.py"
The first line is 129		Source file "/home/peter/clone_digger/biopython-1.44/Bio/lcc.py"
The first line is 120
if  count(window,'T')==0:
term_t=0
term_t=((count(window,'T'))/float(wsize))*((math.log((count(window,'T'))/float(wsize)))/l2)		 if  count(window,'A')==0:
term_a=0
term_a=((count(window,'A'))/float(wsize))*((math.log((count(window,'A'))/float(wsize)))/l2)
if  count(window,'G')==0:
term_g=0
term_g=((count(window,'G'))/float(wsize))*((math.log((count(window,'G'))/float(wsize)))/l2)		 if  count(window,'C')==0:
term_c=0
term_c=((count(window,'C'))/float(wsize))*((math.log((count(window,'C'))/float(wsize)))/l2)


Clone # 485
Anti-unification distance between two trees = 0
Total size of two trees = 48
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 320		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 256
ATTLIST  =  Bio.EUtils.POM.AttributeList([Bio.EUtils.POM.XMLAttribute('LNG',  ['DA',  'DE',  'EN',  'EL',  'ES',  'FR',  'IT',  'IW',  'JA',  'NL',  'NO',  'RU',  'SV',  'ZH'],  13,  u'EN')]) ATTLIST  =  Bio.EUtils.POM.AttributeList([Bio.EUtils.POM.XMLAttribute('LNG',  ['DA',  'DE',  'EN',  'EL',  'ES',  'FR',  'IT',  'IW',  'JA',  'NL',  'NO',  'RU',  'SV',  'ZH'],  13,  u'EN')])


Clone # 486
Anti-unification distance between two trees = 0
Total size of two trees = 48
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 320		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 251
ATTLIST  =  Bio.EUtils.POM.AttributeList([Bio.EUtils.POM.XMLAttribute('LNG',  ['DA',  'DE',  'EN',  'EL',  'ES',  'FR',  'IT',  'IW',  'JA',  'NL',  'NO',  'RU',  'SV',  'ZH'],  13,  u'EN')]) ATTLIST  =  Bio.EUtils.POM.AttributeList([Bio.EUtils.POM.XMLAttribute('LNG',  ['DA',  'DE',  'EN',  'EL',  'ES',  'FR',  'IT',  'IW',  'JA',  'NL',  'NO',  'RU',  'SV',  'ZH'],  13,  u'EN')])


Clone # 487
Anti-unification distance between two trees = 3
Total size of two trees = 48
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 54		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 44
set_prop[Alphabet.RNAAlphabet]["transcriber"]  =  \
Transcribe.generic_transcriber		 set_prop[Alphabet.DNAAlphabet]["transcriber"]  =  \
Transcribe.generic_transcriber
set_prop[IUPAC.IUPACAmbiguousRNA]["transcriber"]  =  \
Transcribe.ambiguous_transcriber		 set_prop[IUPAC.IUPACAmbiguousDNA]["transcriber"]  =  \
Transcribe.ambiguous_transcriber
set_prop[IUPAC.IUPACUnambiguousRNA]["transcriber"]  =  \
Transcribe.unambiguous_transcriber		 set_prop[IUPAC.IUPACUnambiguousDNA]["transcriber"]  =  \
Transcribe.unambiguous_transcriber


Clone # 488
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 14
set_prop[IUPAC.IUPACUnambiguousDNA]["weight_range_table"]  =  \
IUPACData.unambiguous_dna_weight_ranges		 set_prop[IUPAC.IUPACUnambiguousDNA]["weight_table"]  =  \
IUPACData.unambiguous_dna_weights
set_prop[IUPAC.IUPACAmbiguousDNA]["weight_range_table"]  =  \
IUPACData.ambiguous_dna_weight_ranges		 set_prop[IUPAC.IUPACAmbiguousDNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_dna_weights
set_prop[IUPAC.IUPACUnambiguousRNA]["weight_range_table"]  =  \
IUPACData.unambiguous_rna_weight_ranges		 set_prop[IUPAC.IUPACUnambiguousRNA]["weight_table"]  =  \
IUPACData.unambiguous_rna_weights


Clone # 489
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 33		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 20
set_prop[IUPAC.IUPACAmbiguousRNA]["weight_range_table"]  =  \
IUPACData.ambiguous_rna_weight_ranges		 set_prop[IUPAC.IUPACAmbiguousRNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_rna_weights
set_prop[IUPAC.IUPACProtein]["weight_range_table"]  =  \
IUPACData.protein_weight_ranges		 set_prop[IUPAC.IUPACProtein]["weight_table"]  =  \
IUPACData.protein_weights
set_prop[IUPAC.ExtendedIUPACProtein]["weight_range_table"]  =  \
IUPACData.extended_protein_weight_ranges		 set_prop[IUPAC.ExtendedIUPACProtein]["weight_table"]  =  \
IUPACData.avg_extended_protein_weights


Clone # 490
Anti-unification distance between two trees = 3
Total size of two trees = 48
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Mindy/SimpleSeqRecord.py"
The first line is 145		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Mindy/SimpleSeqRecord.py"
The first line is 135
def  create_flatdb(files,  db_name,  indexer  =  SimpleIndexer()):
from  Bio.Mindy  import  FlatDB
unique_name  =  indexer.primary_key_name()
alias_names  =  indexer.secondary_key_names()
creator  =  FlatDB.create(db_name,  unique_name,  alias_names)
builder  =  indexer.get_builder()
for  filename  in  files:
creator.load(filename,  builder  =  builder,  fileid_info  =  {})
creator.close()		 def  create_berkeleydb(files,  db_name,  indexer  =  SimpleIndexer()):
from  Bio.Mindy  import  BerkeleyDB
unique_name  =  indexer.primary_key_name()
alias_names  =  indexer.secondary_key_names()
creator  =  BerkeleyDB.create(db_name,  unique_name,  alias_names)
builder  =  indexer.get_builder()
for  filename  in  files:
creator.load(filename,  builder  =  builder,  fileid_info  =  {})
creator.close()


Clone # 491
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 91
read_and_call(uhandle,  consumer._version,  contains  =  'MAST  version') read_and_call(uhandle,  consumer._version,  start  =  'MEME  version')
read_and_call_until(uhandle,  consumer.noevent,  start  =  'DATABASE  AND  MOTIFS') read_and_call_until(uhandle,  consumer.noevent,  start  =  'TRAINING  SET')
read_and_call(uhandle,  consumer.noevent,  start  =  'DATABASE') read_and_call(uhandle,  consumer.noevent,  start  =  'TRAINING  SET')
read_and_call(uhandle,  consumer.noevent,  start  =  '****') read_and_call(uhandle,  consumer.noevent,  start  =  '****')


Clone # 492
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 210		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 185
def  chem(self,  line):
self.data.comments['chem']  =  line[5:-1].strip()		 def  phred_version(self,  line):
self.data.comments['phred_version']  =  line[14:-1].strip()
def  dye(self,  line):
self.data.comments['dye']  =  line[4:-1].strip()		 def  call_method(self,  line):
self.data.comments['call_method']  =  line[12:-1].strip()


Clone # 493
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 72		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 74
composite_key  =  'system'  +  str(  system  )  +  'class0' composite_key  =  'system'  +  str(  system  )  +  'path0'
output  =  output  +  '\nsystem  %s'  %  self.cell_dict[  composite_key  ] output  =  output  +  '(%s:'  %  self.cell_dict[  composite_key  ]
composite_key  =  'system'  +  str(  system  )  +  'path0' composite_key  =  'system'  +  str(  system  )  +  'id0'
output  =  output  +  '(%s:'  %  self.cell_dict[  composite_key  ] output  =  output  +  '%s,'  %  self.cell_dict[  composite_key  ]


Clone # 494
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 304		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 301
data.contains_intron  =  consumer.word_field(  next_item  ) data.chloroplast_origin  =  consumer.word_field(  next_item  )
next_item  =  self._scan_field(  text,  'Included  in  intron:'  ) next_item  =  self._scan_field(  text,  'Contains  intron(s):'  )
data.included_in_intron  =  consumer.word_field(  next_item  ) data.contains_intron  =  consumer.word_field(  next_item  )
next_item  =  self._scan_field(  text,  'ORF:'  ) next_item  =  self._scan_field(  text,  'Included  in  intron:'  )


Clone # 495
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 30		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 32
from  Martel  import  ToEol from  Martel  import  AnyEol
from  Martel  import  Group from  Martel  import  ToEol
from  Martel  import  Alt from  Martel  import  Group
from  Martel  import  Opt from  Martel  import  Alt
from  Martel  import  Rep from  Martel  import  Rep
from  Martel  import  Rep1 from  Martel  import  Rep1
from  Martel  import  Any from  Martel  import  Any
from  Martel  import  AnyBut from  Martel  import  AnyBut


Clone # 496
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 30		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/nbrf_format.py"
The first line is 21
from  Martel  import  ToEol from  Martel  import  AnyEol,  UntilEol
from  Martel  import  Group from  Martel  import  ToEol
from  Martel  import  Alt from  Martel  import  Group
from  Martel  import  Opt from  Martel  import  Alt,  Opt
from  Martel  import  Rep from  Martel  import  Rep
from  Martel  import  Rep1 from  Martel  import  Rep1
from  Martel  import  Any from  Martel  import  Any
from  Martel  import  AnyBut from  Martel  import  AnyBut


Clone # 497
Anti-unification distance between two trees = 4
Total size of two trees = 48
Total length of sequences = 16
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 30		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/ecell_format.py"
The first line is 29
from  Martel  import  ToEol from  Martel  import  AnyEol
from  Martel  import  Group from  Martel  import  ToEol
from  Martel  import  Alt from  Martel  import  Group
from  Martel  import  Opt from  Martel  import  Alt
from  Martel  import  Rep from  Martel  import  Rep
from  Martel  import  Rep1 from  Martel  import  Rep1
from  Martel  import  Any from  Martel  import  Any
from  Martel  import  AnyBut from  Martel  import  AnyBut


Clone # 498
Anti-unification distance between two trees = 0
Total size of two trees = 48
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/NeuralNetwork/BackPropagation/Layer.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NeuralNetwork/BackPropagation/Layer.py"
The first line is 219
next_errors  =  self._next_layer.backpropagate(outputs,  learning_rate,
momentum)		 next_errors  =  self._next_layer.backpropagate(outputs,  learning_rate,
momentum)
for  this_node  in  self.nodes:
for  next_node  in  self._next_layer.nodes:
error_deriv  =  (next_errors[next_node]  *
self.values[this_node])
delta  =  (learning_rate  *  error_deriv  +
momentum  *  self.weight_changes[(this_node,  next_node)])
self.weights[(this_node,  next_node)]  +=  delta
self.weight_changes[(this_node,  next_node)]  =  delta		 for  this_node  in  self.nodes:
for  next_node  in  self._next_layer.nodes:
error_deriv  =  (next_errors[next_node]  *
self.values[this_node])
delta  =  (learning_rate  *  error_deriv  +
momentum  *  self.weight_changes[(this_node,  next_node)])
self.weights[(this_node,  next_node)]  +=  delta
self.weight_changes[(this_node,  next_node)]  =  delta


Clone # 499
Anti-unification distance between two trees = 4
Total size of two trees = 47
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 91
s  =  """if  1:
"""  %  (tag,  tag,  tag,  attrname)		 s  =  """if  1:
"""  %  locals()
d  =  {"Decode":  Decode} d  =  {"Decode":  Decode}
exec  s  in  d exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"]) setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"]) setattr(klass,  "end_"  +  tag,  d["end"])


Clone # 500
Anti-unification distance between two trees = 1
Total size of two trees = 46
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 205		Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 172
def  _init_from_text(self,text):
parts  =  text.split('  ');
for  part  in  parts:
key,val  =  re.match('(\w+)=(\S+)',part).groups()
setattr(self,key.lower(),val)		 def  _init_from_text(self,text):
parts  =  text.split(';  ');
for  part  in  parts:
key,val  =  re.match('(\w+)=(\S+)',part).groups()
setattr(self,key.lower(),val)
def  __repr__(self):
return  self.text		 def  __repr__(self):
return  self.text


Clone # 501
Anti-unification distance between two trees = 0
Total size of two trees = 46
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/lcc.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/lcc.py"
The first line is 24
compone=[0] compone=[0]
lccsal=[0] lccsal=[0]
for  i  in  range(wsize):
compone.append(((i+1)/float(wsize))*
((math.log((i+1)/float(wsize)))/l2))		 for  i  in  range(wsize):
compone.append(((i+1)/float(wsize))*((math.log((i+1)/float(wsize)))/l2))
window=seq[0:wsize] window=seq[0:wsize]


Clone # 502
Anti-unification distance between two trees = 4
Total size of two trees = 46
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/LocationParser.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Decode.py"
The first line is 170
def  __init__(self):
GenericScanner.__init__(self)		 def  __init__(self):
GenericScanner.__init__(self)
def  tokenize(self,  input):
self.rv  =  []
GenericScanner.tokenize(self,  input)
return  self.rv		 def  tokenize(self,  input):
self.rv  =  []
GenericScanner.tokenize(self,  input)
return  self.rv
def  t_double_colon(self,  input):
self.rv.append(Token("double_colon"))		 def  t_functionname(self,  input):
self.rv.append(FunctionName(input))


Clone # 503
Anti-unification distance between two trees = 4
Total size of two trees = 46
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 284		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 266
data  =  consumer.data data  =  consumer.data
next_item  =  self._scan_field(  text,  'Gene  Class:',  'Species  name:'  ) next_item  =  self._scan_field(  text,  'Molecule  type:',  'Species  name:'  )
data.gene_class  =  consumer.text_field(  next_item  ) data.molecule_type  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Plasmid  encoded:',  'Partial  gene:'  ) next_item  =  self._scan_field(  text,  'Shape  of  molecule:',  'Sequence  length:'  )


Clone # 504
Anti-unification distance between two trees = 4
Total size of two trees = 46
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 284		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 327
data  =  consumer.data data  =  consumer.data
next_item  =  self._scan_field(  text,  'Gene  Class:',  'Species  name:'  ) next_item  =  self._scan_field(  text,  'Product  Class:',  'Species  name:'  )
data.gene_class  =  consumer.text_field(  next_item  ) data.product_class  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Plasmid  encoded:',  'Partial  gene:'  ) next_item  =  self._scan_field(  text,  'Gene  Class:',  'Partial  protein:'  )


Clone # 505
Anti-unification distance between two trees = 4
Total size of two trees = 46
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 266		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 327
data  =  consumer.data data  =  consumer.data
next_item  =  self._scan_field(  text,  'Molecule  type:',  'Species  name:'  ) next_item  =  self._scan_field(  text,  'Product  Class:',  'Species  name:'  )
data.molecule_type  =  consumer.text_field(  next_item  ) data.product_class  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Shape  of &nbsp;molecule:',  'Sequence  length:'  ) next_item  =  self._scan_field(  text,  'Gene  Class:',  'Partial  protein:'  )


Clone # 506
Anti-unification distance between two trees = 2
Total size of two trees = 46
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqIO/generic.py"
The first line is 416		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqIO/generic.py"
The first line is 355
def  next(self):
if  not  self.ids:  self.ParseNexus()
self._n  +=  1
if  self._n  >=  len(self.ids):  return  None
name  =  self.ids[self._n]
seq  =  self.sequences[name]
return  SeqRecord(Seq(seq,  self.alphabet),id  =  name,  name  =  name,
description  =  '')		 def  next(self):
if  not  self.ids:  self.ParseAlignment()
self._n  +=  1
if  self._n  >=  len(self.ids):  return  None
name  =  self.ids[self._n]
seq  =  self.sequences[name]
return  SeqRecord(Seq(seq,  self.alphabet),id  =  name,  name  =  name,
description  =  'Clustal  Alignment')


Clone # 507
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/lcc.py"
The first line is 96		Source file "/home/peter/clone_digger/biopython-1.44/Bio/lcc.py"
The first line is 79
cant_g=cant_g-1 cant_t=cant_t-1
if  window[-1]=='A':
cant_a=cant_a+1
term_a=compone[cant_a]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window[-1]=='C':
cant_c=cant_c+1
term_c=compone[cant_c]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window[-1]=='T':
cant_t=cant_t+1
term_t=compone[cant_t]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))		 if  window[-1]=='A':
cant_a=cant_a+1
term_a=compone[cant_a]
term_t=compone[cant_t]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window[-1]=='C':
cant_c=cant_c+1
term_c=compone[cant_c]
term_t=compone[cant_t]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window[-1]=='G':
cant_g=cant_g+1
term_t=compone[cant_t]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))


Clone # 508
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/lcc.py"
The first line is 62		Source file "/home/peter/clone_digger/biopython-1.44/Bio/lcc.py"
The first line is 45
cant_c=cant_c-1 cant_a=cant_a-1
if  window[-1]=='A':
cant_a=cant_a+1
term_a=compone[cant_a]
term_c=compone[cant_c]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window[-1]=='T':
cant_t=cant_t+1
term_c=compone[cant_c]
term_t=compone[cant_t]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window[-1]=='G':
cant_g=cant_g+1
term_c=compone[cant_c]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))		 if  window[-1]=='C':
cant_c=cant_c+1
term_a=compone[cant_a]
term_c=compone[cant_c]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window[-1]=='T':
cant_t=cant_t+1
term_a=compone[cant_a]
term_t=compone[cant_t]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window[-1]=='G':
cant_g=cant_g+1
term_a=compone[cant_a]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))


Clone # 509
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/lcc.py"
The first line is 67		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/lcc.py"
The first line is 50
cant_c=cant_c-1 cant_a=cant_a-1
if  window.endswith('A'):
cant_a=cant_a+1
term_a=compone[cant_a]
term_c=compone[cant_c]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window.endswith('T'):
cant_t=cant_t+1
term_c=compone[cant_c]
term_t=compone[cant_t]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window.endswith('G'):
cant_g=cant_g+1
term_c=compone[cant_c]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))		 if  window.endswith('C'):
cant_c=cant_c+1
term_a=compone[cant_a]
term_c=compone[cant_c]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window.endswith('T'):
cant_t=cant_t+1
term_a=compone[cant_a]
term_t=compone[cant_t]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window.endswith('G'):
cant_g=cant_g+1
term_a=compone[cant_a]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))


Clone # 510
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/lcc.py"
The first line is 101		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/lcc.py"
The first line is 84
cant_g=cant_g-1 cant_t=cant_t-1
if  window.endswith('A'):
cant_a=cant_a+1
term_a=compone[cant_a]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window.endswith('C'):
cant_c=cant_c+1
term_c=compone[cant_c]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window.endswith('T'):
cant_t=cant_t+1
term_t=compone[cant_t]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))		 if  window.endswith('A'):
cant_a=cant_a+1
term_a=compone[cant_a]
term_t=compone[cant_t]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window.endswith('C'):
cant_c=cant_c+1
term_c=compone[cant_c]
term_t=compone[cant_t]
lccsal.append(-(term_a+term_c+term_t+term_g))
elif  window.endswith('G'):
cant_g=cant_g+1
term_t=compone[cant_t]
term_g=compone[cant_g]
lccsal.append(-(term_a+term_c+term_t+term_g))


Clone # 511
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 395		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 272
class  UrlName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  RuleToMany(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel((u',',  [(u'Rule',  ''),  (u'Separator',  '')],  ''))		 class  ObjectSelector(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel((u',',  [(u'Database',  ''),  (u'ObjectList',  '')],  ''))


Clone # 512
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 294		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 395
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  UrlName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SubObjectSelector(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel((u',',  [(u'Database',  ''),  (u'SubProvider',  '')],  ''))		 class  RuleToMany(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel((u',',  [(u'Rule',  ''),  (u'Separator',  '')],  ''))


Clone # 513
Anti-unification distance between two trees = 3
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 294		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 272
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SubObjectSelector(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel((u',',  [(u'Database',  ''),  (u'SubProvider',  '')],  ''))		 class  ObjectSelector(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel((u',',  [(u'Database',  ''),  (u'ObjectList',  '')],  ''))


Clone # 514
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Compound/__init__.py"
The first line is 111		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 147
def  _dblinks(self):
s  =  []
for  entry  in  self.dblinks:
s.append(entry[0]  +  ":  "  +  "  ".join(entry[1]))
return  _write_kegg("DBLINKS",
[_wrap_kegg(l,  wrap_rule  =  id_wrap(9))  \
for  l  in  s])		 def  _genes(self):
s  =  []
for  entry  in  self.genes:
s.append(entry[0]  +  ":  "  +  "  ".join(entry[1]))
return  _write_kegg("GENES",
[_wrap_kegg(l,  wrap_rule  =  id_wrap(5))  \
for  l  in  s])


Clone # 515
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 431		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427
def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)		 def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)
def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)		 def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)


Clone # 516
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 439		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 435
def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)		 def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)
def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)		 def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)


Clone # 517
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 448		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 444
def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)		 def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)
def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)		 def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)


Clone # 518
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 456		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 452
def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)		 def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)
def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)		 def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)


Clone # 519
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 464		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 460
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)
def  hsp_seqalign_subject_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_end",  expr,  attrs)		 def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)


Clone # 520
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 435		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427
def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)		 def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)
def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)		 def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)


Clone # 521
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 444		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 435
def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)		 def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)
def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)		 def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)


Clone # 522
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 452		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 444
def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)		 def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)
def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)		 def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)


Clone # 523
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 460		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 452
def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)		 def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)


Clone # 524
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 439		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427
def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)		 def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)
def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)		 def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)


Clone # 525
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 448		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 435
def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)		 def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)
def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)		 def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)


Clone # 526
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 456		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 444
def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)		 def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)
def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)		 def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)


Clone # 527
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 464		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 452
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)
def  hsp_seqalign_subject_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_end",  expr,  attrs)		 def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)


Clone # 528
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 444		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427
def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)		 def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)
def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)		 def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)


Clone # 529
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 452		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 435
def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)		 def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)
def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)		 def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)


Clone # 530
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 460		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 444
def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)		 def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)


Clone # 531
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 448		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427
def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)		 def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)
def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)		 def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)


Clone # 532
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 456		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 435
def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)		 def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)
def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)		 def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)


Clone # 533
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 464		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 444
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)
def  hsp_seqalign_subject_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_end",  expr,  attrs)		 def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)


Clone # 534
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 452		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427
def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)		 def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)
def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)		 def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)


Clone # 535
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 460		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 435
def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)		 def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)


Clone # 536
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 460		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336
def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)		 def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)


Clone # 537
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 456		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427
def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)		 def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)
def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)		 def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)


Clone # 538
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 464		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 435
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)
def  hsp_seqalign_subject_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_end",  expr,  attrs)		 def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)


Clone # 539
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 456
def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)		 def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)
def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)		 def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)


Clone # 540
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 452
def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)		 def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)
def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)		 def  hsp_seqalign_query_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_start",  expr,  attrs)


Clone # 541
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 448
def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)		 def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)
def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)		 def  hsp_seqalign(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign",  expr,  attrs)


Clone # 542
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 444
def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)		 def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)
def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)		 def  hsp_seqalign_subject_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_name",  expr,  attrs)


Clone # 543
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 439
def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)		 def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)
def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)		 def  hsp_seqalign_query_name(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_name",  expr,  attrs)


Clone # 544
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 435
def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)		 def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)
def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)		 def  hsp_seqalign_query_leader(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_leader",  expr,  attrs)


Clone # 545
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 431
def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)		 def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)
def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)		 def  hsp_seqalign_subject_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_seq",  expr,  attrs)


Clone # 546
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 460		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427
def  hsp_seqalign_query_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_end",  expr,  attrs)		 def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)


Clone # 547
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 464		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)
def  hsp_seqalign_subject_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_end",  expr,  attrs)		 def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)


Clone # 548
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336
def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)		 def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)
def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)		 def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)


Clone # 549
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 336		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 340
def  application_version(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:application_version",  expr,  attrs)		 def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)
def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)		 def  search_table(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_table",  expr,  attrs)


Clone # 550
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 464		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427
def  hsp_seqalign_subject_start(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_start",  expr,  attrs)		 def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)
def  hsp_seqalign_subject_end(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_subject_end",  expr,  attrs)		 def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)


Clone # 551
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 427		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Std.py"
The first line is 340
def  hsp_seqalign_query_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_query_seq",  expr,  attrs)		 def  search_header(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_header",  expr,  attrs)
def  hsp_seqalign_homology_seq(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:hsp_seqalign_homology_seq",  expr,  attrs)		 def  search_table(expr,  attrs  =  {}):
attrs  =  _check_attrs(attrs,  ())
return  Group("bioformat:search_table",  expr,  attrs)


Clone # 552
Anti-unification distance between two trees = 0
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 140		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Compound/__init__.py"
The first line is 87
def  _pathway(self):
s  =  []
for  entry  in  self.pathway:
s.append(entry[0]  +  ":  "  +  entry[1]  +  "    "  +  entry[2])
return  _write_kegg("PATHWAY",
[_wrap_kegg(l,  wrap_rule  =  id_wrap(16))  \
for  l  in  s])		 def  _pathway(self):
s  =  []
for  entry  in  self.pathway:
s.append(entry[0]  +  ":  "  +  entry[1]  +  "    "  +  entry[2])
return  _write_kegg("PATHWAY",
[_wrap_kegg(l,  wrap_rule  =  id_wrap(16))  \
for  l  in  s])


Clone # 553
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 140		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 154
def  _pathway(self):
s  =  []
for  entry  in  self.pathway:
s.append(entry[0]  +  ":  "  +  entry[1]  +  "    "  +  entry[2])
return  _write_kegg("PATHWAY",
[_wrap_kegg(l,  wrap_rule  =  id_wrap(16))  \
for  l  in  s])		 def  _disease(self):
s  =  []
for  entry  in  self.disease:
s.append(entry[0]  +  ":  "  +  entry[1]  +  "    "  +  entry[2])
return  _write_kegg("DISEASE",
[_wrap_kegg(l,  wrap_rule  =  id_wrap(13))  \
for  l  in  s])


Clone # 554
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Compound/__init__.py"
The first line is 87		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 154
def  _pathway(self):
s  =  []
for  entry  in  self.pathway:
s.append(entry[0]  +  ":  "  +  entry[1]  +  "    "  +  entry[2])
return  _write_kegg("PATHWAY",
[_wrap_kegg(l,  wrap_rule  =  id_wrap(16))  \
for  l  in  s])		 def  _disease(self):
s  =  []
for  entry  in  self.disease:
s.append(entry[0]  +  ":  "  +  entry[1]  +  "    "  +  entry[2])
return  _write_kegg("DISEASE",
[_wrap_kegg(l,  wrap_rule  =  id_wrap(13))  \
for  l  in  s])


Clone # 555
Anti-unification distance between two trees = 3
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 275		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Compound/__init__.py"
The first line is 176
class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.KEGG.Compound.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.KEGG.Compound.parse(handle)  instead.  It  also  returns  an  iterator.",
DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.KEGG.Compound.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.KEGG.Compound.parse(handle)  instead.  It  also  returns  an  iterator.",
DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)


Clone # 556
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 275		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Map/__init__.py"
The first line is 28
class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.KEGG.Compound.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.KEGG.Compound.parse(handle)  instead.  It  also  returns  an  iterator.",
DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.KEGG.Map.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.KEGG.Map.parse(handle)  instead.  It  also  returns  an  iterator.",  DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)


Clone # 557
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Compound/__init__.py"
The first line is 176		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Map/__init__.py"
The first line is 28
class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.KEGG.Compound.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.KEGG.Compound.parse(handle)  instead.  It  also  returns  an  iterator.",
DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.KEGG.Map.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.KEGG.Map.parse(handle)  instead.  It  also  returns  an  iterator.",  DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)


Clone # 558
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 164		Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 127
self.protgi  =  '' self.mgc  =  ''
self.protid  =  '' self.seqtype  =  ''
self.pct  =  '' self.Trace  =  ''
self.aln  =  '' self.peripheral  =  ''
if  not  text==None:
self.text=text
return  self._init_from_text(text)		 if  not  text==None:
self.text=text
return  self._init_from_text(text)


Clone # 559
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 140		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 142
composite_key  =  prefix  +  'path0' composite_key  =  prefix  +  'id0'
output  =  output  +  '(%s:'  %  self.cell_dict[  composite_key  ] output  =  output  +  '%s,'  %  self.cell_dict[  composite_key  ]
composite_key  =  prefix  +  'id0' composite_key  =  prefix  +  'name0'
output  =  output  +  '%s,'  %  self.cell_dict[  composite_key  ] output  =  output  +  '"%s")\n'  %  self.cell_dict[  composite_key  ]


Clone # 560
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/LocationParser.py"
The first line is 73		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/LocationParser.py"
The first line is 65
class  Between:
def  __init__(self,  low,  high):
self.low  =  low
self.high  =  high
def  __repr__(self):
return  "Between(%r,  %r)"  %  (self.low,  self.high)		 class  TwoBound:
def  __init__(self,  low,  high):
self.low  =  low
self.high  =  high
def  __repr__(self):
return  "TwoBound(%r,  %r)"  %  (self.low,  self.high)
class  Range:
def  __init__(self,  low,  high):
self.low  =  low
self.high  =  high
def  __repr__(self):
return  "Range(%r,  %r)"  %  (self.low,  self.high)		 class  Between:
def  __init__(self,  low,  high):
self.low  =  low
self.high  =  high
def  __repr__(self):
return  "Between(%r,  %r)"  %  (self.low,  self.high)


Clone # 561
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 143		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 149
def  subsets_tag(  self,  content  ):
self.state  =  "subsets_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []		 def  reduced_system_tag(  self,  content  ):
self.state  =  "reduced_system_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []
def  reduced_system_tag(  self,  content  ):
self.state  =  "reduced_system_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []		 def  convex_basis_tag(  self,  content  ):
self.state  =  "convex_basis_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []


Clone # 562
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 155		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 161
def  convex_basis_tag(  self,  content  ):
self.state  =  "convex_basis_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []		 def  conservation_relations_tag(  self,  content  ):
self.state  =  "conservation_relations_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []
def  conservation_relations_tag(  self,  content  ):
self.state  =  "conservation_relations_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []		 def  elementary_modes_tag(  self,  content  ):
self.state  =  "elementary_modes_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []


Clone # 563
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 143		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 155
def  subsets_tag(  self,  content  ):
self.state  =  "subsets_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []		 def  convex_basis_tag(  self,  content  ):
self.state  =  "convex_basis_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []
def  reduced_system_tag(  self,  content  ):
self.state  =  "reduced_system_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []		 def  conservation_relations_tag(  self,  content  ):
self.state  =  "conservation_relations_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []


Clone # 564
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 143		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 161
def  subsets_tag(  self,  content  ):
self.state  =  "subsets_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []		 def  conservation_relations_tag(  self,  content  ):
self.state  =  "conservation_relations_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []
def  reduced_system_tag(  self,  content  ):
self.state  =  "reduced_system_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []		 def  elementary_modes_tag(  self,  content  ):
self.state  =  "elementary_modes_state"
self._vectors  =  []
self._enzymes  =  []
self._reactions  =  []


Clone # 565
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 216		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 149
def  end_taxonomy_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_cd_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_taxonomy_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_cd_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_taxonomy_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_cd_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_aligned_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 566
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 228		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 161
def  end_aligned_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_description_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_aligned_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_aligned_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_description_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_representative_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_status_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 567
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 240		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 173
def  end_representative_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_status_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_representative_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_status_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_representative_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_status_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_range_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_source_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 568
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 252		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 185
def  end_range_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_source_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_range_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_source_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_range_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_source_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_sequence_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_date_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 569
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 158		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 213
def  start_description_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_taxonomy_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_description_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_taxonomy_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_description_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_taxonomy_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_description_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_taxonomy_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 570
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 170		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 225
def  start_status_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_aligned_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_status_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_aligned_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_status_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_aligned_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_status_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_aligned_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 571
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 182		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 237
def  start_source_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_representative_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_source_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_representative_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_source_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_representative_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_source_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_representative_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 572
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 194		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 249
def  start_date_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_range_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_date_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_range_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_date_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_range_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_date_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_range_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 573
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 161		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 149
def  end_description_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_cd_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_description_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_cd_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_description_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_cd_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_status_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 574
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 173		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 161
def  end_status_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_description_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_status_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_status_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_description_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_source_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_status_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 575
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 185		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 173
def  end_source_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_status_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_source_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_status_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_source_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_status_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_date_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_source_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 576
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 197		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 185
def  end_date_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_source_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_date_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_source_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_date_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_source_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_reference_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_date_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 577
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 225		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 213
def  start_aligned_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_taxonomy_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_aligned_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_taxonomy_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_aligned_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_taxonomy_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_aligned_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_taxonomy_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 578
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 225
def  start_representative_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_aligned_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_representative_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_aligned_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_representative_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_aligned_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_representative_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_aligned_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 579
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 249		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 237
def  start_range_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_representative_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_range_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_representative_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_range_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_representative_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_range_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_representative_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 580
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 228		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 149
def  end_aligned_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_cd_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_aligned_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_cd_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_aligned_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_cd_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_representative_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 581
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 240		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 161
def  end_representative_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_description_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_representative_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_representative_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_description_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_range_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_status_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 582
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 252		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 173
def  end_range_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_status_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_range_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_status_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_range_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_status_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_sequence_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_source_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 583
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 170		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 213
def  start_status_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_taxonomy_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_status_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_taxonomy_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_status_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_taxonomy_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_status_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_taxonomy_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 584
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 182		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 225
def  start_source_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_aligned_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_source_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_aligned_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_source_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_aligned_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_source_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_aligned_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 585
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 194		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 237
def  start_date_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_representative_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_date_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_representative_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_date_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_representative_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_date_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_representative_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 586
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 173		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 149
def  end_status_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_cd_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_status_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_cd_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_status_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_cd_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_source_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 587
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 185		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 161
def  end_source_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_description_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_source_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_source_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_description_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_date_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_status_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 588
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 197		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 173
def  end_date_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_status_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_date_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_status_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_date_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_status_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_reference_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_source_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 589
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 213
def  start_representative_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_taxonomy_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_representative_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_taxonomy_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_representative_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_taxonomy_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_representative_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_taxonomy_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 590
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 249		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 225
def  start_range_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_aligned_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_range_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_aligned_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_range_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_aligned_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_range_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_aligned_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 591
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 240		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 149
def  end_representative_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_cd_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_representative_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_cd_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_representative_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_cd_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_range_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 592
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 252		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 161
def  end_range_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_description_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_range_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_range_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_description_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_sequence_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_status_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 593
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 182		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 213
def  start_source_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_taxonomy_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_source_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_taxonomy_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_source_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_taxonomy_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_source_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_taxonomy_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 594
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 194		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 225
def  start_date_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_aligned_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_date_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_aligned_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_date_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_aligned_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_date_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_aligned_contents_multiline(  self,  cdd_record  ):
self.add_entry()


Clone # 595
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 185		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 149
def  end_source_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_cd_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_source_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_cd_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_source_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_cd_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_date_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 596
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 197		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 161
def  end_date_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_description_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_date_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_description_contents_multiline(  self,  text,  attrs  ):
self.save_characters()
def  end_date_contents_multiline(  self,  cdd_record  ):
self.add_entry()		 def  end_description_contents_multiline(  self,  cdd_record  ):
self.add_entry()
def  start_reference_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_status_tag(  self,  text,  attrs  ):
self.save_characters()


Clone # 597
Anti-unification distance between two trees = 3
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Alphabet/Reduced.py"
The first line is 45		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Alphabet/Reduced.py"
The first line is 70
murphy_10_tab  =  {"L":  "L",
"V":  "L",
"I":  "L",
"M":  "L",
"C":  "C",
"A":  "A",
"G":  "G",
"S":  "S",
"T":  "S",
"P":  "P",
"F":  "F",
"Y":  "F",
"W":  "F",
"E":  "E",
"D":  "E",
"N":  "E",
"Q":  "E",
"K":  "K",
"R":  "K",
"H":  "H"}		 murphy_8_tab    =  {"L":  "L",
"V":  "L",
"I":  "L",
"M":  "L",
"C":  "L",
"A":  "A",
"G":  "A",
"S":  "S",
"T":  "S",
"P":  "P",
"F":  "F",
"Y":  "F",
"W":  "F",
"E":  "E",
"D":  "E",
"N":  "E",
"Q":  "E",
"K":  "K",
"R":  "K",
"H":  "H"}


Clone # 598
Anti-unification distance between two trees = 0
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/Comparative.py"
The first line is 67		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/Distribution.py"
The first line is 70
if  self.output_format  ==  'pdf':
out_canvas  =  canvas.Canvas(output_file,  pagesize  =  self.page_size)
renderPDF.draw(cur_drawing,  out_canvas,  0,  0)
out_canvas.showPage()
out_canvas.save()
elif  self.output_format  ==  'eps':
renderPS.drawToFile(cur_drawing,  output_file)
raise  ValueError("Invalid  output  format  %s"  %  self.output_format)		 if  self.output_format  ==  'pdf':
out_canvas  =  canvas.Canvas(output_file,  pagesize  =  self.page_size)
renderPDF.draw(cur_drawing,  out_canvas,  0,  0)
out_canvas.showPage()
out_canvas.save()
elif  self.output_format  ==  'eps':
renderPS.drawToFile(cur_drawing,  output_file)
raise  ValueError("Invalid  output  format  %s"  %  self.output_format)


Clone # 599
Anti-unification distance between two trees = 0
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/Comparative.py"
The first line is 67		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/BasicChromosome.py"
The first line is 147
if  self.output_format  ==  'pdf':
out_canvas  =  canvas.Canvas(output_file,  pagesize  =  self.page_size)
renderPDF.draw(cur_drawing,  out_canvas,  0,  0)
out_canvas.showPage()
out_canvas.save()
elif  self.output_format  ==  'eps':
renderPS.drawToFile(cur_drawing,  output_file)
raise  ValueError("Invalid  output  format  %s"  %  self.output_format)		 if  self.output_format  ==  'pdf':
out_canvas  =  canvas.Canvas(output_file,  pagesize  =  self.page_size)
renderPDF.draw(cur_drawing,  out_canvas,  0,  0)
out_canvas.showPage()
out_canvas.save()
elif  self.output_format  ==  'eps':
renderPS.drawToFile(cur_drawing,  output_file)
raise  ValueError("Invalid  output  format  %s"  %  self.output_format)


Clone # 600
Anti-unification distance between two trees = 0
Total size of two trees = 44
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Compound/__init__.py"
The first line is 104		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 161
def  _structures(self):
s  =  []
for  entry  in  self.structures:
s.append(entry[0]  +  ":  "  +  "    ".join(entry[1])  +  "    ")
return  _write_kegg("STRUCTURES",
[_wrap_kegg(l,  wrap_rule  =  struct_wrap(5))  \
for  l  in  s])		 def  _structures(self):
s  =  []
for  entry  in  self.structures:
s.append(entry[0]  +  ":  "  +  "    ".join(entry[1])  +  "    ")
return  _write_kegg("STRUCTURES",
[_wrap_kegg(l,  wrap_rule  =  struct_wrap(5))  \
for  l  in  s])


Clone # 601
Anti-unification distance between two trees = 2
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 303		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIWWW.py"
The first line is 250
if  not  attempt_read_and_call(
uhandle,  consumer.description_header,
has_re=re.compile(r'Score  +E')):
attempt_read_and_call(uhandle,  consumer.no_hits,
contains='No  hits  found')
read_and_call_while(uhandle,  consumer.noevent,  blank=1)
consumer.end_descriptions()
return		 if  not  attempt_read_and_call(
uhandle,  consumer.description_header,
has_re=re.compile(r"Score  {4,5}E")):
attempt_read_and_call(uhandle,  consumer.no_hits,
contains='No  significant  similarity')
read_and_call_while(uhandle,  consumer.noevent,  blank=1)
consumer.end_descriptions()
return
read_and_call(uhandle,  consumer.description_header,
start='Sequences  producing')		 read_and_call(uhandle,  consumer.description_header,
start='Sequences  producing')


Clone # 602
Anti-unification distance between two trees = 3
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 461		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 91
def  _scan_nr(self,  uhandle,  consumer):
self._scan_line('NR',  uhandle,  consumer.numerical_results,
any_number=1)		 def  _scan_cf(self,  uhandle,  consumer):
self._scan_line('CF',  uhandle,  consumer.cofactor, &nbsp;any_number=1)
def  _scan_cc(self,  uhandle,  consumer):
self._scan_line('CC',  uhandle,  consumer.comment,  any_number=1)		 def  _scan_cc(self,  uhandle,  consumer):
self._scan_line('CC',  uhandle,  consumer.comment,  any_number=1)


Clone # 603
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 476		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 104
def  _scan_do(self,  uhandle,  consumer):
self._scan_line('DO',  uhandle,  consumer.documentation,  exactly_one=1)		 def  _scan_dr(self,  uhandle,  consumer):
self._scan_line('DR',  uhandle,  consumer.databank_reference,
any_number=1)
def  _scan_terminator(self,  uhandle,  consumer):
self._scan_line('//',  uhandle,  consumer.terminator,  exactly_one=1)		 def  _scan_terminator(self,  uhandle,  consumer):
self._scan_line('//',  uhandle,  consumer.terminator,  exactly_one=1)


Clone # 604
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 476		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 508
def  _scan_do(self,  uhandle,  consumer):
self._scan_line('DO',  uhandle,  consumer.documentation,  exactly_one=1)		 def  _scan_sequence_data(self,  uhandle,  consumer):
self._scan_line('    ',  uhandle,  consumer.sequence_data,  one_or_more=1)
def  _scan_terminator(self,  uhandle,  consumer):
self._scan_line('//',  uhandle,  consumer.terminator,  exactly_one=1)		 def  _scan_terminator(self,  uhandle,  consumer):
self._scan_line('//',  uhandle,  consumer.terminator,  exactly_one=1)


Clone # 605
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 104		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 508
def  _scan_dr(self,  uhandle,  consumer):
self._scan_line('DR',  uhandle,  consumer.databank_reference,
any_number=1)		 def  _scan_sequence_data(self,  uhandle,  consumer):
self._scan_line('    ',  uhandle,  consumer.sequence_data,  one_or_more=1)
def  _scan_terminator(self,  uhandle,  consumer):
self._scan_line('//',  uhandle,  consumer.terminator,  exactly_one=1)		 def  _scan_terminator(self,  uhandle,  consumer):
self._scan_line('//',  uhandle,  consumer.terminator,  exactly_one=1)


Clone # 606
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 78		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 433
def  _scan_id(self,  uhandle,  consumer):
self._scan_line('ID',  uhandle,  consumer.identification,  exactly_one=1)		 def  _scan_dt(self,  uhandle,  consumer):
self._scan_line('DT',  uhandle,  consumer.date,  exactly_one=1)
def  _scan_de(self,  uhandle,  consumer):
self._scan_line('DE',  uhandle,  consumer.description,  one_or_more=1)		 def  _scan_de(self,  uhandle,  consumer):
self._scan_line('DE',  uhandle,  consumer.description,  exactly_one=1)


Clone # 607
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 100		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 465
def  _scan_pr(self,  uhandle,  consumer):
self._scan_line('PR',  uhandle,  consumer.prosite_reference,
any_number=1)		 def  _scan_cc(self,  uhandle,  consumer):
self._scan_line('CC',  uhandle,  consumer.comment,  any_number=1)
def  _scan_dr(self,  uhandle,  consumer):
self._scan_line('DR',  uhandle,  consumer.databank_reference,
any_number=1)		 def  _scan_dr(self,  uhandle,  consumer):
self._scan_line('DR',  uhandle,  consumer.database_reference,
any_number=1)


Clone # 608
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 405		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 81
def  _scan_de(self,  uhandle,  consumer):
self._scan_line('DE',  uhandle,  consumer.description,  any_number=1)		 def  _scan_de(self,  uhandle,  consumer):
self._scan_line('DE',  uhandle,  consumer.description,  one_or_more=1)
def  _scan_gn(self,  uhandle,  consumer):
self._scan_line('GN',  uhandle,  consumer.gene_name,  any_number=1)		 def  _scan_an(self,  uhandle,  consumer):
self._scan_line('AN',  uhandle,  consumer.alternate_name,  any_number=1)


Clone # 609
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 405		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 436
def  _scan_de(self,  uhandle,  consumer):
self._scan_line('DE',  uhandle,  consumer.description,  any_number=1)		 def  _scan_de(self,  uhandle,  consumer):
self._scan_line('DE',  uhandle,  consumer.description,  exactly_one=1)
def  _scan_gn(self,  uhandle,  consumer):
self._scan_line('GN',  uhandle,  consumer.gene_name,  any_number=1)		 def  _scan_pa(self,  uhandle,  consumer):
self._scan_line('PA',  uhandle,  consumer.pattern,  any_number=1)


Clone # 610
Anti-unification distance between two trees = 3
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 91		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 483
def  _scan_cf(self,  uhandle,  consumer):
self._scan_line('CF',  uhandle,  consumer.cofactor,  any_number=1)		 def  _scan_rl(self,  uhandle,  consumer):
self._scan_line('RL',  uhandle,  consumer.reference_location,
any_number=1)
def  _scan_cc(self,  uhandle,  consumer):
self._scan_line('CC',  uhandle,  consumer.comment,  any_number=1)		 def  _scan_cc(self,  uhandle,  consumer):
self._scan_line('CC',  uhandle,  consumer.comment,  any_number=1)


Clone # 611
Anti-unification distance between two trees = 4
Total size of two trees = 44
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 100		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 489
def  _scan_pr(self,  uhandle,  consumer):
self._scan_line('PR',  uhandle,  consumer.prosite_reference,
any_number=1)		 def  _scan_cc(self,  uhandle,  consumer):
self._scan_line('CC',  uhandle,  consumer.comment,  any_number=1)
def  _scan_dr(self,  uhandle,  consumer):
self._scan_line('DR',  uhandle,  consumer.databank_reference,
any_number=1)		 def  _scan_dr(self,  uhandle,  consumer):
self._scan_line('DR',  uhandle,  consumer.database_cross_reference,
any_number=1)


Clone # 612
Anti-unification distance between two trees = 4
Total size of two trees = 43
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 275		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Geo/__init__.py"
The first line is 62
class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.KEGG.Compound.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.KEGG.Compound.parse(handle)  instead.  It  also  returns  an  iterator.",
DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.Geo.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.Geo.parse(handle)  instead.  It  also  returns  an  iterator.""",
DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)


Clone # 613
Anti-unification distance between two trees = 4
Total size of two trees = 43
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Compound/__init__.py"
The first line is 176		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Geo/__init__.py"
The first line is 62
class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.KEGG.Compound.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.KEGG.Compound.parse(handle)  instead.  It  also  returns  an  iterator.",
DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.Geo.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.Geo.parse(handle)  instead.  It  also  returns  an  iterator.""",
DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)


Clone # 614
Anti-unification distance between two trees = 4
Total size of two trees = 43
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Geo/__init__.py"
The first line is 62		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Map/__init__.py"
The first line is 28
class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.Geo.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.Geo.parse(handle)  instead.  It  also  returns  an  iterator.""",
DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)		 class  Iterator:
def  __init__(self,  handle,  parser  =  None):
import  warnings
warnings.warn("Bio.KEGG.Map.Iterator(handle,  parser)  is  deprecated.  Please  use  Bio.KEGG.Map.parse(handle)  instead.  It  also  returns  an  iterator.",  DeprecationWarning)
self.records  =  parse(handle)
def  next(self):
return  self.records.next()
def  __iter__(self):
return  iter(self.next,  None)


Clone # 615
Anti-unification distance between two trees = 4
Total size of two trees = 43
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1081		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1093
def  reference_bases(self,  content):
self._cur_reference.bases  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content
def  authors(self,  content):
self._cur_reference.authors  =  content		 def  medline_id(self,  content):
self._cur_reference.medline_id  =  content
def  consrtm(self,  content):
self._cur_reference.consrtm  =  content		 def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content


Clone # 616
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))


Clone # 617
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))


Clone # 618
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 619
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 620
Anti-unification distance between two trees = 2
Total size of two trees = 42
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 220		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Ace.py"
The first line is 212
class  RecordParser(AbstractParser):
def  __init__(self):
self._scanner  =  _Scanner()
self._consumer  =  _Consumer()
def  parse(self,  handle):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
self._scanner.feed(uhandle,  self._consumer)
return  self._consumer.data		 class  RecordParser(AbstractParser):
def  __init__(self):
self._scanner  =  _Scanner()
self._consumer  =  _RecordConsumer()
def  parse(self,  handle):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
self._scanner.feed(uhandle,  self._consumer)
return  self._consumer.data


Clone # 621
Anti-unification distance between two trees = 2
Total size of two trees = 42
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 220		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 92
class  RecordParser(AbstractParser):
def  __init__(self):
self._scanner  =  _Scanner()
self._consumer  =  _Consumer()
def  parse(self,  handle):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
self._scanner.feed(uhandle,  self._consumer)
return  self._consumer.data		 class  RecordParser(AbstractParser):
def  __init__(self):
self._scanner  =  _Scanner()
self._consumer  =  _RecordConsumer()
def  parse(self,  handle):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
self._scanner.feed(uhandle,  self._consumer)
return  self._consumer.data


Clone # 622
Anti-unification distance between two trees = 1
Total size of two trees = 42
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Ace.py"
The first line is 212		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Phd.py"
The first line is 92
class  RecordParser(AbstractParser):
def  __init__(self):
self._scanner  =  _Scanner()
self._consumer  =  _RecordConsumer()
def  parse(self,  handle):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
self._scanner.feed(uhandle,  self._consumer)
return  self._consumer.data		 class  RecordParser(AbstractParser):
def  __init__(self):
self._scanner  =  _Scanner()
self._consumer  =  _RecordConsumer()
def  parse(self,  handle):
if  isinstance(handle,  File.UndoHandle):
uhandle  =  handle
uhandle  =  File.UndoHandle(handle)
self._scanner.feed(uhandle,  self._consumer)
return  self._consumer.data


Clone # 623
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/config/FormatRegistry.py"
The first line is 77		Source file "/home/peter/clone_digger/biopython-1.44/Bio/config/FormatRegistry.py"
The first line is 94
all_formats  =  self._build_parent_path(from_format) all_formats  =  self._build_child_path(to_format)
for  format  in  all_formats:
name  =  basemodulename  +  "."  +  format.abbrev
module  =  _support.safe_load_module(name)
if  module  is  not  None:
break
raise  TypeError("Cannot  find  builder  for  %r"  %  to_io.abbrev)		 for  format  in  all_formats:
name  =  basemodulename  +  "."  +  format.abbrev
module  =  _support.safe_load_module(name)
if  module  is  not  None:
break
raise  TypeError("Cannot  find  writer  for  %r"  %  from_io.abbrev)


Clone # 624
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/POM.py"
The first line is 434		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/POM.py"
The first line is 450
def  _attr_str(self):
attrs  =  map(lambda  t:  '  %s="%s"'  %  t,  map(lambda  t:  (t[0],  escape(str(t[1]))),  filter(lambda  t:  t[1]  is  not  None,  self._attribs.items())))
return  "".join(attrs)		 def  _attr_unistr(self):
attrs  =  map(lambda  t:  u'  %s="%s"'  %  t,  map(lambda  t:  (t[0],  escape(unicode(t[1]))),  filter(lambda  t:  t[1]  is  not  None,  self._attribs.items())))
return  u"".join(attrs)


Clone # 625
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/pairwise2.py"
The first line is 517		Source file "/home/peter/clone_digger/biopython-1.44/Bio/pairwise2.py"
The first line is 501
open_score  =  score_matrix[row-1][col-1]  +  first_A_gap open_score  =  score_matrix[row-1][col-1]  +  first_B_gap
extend_score  =  row_cache_score[row-1]  +  extend_A extend_score  =  col_cache_score[col-1]  +  extend_B
open_score_rint,  extend_score_rint  =  \
rint(open_score),  rint(extend_score)		 open_score_rint,  extend_score_rint  =  \
rint(open_score),  rint(extend_score)


Clone # 626
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1093
def  segment(self,  content):
self.data.segment  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content
def  source(self,  content):
self.data.source  =  content		 def  medline_id(self,  content):
self._cur_reference.medline_id  =  content
def  organism(self,  content):
self.data.organism  =  content		 def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content


Clone # 627
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1096		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059
def  medline_id(self,  content):
self._cur_reference.medline_id  =  content		 def  segment(self,  content):
self.data.segment  =  content
def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content		 def  source(self,  content):
self.data.source  =  content
def  remark(self,  content):
self._cur_reference.remark  =  content		 def  organism(self,  content):
self.data.organism  =  content


Clone # 628
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 564		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059
def  journal(self,  content):
self._current_ref.journal  =  content		 def  segment(self,  content):
self.data.segment  =  content
def  medline_id(self,  content):
self._current_ref.medline_id  =  content		 def  source(self,  content):
self.data.source  =  content
def  pubmed_id(self,  content):
self._current_ref.pubmed_id  =  content		 def  organism(self,  content):
self.data.organism  =  content


Clone # 629
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 558		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  consrtm(self,  content):
self._current_ref.consrtm  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  title(self,  content):
self._current_ref.title  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  journal(self,  content):
self._current_ref.journal  =  content		 def  title(self,  content):
self._cur_reference.title  =  content


Clone # 630
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041
def  authors(self,  content):
self._current_ref.authors  =  content		 def  nid(self,  content):
self.data.nid  =  content
def  consrtm(self,  content):
self._current_ref.consrtm  =  content		 def  pid(self,  content):
self.data.pid  =  content
def  title(self,  content):
self._current_ref.title  =  content		 def  version(self,  content):
self.data.version  =  content


Clone # 631
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1090
def  segment(self,  content):
self.data.segment  =  content		 def  title(self,  content):
self._cur_reference.title  =  content
def  source(self,  content):
self.data.source  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content
def  organism(self,  content):
self.data.organism  =  content		 def  medline_id(self,  content):
self._cur_reference.medline_id  =  content


Clone # 632
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041
def  authors(self,  content):
self._cur_reference.authors  =  content		 def  nid(self,  content):
self.data.nid  =  content
def  consrtm(self,  content):
self._cur_reference.consrtm  =  content		 def  pid(self,  content):
self.data.pid  =  content
def  title(self,  content):
self._cur_reference.title  =  content		 def  version(self,  content):
self.data.version  =  content


Clone # 633
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 558		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019
def  consrtm(self,  content):
self._current_ref.consrtm  =  content		 def  locus(self,  content):
self.data.locus  =  content
def  title(self,  content):
self._current_ref.title  =  content		 def  size(self,  content):
self.data.size  =  content
def  journal(self,  content):
self._current_ref.journal  =  content		 def  residue_type(self,  content):
self.data.residue_type  =  content


Clone # 634
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 561		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  title(self,  content):
self._current_ref.title  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  journal(self,  content):
self._current_ref.journal  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  medline_id(self,  content):
self._current_ref.medline_id  =  content		 def  title(self,  content):
self._cur_reference.title  =  content


Clone # 635
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 558		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041
def  consrtm(self,  content):
self._current_ref.consrtm  =  content		 def  nid(self,  content):
self.data.nid  =  content
def  title(self,  content):
self._current_ref.title  =  content		 def  pid(self,  content):
self.data.pid  =  content
def  journal(self,  content):
self._current_ref.journal  =  content		 def  version(self,  content):
self.data.version  =  content


Clone # 636
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1025		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  segment(self,  content):
self.data.segment  =  content
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  source(self,  content):
self.data.source  =  content
def  date(self,  content):
self.data.date  =  content		 def  organism(self,  content):
self.data.organism  =  content


Clone # 637
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1087
def  locus(self,  content):
self.data.locus  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  size(self,  content):
self.data.size  =  content		 def  title(self,  content):
self._cur_reference.title  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content


Clone # 638
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1028		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1096
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  medline_id(self,  content):
self._cur_reference.medline_id  =  content
def  date(self,  content):
self.data.date  =  content		 def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content
def  definition(self,  content):
self.data.definition  =  content		 def  remark(self,  content):
self._cur_reference.remark  =  content


Clone # 639
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  locus(self,  content):
self.data.locus  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  size(self,  content):
self.data.size  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  title(self,  content):
self._cur_reference.title  =  content


Clone # 640
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1028		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1093
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content
def  date(self,  content):
self.data.date  =  content		 def  medline_id(self,  content):
self._cur_reference.medline_id  =  content
def  definition(self,  content):
self.data.definition  =  content		 def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content


Clone # 641
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1022		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  size(self,  content):
self.data.size  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  title(self,  content):
self._cur_reference.title  =  content


Clone # 642
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1028		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  segment(self,  content):
self.data.segment  =  content
def  date(self,  content):
self.data.date  =  content		 def  source(self,  content):
self.data.source  =  content
def  definition(self,  content):
self.data.definition  =  content		 def  organism(self,  content):
self.data.organism  =  content


Clone # 643
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041
def  locus(self,  content):
self.data.locus  =  content		 def  nid(self,  content):
self.data.nid  =  content
def  size(self,  content):
self.data.size  =  content		 def  pid(self,  content):
self.data.pid  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  version(self,  content):
self.data.version  =  content


Clone # 644
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555
def  locus(self,  content):
self.data.locus  =  content		 def  authors(self,  content):
self._current_ref.authors  =  content
def  size(self,  content):
self.data.size  =  content		 def  consrtm(self,  content):
self._current_ref.consrtm  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  title(self,  content):
self._current_ref.title  =  content


Clone # 645
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1028		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 564
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  journal(self,  content):
self._current_ref.journal  =  content
def  date(self,  content):
self.data.date  =  content		 def  medline_id(self,  content):
self._current_ref.medline_id  =  content
def  definition(self,  content):
self.data.definition  =  content		 def  pubmed_id(self,  content):
self._current_ref.pubmed_id  =  content


Clone # 646
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1087
def  segment(self,  content):
self.data.segment  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  source(self,  content):
self.data.source  =  content		 def  title(self,  content):
self._cur_reference.title  =  content
def  organism(self,  content):
self.data.organism  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content


Clone # 647
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 561
def  segment(self,  content):
self.data.segment  =  content		 def  title(self,  content):
self._current_ref.title  =  content
def  source(self,  content):
self.data.source  =  content		 def  journal(self,  content):
self._current_ref.journal  =  content
def  organism(self,  content):
self.data.organism  =  content		 def  medline_id(self,  content):
self._current_ref.medline_id  =  content


Clone # 648
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1087		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041
def  consrtm(self,  content):
self._cur_reference.consrtm  =  content		 def  nid(self,  content):
self.data.nid  =  content
def  title(self,  content):
self._cur_reference.title  =  content		 def  pid(self,  content):
self.data.pid  =  content
def  journal(self,  content):
self._cur_reference.journal  =  content		 def  version(self,  content):
self.data.version  =  content


Clone # 649
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1087		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555
def  consrtm(self,  content):
self._cur_reference.consrtm  =  content		 def  authors(self,  content):
self._current_ref.authors  =  content
def  title(self,  content):
self._cur_reference.title  =  content		 def  consrtm(self,  content):
self._current_ref.consrtm  =  content
def  journal(self,  content):
self._cur_reference.journal  =  content		 def  title(self,  content):
self._current_ref.title  =  content


Clone # 650
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1096		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 564
def  medline_id(self,  content):
self._cur_reference.medline_id  =  content		 def  journal(self,  content):
self._current_ref.journal  =  content
def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content		 def  medline_id(self,  content):
self._current_ref.medline_id  =  content
def  remark(self,  content):
self._cur_reference.remark  =  content		 def  pubmed_id(self,  content):
self._current_ref.pubmed_id  =  content


Clone # 651
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 564		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  journal(self,  content):
self._current_ref.journal  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  medline_id(self,  content):
self._current_ref.medline_id  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  pubmed_id(self,  content):
self._current_ref.pubmed_id  =  content		 def  title(self,  content):
self._cur_reference.title  =  content


Clone # 652
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 561		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041
def  title(self,  content):
self._current_ref.title  =  content		 def  nid(self,  content):
self.data.nid  =  content
def  journal(self,  content):
self._current_ref.journal  =  content		 def  pid(self,  content):
self.data.pid  =  content
def  medline_id(self,  content):
self._current_ref.medline_id  =  content		 def  version(self,  content):
self.data.version  =  content


Clone # 653
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 561		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019
def  title(self,  content):
self._current_ref.title  =  content		 def  locus(self,  content):
self.data.locus  =  content
def  journal(self,  content):
self._current_ref.journal  =  content		 def  size(self,  content):
self.data.size  =  content
def  medline_id(self,  content):
self._current_ref.medline_id  =  content		 def  residue_type(self,  content):
self.data.residue_type  =  content


Clone # 654
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1025		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  date(self,  content):
self.data.date  =  content		 def  title(self,  content):
self._cur_reference.title  =  content


Clone # 655
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1022		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041
def  size(self,  content):
self.data.size  =  content		 def  nid(self,  content):
self.data.nid  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  pid(self,  content):
self.data.pid  =  content
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  version(self,  content):
self.data.version  =  content


Clone # 656
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1022		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555
def  size(self,  content):
self.data.size  =  content		 def  authors(self,  content):
self._current_ref.authors  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  consrtm(self,  content):
self._current_ref.consrtm  =  content
def  data_file_division(self,  content):
self.data.data_file_division  =  content		 def  title(self,  content):
self._current_ref.title  =  content


Clone # 657
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084
def  segment(self,  content):
self.data.segment  =  content		 def  authors(self,  content):
self._cur_reference.authors  =  content
def  source(self,  content):
self.data.source  =  content		 def  consrtm(self,  content):
self._cur_reference.consrtm  =  content
def  organism(self,  content):
self.data.organism  =  content		 def  title(self,  content):
self._cur_reference.title  =  content


Clone # 658
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1022
def  segment(self,  content):
self.data.segment  =  content		 def  size(self,  content):
self.data.size  =  content
def  source(self,  content):
self.data.source  =  content		 def  residue_type(self,  content):
self.data.residue_type  =  content
def  organism(self,  content):
self.data.organism  =  content		 def  data_file_division(self,  content):
self.data.data_file_division  =  content


Clone # 659
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 558
def  segment(self,  content):
self.data.segment  =  content		 def  consrtm(self,  content):
self._current_ref.consrtm  =  content
def  source(self,  content):
self.data.source  =  content		 def  title(self,  content):
self._current_ref.title  =  content
def  organism(self,  content):
self.data.organism  =  content		 def  journal(self,  content):
self._current_ref.journal  =  content


Clone # 660
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1090		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041
def  title(self,  content):
self._cur_reference.title  =  content		 def  nid(self,  content):
self.data.nid  =  content
def  journal(self,  content):
self._cur_reference.journal  =  content		 def  pid(self,  content):
self.data.pid  =  content
def  medline_id(self,  content):
self._cur_reference.medline_id  =  content		 def  version(self,  content):
self.data.version  =  content


Clone # 661
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1090		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019
def  title(self,  content):
self._cur_reference.title  =  content		 def  locus(self,  content):
self.data.locus  =  content
def  journal(self,  content):
self._cur_reference.journal  =  content		 def  size(self,  content):
self.data.size  =  content
def  medline_id(self,  content):
self._cur_reference.medline_id  =  content		 def  residue_type(self,  content):
self.data.residue_type  =  content


Clone # 662
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1090		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555
def  title(self,  content):
self._cur_reference.title  =  content		 def  authors(self,  content):
self._current_ref.authors  =  content
def  journal(self,  content):
self._cur_reference.journal  =  content		 def  consrtm(self,  content):
self._current_ref.consrtm  =  content
def  medline_id(self,  content):
self._cur_reference.medline_id  =  content		 def  title(self,  content):
self._current_ref.title  =  content


Clone # 663
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1084		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1028
def  authors(self,  content):
self._cur_reference.authors  =  content		 def  data_file_division(self,  content):
self.data.data_file_division  =  content
def  consrtm(self,  content):
self._cur_reference.consrtm  =  content		 def  date(self,  content):
self.data.date  =  content
def  title(self,  content):
self._cur_reference.title  =  content		 def  definition(self,  content):
self.data.definition  =  content


Clone # 664
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1025
def  nid(self,  content):
self.data.nid  =  content		 def  residue_type(self,  content):
self.data.residue_type  =  content
def  pid(self,  content):
self.data.pid  =  content		 def  data_file_division(self,  content):
self.data.data_file_division  =  content
def  version(self,  content):
self.data.version  =  content		 def  date(self,  content):
self.data.date  =  content


Clone # 665
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1025
def  authors(self,  content):
self._current_ref.authors  =  content		 def  residue_type(self,  content):
self.data.residue_type  =  content
def  consrtm(self,  content):
self._current_ref.consrtm  =  content		 def  data_file_division(self,  content):
self.data.data_file_division  =  content
def  title(self,  content):
self._current_ref.title  =  content		 def  date(self,  content):
self.data.date  =  content


Clone # 666
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059
def  nid(self,  content):
self.data.nid  =  content		 def  segment(self,  content):
self.data.segment  =  content
def  pid(self,  content):
self.data.pid  =  content		 def  source(self,  content):
self.data.source  =  content
def  version(self,  content):
self.data.version  =  content		 def  organism(self,  content):
self.data.organism  =  content


Clone # 667
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059
def  locus(self,  content):
self.data.locus  =  content		 def  segment(self,  content):
self.data.segment  =  content
def  size(self,  content):
self.data.size  =  content		 def  source(self,  content):
self.data.source  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  organism(self,  content):
self.data.organism  =  content


Clone # 668
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1059
def  authors(self,  content):
self._current_ref.authors  =  content		 def  segment(self,  content):
self.data.segment  =  content
def  consrtm(self,  content):
self._current_ref.consrtm  =  content		 def  source(self,  content):
self.data.source  =  content
def  title(self,  content):
self._current_ref.title  =  content		 def  organism(self,  content):
self.data.organism  =  content


Clone # 669
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 564
def  nid(self,  content):
self.data.nid  =  content		 def  journal(self,  content):
self._current_ref.journal  =  content
def  pid(self,  content):
self.data.pid  =  content		 def  medline_id(self,  content):
self._current_ref.medline_id  =  content
def  version(self,  content):
self.data.version  =  content		 def  pubmed_id(self,  content):
self._current_ref.pubmed_id  =  content


Clone # 670
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 564
def  locus(self,  content):
self.data.locus  =  content		 def  journal(self,  content):
self._current_ref.journal  =  content
def  size(self,  content):
self.data.size  =  content		 def  medline_id(self,  content):
self._current_ref.medline_id  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  pubmed_id(self,  content):
self._current_ref.pubmed_id  =  content


Clone # 671
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 564
def  authors(self,  content):
self._current_ref.authors  =  content		 def  journal(self,  content):
self._current_ref.journal  =  content
def  consrtm(self,  content):
self._current_ref.consrtm  =  content		 def  medline_id(self,  content):
self._current_ref.medline_id  =  content
def  title(self,  content):
self._current_ref.title  =  content		 def  pubmed_id(self,  content):
self._current_ref.pubmed_id  =  content


Clone # 672
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1041		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1093
def  nid(self,  content):
self.data.nid  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content
def  pid(self,  content):
self.data.pid  =  content		 def  medline_id(self,  content):
self._cur_reference.medline_id  =  content
def  version(self,  content):
self.data.version  =  content		 def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content


Clone # 673
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1019		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1093
def  locus(self,  content):
self.data.locus  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content
def  size(self,  content):
self.data.size  =  content		 def  medline_id(self,  content):
self._cur_reference.medline_id  =  content
def  residue_type(self,  content):
self.data.residue_type  =  content		 def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content


Clone # 674
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 555		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1093
def  authors(self,  content):
self._current_ref.authors  =  content		 def  journal(self,  content):
self._cur_reference.journal  =  content
def  consrtm(self,  content):
self._current_ref.consrtm  =  content		 def  medline_id(self,  content):
self._cur_reference.medline_id  =  content
def  title(self,  content):
self._current_ref.title  =  content		 def  pubmed_id(self,  content):
self._cur_reference.pubmed_id  =  content


Clone # 675
Anti-unification distance between two trees = 3
Total size of two trees = 42
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 212		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 199
def  hit_alignment(self,line):
m  =  self.__class__._re_start.search(line)
if  m:
self.data.hit_start  =  int(m.group(1))
m  =  self.__class__._re_align.match(line)
assert  m!=None,  "invalid  match"
self.data.hit_aln  =  self.data.hit_aln  +  m.group(1)		 def  query_alignment(self,  line):
m  =  self.__class__._re_start.search(line)
if  m:
self.data.query_start  =  int(m.group(1))
m  =  self.__class__._re_align.match(line)
assert  m!=None,  "invalid  match"
self.data.query_aln  =  self.data.query_aln  +  m.group(1)


Clone # 676
Anti-unification distance between two trees = 4
Total size of two trees = 42
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Ace.py"
The first line is 536		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Ace.py"
The first line is 574
def  rt_start(self,line):
if  not  line.strip().endswith('{'):
raise  SyntaxError,  'RT  tag  does  not  start  with  RT{'
rtdata=rt()
if  self.data.reads[-1].rt  is  None:
self.data.reads[-1].rt=[]
self.data.reads[-1].rt.append(rtdata)		 def  wr_start(self,line):
if  not  line.strip().endswith('{'):
raise  SyntaxError,  'WR  tag  does  not  start  with  WR{'
wrdata=wr()
if  self.data.reads[-1].wr  is  None:
self.data.reads[-1].wr=[]
self.data.reads[-1].wr.append(wrdata)


Clone # 677
Anti-unification distance between two trees = 1
Total size of two trees = 42
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/Comparative.py"
The first line is 77		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/Distribution.py"
The first line is 81
def  _draw_title(self,  cur_drawing,  title,  width,  height):
title_string  =  String(width  /  2,  height  -  inch,  title)
title_string.fontName  =  'Helvetica-Bold'
title_string.fontSize  =  self.title_size
title_string.textAnchor  =  "middle"
cur_drawing.add(title_string)		 def  _draw_title(self,  cur_drawing,  title,  width,  height):
title_string  =  String(width  /  2,  height  -  inch,  title)
title_string.fontName  =  'Helvetica-Bold'
title_string.fontSize  =  self.title_size
title_string.textAnchor  =  "middle"
cur_drawing.add(title_string)


Clone # 678
Anti-unification distance between two trees = 1
Total size of two trees = 42
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/Comparative.py"
The first line is 77		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/BasicChromosome.py"
The first line is 157
def  _draw_title(self,  cur_drawing,  title,  width,  height):
title_string  =  String(width  /  2,  height  -  inch,  title)
title_string.fontName  =  'Helvetica-Bold'
title_string.fontSize  =  self.title_size
title_string.textAnchor  =  "middle"
cur_drawing.add(title_string)		 def  _draw_title(self,  cur_drawing,  title,  width,  height):
title_string  =  String(width  /  2,  height  -  inch,  title)
title_string.fontName  =  'Helvetica-Bold'
title_string.fontSize  =  self.title_size
title_string.textAnchor  =  "middle"
cur_drawing.add(title_string)


Clone # 679
Anti-unification distance between two trees = 1
Total size of two trees = 42
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/Distribution.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Graphics/BasicChromosome.py"
The first line is 157
def  _draw_title(self,  cur_drawing,  title,  width,  height):
title_string  =  String(width  /  2,  height  -  inch,  title)
title_string.fontName  =  'Helvetica-Bold'
title_string.fontSize  =  self.title_size
title_string.textAnchor  =  "middle"
cur_drawing.add(title_string)		 def  _draw_title(self,  cur_drawing,  title,  width,  height):
title_string  =  String(width  /  2,  height  -  inch,  title)
title_string.fontName  =  'Helvetica-Bold'
title_string.fontSize  =  self.title_size
title_string.textAnchor  =  "middle"
cur_drawing.add(title_string)


Clone # 680
Anti-unification distance between two trees = 2
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 4		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 4
import  Bio.EUtils.POM import  Bio.EUtils.POM
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 681
Anti-unification distance between two trees = 2
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 4		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 4
import  Bio.EUtils.POM import  Bio.EUtils.POM
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 682
Anti-unification distance between two trees = 2
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 4		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 4
import  Bio.EUtils.POM import  Bio.EUtils.POM
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 683
Anti-unification distance between two trees = 2
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 4		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 4
import  Bio.EUtils.POM import  Bio.EUtils.POM
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 684
Anti-unification distance between two trees = 2
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 4		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 4
import  Bio.EUtils.POM import  Bio.EUtils.POM
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 685
Anti-unification distance between two trees = 2
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 4		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 4
import  Bio.EUtils.POM import  Bio.EUtils.POM
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 686
Anti-unification distance between two trees = 2
Total size of two trees = 42
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 4		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 4
import  Bio.EUtils.POM import  Bio.EUtils.POM
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 687
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 688
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 689
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 690
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 691
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 692
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 693
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 694
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 695
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 696
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 697
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))


Clone # 698
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))


Clone # 699
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 700
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 701
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 702
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 703
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 704
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 705
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))


Clone # 706
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))


Clone # 707
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))


Clone # 708
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 709
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 710
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 711
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 712
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 713
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 714
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 715
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 716
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 717
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 718
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 719
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 720
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 721
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 722
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 723
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 724
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 725
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 726
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 727
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'DbName',  u'+')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 728
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 729
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 730
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 731
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 732
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 733
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 734
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 735
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 736
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 737
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 738
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 739
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 740
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 741
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 742
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 743
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 744
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 745
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 746
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 747
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 748
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 749
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 750
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 751
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 752
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 753
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 754
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 755
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 756
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 757
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 758
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 759
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 760
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 761
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 762
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 763
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 764
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 765
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 766
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 767
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 768
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 769
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 770
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 259		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Brief(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkSet(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Link',  u'+')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 771
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 772
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 773
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 774
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 775
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 776
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 777
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 778
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 779
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 780
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  InvalidIdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 781
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))


Clone # 782
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 783
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 784
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 785
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 786
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 787
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 788
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 42		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IdList(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [(u'Id',  u'*')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 789
Anti-unification distance between two trees = 3
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/web_parse.py"
The first line is 161		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/__init__.py"
The first line is 19
def  __init__(  self  ):
dict.__init__(  self  )		 def  __init__(  self  ):
dict.__init__(  self  )
def  __str__(  self  ):
queue_keys  =  self.keys()
queue_keys.sort()
out  =  ''
for  key  in  queue_keys:
out  =  out  +    '%s:\n'  %  key.upper()
out  =  out  +  self.print_item(  self[  key  ]  )
out  =  out  +  '\n'
return  out		 def  __str__(  self  ):
queue_keys  =  self.keys()
queue_keys.sort()
out  =  ''
for  key  in  queue_keys:
out  =  out  +    '%s:\n'  %  key
out  =  out  +  self.print_item(  self[  key  ]  )
out  =  out  +  '\n'
return  out


Clone # 790
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1237		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1229
def  num_sequences(self,  line):
if  line.find('1st  pass')  !=  -1:
x,  =  _get_cols(line,  (-4,),  ncols=9,  expected={2:"Sequences:"})
self._params.num_sequences  =  _safe_int(x)
x,  =  _get_cols(line,  (-1,),  ncols=4,  expected={2:"Sequences:"})
self._params.num_sequences  =  _safe_int(x)		 def  num_hits(self,  line):
if  line.find('1st  pass')  !=  -1:
x,  =  _get_cols(line,  (-4,),  ncols=11,  expected={2:"Hits"})
self._params.num_hits  =  _safe_int(x)
x,  =  _get_cols(line,  (-1,),  ncols=6,  expected={2:"Hits"})
self._params.num_hits  =  _safe_int(x)


Clone # 791
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1253		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1245
def  num_good_extends(self,  line):
if  line.find('1st  pass')  !=  -1:
x,  =  _get_cols(line,  (-4,),  ncols=10,  expected={3:"extensions:"})
self._params.num_good_extends  =  _safe_int(x)
x,  =  _get_cols(line,  (-1,),  ncols=5,  expected={3:"extensions:"})
self._params.num_good_extends  =  _safe_int(x)		 def  num_extends(self,  line):
if  line.find('1st  pass')  !=  -1:
x,  =  _get_cols(line,  (-4,),  ncols=9,  expected={2:"extensions:"})
self._params.num_extends  =  _safe_int(x)
x,  =  _get_cols(line,  (-1,),  ncols=4,  expected={2:"extensions:"})
self._params.num_extends  =  _safe_int(x)


Clone # 792
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1245		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1229
def  num_extends(self,  line):
if  line.find('1st  pass')  !=  -1:
x,  =  _get_cols(line,  (-4,),  ncols=9,  expected={2:"extensions:"})
self._params.num_extends  =  _safe_int(x)
x,  =  _get_cols(line,  (-1,),  ncols=4,  expected={2:"extensions:"})
self._params.num_extends  =  _safe_int(x)		 def  num_hits(self,  line):
if  line.find('1st  pass')  !=  -1:
x,  =  _get_cols(line,  (-4,),  ncols=11,  expected={2:"Hits"})
self._params.num_hits  =  _safe_int(x)
x,  =  _get_cols(line,  (-1,),  ncols=6,  expected={2:"Hits"})
self._params.num_hits  =  _safe_int(x)


Clone # 793
Anti-unification distance between two trees = 4
Total size of two trees = 41
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 97		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Compound/__init__.py"
The first line is 71
def  _entry(self):
return  _write_kegg("ENTRY",
["EC  "  +  self.entry])		 def  _entry(self):
return  _write_kegg("ENTRY",
[self.entry])
def  _name(self):
return  _write_kegg("NAME",
map(lambda  l:
_wrap_kegg(l,  wrap_rule  =  name_wrap),
self.name))		 def  _name(self):
return  _write_kegg("NAME",
map(lambda  l:
_wrap_kegg(l,  wrap_rule  =  name_wrap),
self.name))


Clone # 794
Anti-unification distance between two trees = 0
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Fasta/__init__.py"
The first line is 200		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 103
try:
seqs  =  self._index.lookup(id  =  key)
except  KeyError:
seqs  =  self._index.lookup(aliases  =  key)		 try:
seqs  =  self._index.lookup(id  =  key)
except  KeyError:
seqs  =  self._index.lookup(aliases  =  key)
if  len(seqs)  ==  1:
seq  =  seqs[0]
raise  KeyError("Multiple  sequences  found  for  %s"  %  key)		 if  len(seqs)  ==  1:
seq  =  seqs[0]
raise  KeyError("Multiple  sequences  found  for  %s"  %  key)


Clone # 795
Anti-unification distance between two trees = 0
Total size of two trees = 40
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/config/DBRegistry.py"
The first line is 590		Source file "/home/peter/clone_digger/biopython-1.44/Bio/config/DBRegistry.py"
The first line is 257
def  _convert_to(self,  handle,  to_io):
from  Bio  import  FormatIO
x  =  to_io.read(handle)
if  isinstance(x,  FormatIO.FormatIOIterator):
i  =  0
for  rec  in  x:
if  i  >  0:
raise  AssertionError,  "Multiple  records  returned"
i  +=  1
rec  =  x
return  rec		 def  _convert_to(self,  handle,  to_io):
from  Bio  import  FormatIO
x  =  to_io.read(handle)
if  isinstance(x,  FormatIO.FormatIOIterator):
i  =  0
for  rec  in  x:
if  i  >  0:
raise  AssertionError,  "Multiple  records  returned"
i  +=  1
rec  =  x
return  rec


Clone # 796
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 797
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 798
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 799
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 800
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 801
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 802
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 803
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 804
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 805
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 806
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 807
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 808
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 809
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 810
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 811
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 812
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 813
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 814
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 815
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 816
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 817
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 818
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 819
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 820
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 821
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 822
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 823
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 824
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 825
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 826
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 827
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 828
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 829
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 830
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 831
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 832
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 833
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 834
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 835
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 836
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 837
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 838
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 839
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 840
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 841
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 842
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 843
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 844
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 845
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 846
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 847
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 848
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 849
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 850
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 851
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 852
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 853
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 854
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 855
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 856
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 857
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 858
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 859
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 860
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 861
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 862
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 863
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 864
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 865
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 866
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 867
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 868
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 869
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  QueryTranslation(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 870
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 871
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 872
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 873
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 874
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 875
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 876
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 877
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 878
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 879
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 880
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 881
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 882
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 883
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 884
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 885
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 886
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 887
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 888
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 889
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 890
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 891
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 892
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 893
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 894
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 895
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 896
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 897
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 898
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 899
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 900
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 901
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 902
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 903
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 904
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 905
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 906
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 907
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 908
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Query(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ObjId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 909
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 910
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 911
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 912
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 913
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 914
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 915
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 916
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 917
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 81		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 918
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 919
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 920
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 921
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 922
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 923
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 924
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 925
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 926
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 927
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 928
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 929
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 930
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 931
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 932
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 933
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 934
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 935
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 936
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 937
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 938
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 939
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 940
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 941
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 942
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 943
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 944
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 945
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 946
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 947
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 948
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 949
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 950
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 951
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 952
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 953
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 954
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 955
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 956
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 957
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 958
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 959
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 309		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  InclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  ExclQuery(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 960
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 961
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 962
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 11
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 963
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 11
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 964
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 965
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 966
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 967
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 241		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 12
class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  NameAbbr(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 968
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 969
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 970
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 971
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 972
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 973
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 974
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 975
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 976
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 977
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 978
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 979
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 980
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 981
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 982
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 983
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 984
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 985
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 986
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 987
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 988
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 989
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 990
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 991
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 992
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 993
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 994
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 995
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 996
Anti-unification distance between two trees = 0
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 997
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 998
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 999
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1000
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1001
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1002
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1003
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 138		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17
class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1004
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 112
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1005
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 107
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  FieldNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1006
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 102
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  PhraseIgnored(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1007
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 97
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QuotedPhraseNotFound(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1008
Anti-unification distance between two trees = 1
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 92
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OutputMessage(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1009
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 61
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  OP(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1010
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 56
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Explode(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1011
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 51
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1012
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 46
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  QueryKey(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1013
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 41
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Field(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1014
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 36
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Term(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1015
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 31
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  To(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1016
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 26
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  From(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1017
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 21
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1018
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eSearch_020511.py"
The first line is 16
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetMax(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  RetStart(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1019
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 66
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Hierarchy(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1020
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 61
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SingleToken(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1021
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 56
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsNumerical(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1022
Anti-unification distance between two trees = 1
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 51
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IsDate(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1023
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 46
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1024
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 41
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Count(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1025
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 36
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  MenuName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1026
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 31
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1027
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 26
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Menu(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1028
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 21
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  TermCount(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1029
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eInfo_020511.py"
The first line is 16
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Descriptor(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1030
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 237
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ProviderId(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1031
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 76
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Name(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1032
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 71
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Attribute(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1033
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 66
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  SubjectType(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1034
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 61
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Url(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  IconUrl(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1035
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 37
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  LinkName(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1036
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 32
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbTo(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1037
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 27
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Score(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  DbFrom(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1038
Anti-unification distance between two trees = 1
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 22
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  Id(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1039
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/eLink_020511.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/ePost_020511.py"
The first line is 17
class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  WebEnv(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))
class  Info(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))		 class  ERROR(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('',  [('#PCDATA',  '')],  ''))


Clone # 1040
Anti-unification distance between two trees = 4
Total size of two trees = 40
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/InterPro/__init__.py"
The first line is 63		Source file "/home/peter/clone_digger/biopython-1.44/Bio/InterPro/__init__.py"
The first line is 62
self.inter_pro_dict[  'Accession'  ]  =  '' self.inter_pro_dict[  'Database'  ]  =  ''
self.inter_pro_dict[  'Name'  ]  =  '' self.inter_pro_dict[  'Accession'  ]  =  ''
self.inter_pro_dict[  'Dates'  ]  =  '' self.inter_pro_dict[  'Name'  ]  =  ''
self.inter_pro_dict[  'Type'  ]  =  '' self.inter_pro_dict[  'Dates'  ]  =  ''


Clone # 1041
Anti-unification distance between two trees = 4
Total size of two trees = 40
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/InterPro/__init__.py"
The first line is 67		Source file "/home/peter/clone_digger/biopython-1.44/Bio/InterPro/__init__.py"
The first line is 66
self.inter_pro_dict[  'Parent'  ]  =  '' self.inter_pro_dict[  'Type'  ]  =  ''
self.inter_pro_dict[  'Process'  ]  =  '' self.inter_pro_dict[  'Parent'  ]  =  ''
self.inter_pro_dict[  'Function'  ]  =  '' self.inter_pro_dict[  'Process'  ]  =  ''
self.inter_pro_dict[  'Component'  ]  =  '' self.inter_pro_dict[  'Function'  ]  =  ''


Clone # 1042
Anti-unification distance between two trees = 0
Total size of two trees = 40
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqIO/generic.py"
The first line is 168		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqIO/generic.py"
The first line is 134
def  write(self,  record):
id  =  record.id
description  =  record.description
self.outstream.write(">%s  %s%s"  %  (id,  description,os.linesep))
data  =  record.seq.tostring()
for  i  in  range(0,  len(data),  60):
self.outstream.write(data[i:i+60]  +  os.linesep)		 def  write(self,  record):
id  =  record.id
description  =  record.description
self.outstream.write(">%s  %s%s"  %  (id,  description,os.linesep))
data  =  record.seq.tostring()
for  i  in  range(0,  len(data),  60):
self.outstream.write(data[i:i+60]  +  os.linesep)


Clone # 1043
Anti-unification distance between two trees = 4
Total size of two trees = 40
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/__init__.py"
The first line is 316		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SCOP/__init__.py"
The first line is 295
def  write_cla(self,  handle)  :
nodes  =  self._sidDict.values()
nodes.sort(lambda  n1,n2:  cmp(n1.sunid,  n2.sunid))
for  n  in  nodes  :
handle.write(str(n.toClaRecord()))		 def  write_hie(self,  handle)  :
nodes  =  self._sunidDict.values()
nodes.sort(lambda  n1,n2:  cmp(n1.sunid,  n2.sunid))
for  n  in  nodes  :
handle.write(str(n.toHieRecord()))


Clone # 1044
Anti-unification distance between two trees = 4
Total size of two trees = 40
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 84		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 85
description_contents_line  =  AssertNot(  has_tag  )  +  ToEol() status_contents_line  =  AssertNot(  has_tag  )  +  ToEol()
status_contents_line  =  AssertNot(  has_tag  )  +  ToEol() source_contents_line  =  AssertNot(  has_tag  )  +  ToEol()
source_contents_line  =  AssertNot(  has_tag  )  +  ToEol() date_contents_line  =  AssertNot(  has_tag  )  +  ToEol()
date_contents_line  =  AssertNot(  has_tag  )  +  ToEol() reference_contents_line  =  AssertNot(  has_tag  )  +  ToEol()


Clone # 1045
Anti-unification distance between two trees = 4
Total size of two trees = 40
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 88		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 89
reference_contents_line  =  AssertNot(  has_tag  )  +  ToEol() taxonomy_contents_line  =  AssertNot(  has_tag  )  +  ToEol()
taxonomy_contents_line  =  AssertNot(  has_tag  )  +  ToEol() aligned_contents_line  =  AssertNot(  has_tag  )  +  ToEol()
aligned_contents_line  =  AssertNot(  has_tag  )  +  ToEol() representative_contents_line  =  AssertNot(  has_tag  )  +  ToEol()
representative_contents_line  =  AssertNot(  has_tag  )  +  ToEol() range_contents_line  =  AssertNot(  has_tag  )  +  ToEol()


Clone # 1046
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1245		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1237
def  num_extends(self,  line):
if  line.find('1st  pass')  !=  -1:
x,  =  _get_cols(line,  (-4,),  ncols=9,  expected={2:"extensions:"})
self._params.num_extends  =  _safe_int(x)
x,  =  _get_cols(line,  (-1,),  ncols=4,  expected={2:"extensions:"})
self._params.num_extends  =  _safe_int(x)		 def  num_sequences(self,  line):
if  line.find('1st  pass')  !=  -1:
x,  =  _get_cols(line,  (-4,),  ncols=9,  expected={2:"Sequences:"})
self._params.num_sequences  =  _safe_int(x)
x,  =  _get_cols(line,  (-1,),  ncols=4,  expected={2:"Sequences:"})
self._params.num_sequences  =  _safe_int(x)


Clone # 1047
Anti-unification distance between two trees = 2
Total size of two trees = 40
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 108		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Translate.py"
The first line is 101
ambiguous_rna_by_name  =  {} ambiguous_dna_by_name  =  {}
for  key,  value  in  CodonTable.ambiguous_rna_by_name.items():
ambiguous_rna_by_name[key]  =  Translator(value)		 for  key,  value  in  CodonTable.ambiguous_dna_by_name.items():
ambiguous_dna_by_name[key]  =  Translator(value)
ambiguous_rna_by_id  =  {} ambiguous_dna_by_id  =  {}
for  key,  value  in  CodonTable.ambiguous_rna_by_id.items():
ambiguous_rna_by_id[key]  =  Translator(value)		 for  key,  value  in  CodonTable.ambiguous_dna_by_id.items():
ambiguous_dna_by_id[key]  =  Translator(value)


Clone # 1048
Anti-unification distance between two trees = 4
Total size of two trees = 40
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 291		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 294
next_item  =  self._scan_field(  text,  'Partial  gene:',  'Pseudo:'  ) next_item  =  self._scan_field(  text,  'Pseudo:',  'Transpliced  gene:'  )
data.is_partial_gene  =  consumer.text_field(  next_item  ) data.is_pseudo_gene  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Pseudo:',  'Transpliced  gene:'  ) next_item  =  self._scan_field(  text,  'Transpliced  gene:',  'Chloroplast  origin:'  )


Clone # 1049
Anti-unification distance between two trees = 4
Total size of two trees = 40
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 276		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 297
next_item  =  self._scan_field(  text,  'NCBI  Entrez  record:',  'Genbank  accession:'  ) next_item  =  self._scan_field(  text,  'Transpliced  gene:',  'Chloroplast  origin:'  )
data.entrez_record  =  consumer.text_field(  next_item  ) data.is_transpliced_gene  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Genbank  accession:',  'Coding  gene(s):'  ) next_item  =  self._scan_field(  text,  'Chloroplast  origin:',  'Contains  intron(s):'  )


Clone # 1050
Anti-unification distance between two trees = 4
Total size of two trees = 40
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 291		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 276
next_item  =  self._scan_field(  text,  'Partial  gene:',  'Pseudo:'  ) next_item  =  self._scan_field(  text,  'NCBI  Entrez &nbsp;record:',  'Genbank &nbsp;accession:'  )
data.is_partial_gene  =  consumer.text_field(  next_item  ) data.entrez_record  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Pseudo:',  'Transpliced  gene:'  ) next_item  =  self._scan_field(  text,  'Genbank &nbsp;accession:',  'Coding  gene(s):'  )


Clone # 1051
Anti-unification distance between two trees = 4
Total size of two trees = 40
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 291		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 331
next_item  =  self._scan_field(  text,  'Partial  gene:',  'Pseudo:'  ) next_item  =  self._scan_field(  text,  'Gene  Class:',  'Partial  protein:'  )
data.is_partial_gene  =  consumer.text_field(  next_item  ) data.gene_class  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Pseudo:',  'Transpliced  gene:'  ) next_item  =  self._scan_field(  text,  'Partial &nbsp;protein:',  'Conflict:'  )


Clone # 1052
Anti-unification distance between two trees = 4
Total size of two trees = 40
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 291		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 297
next_item  =  self._scan_field(  text,  'Partial  gene:',  'Pseudo:'  ) next_item  =  self._scan_field(  text,  'Transpliced  gene:',  'Chloroplast  origin:'  )
data.is_partial_gene  =  consumer.text_field(  next_item  ) data.is_transpliced_gene  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Pseudo:',  'Transpliced  gene:'  ) next_item  =  self._scan_field(  text,  'Chloroplast  origin:',  'Contains  intron(s):'  )


Clone # 1053
Anti-unification distance between two trees = 3
Total size of two trees = 40
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 285		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 331
next_item  =  self._scan_field(  text,  'Gene  Class:',  'Species  name:'  ) next_item  =  self._scan_field(  text,  'Gene  Class:',  'Partial  protein:'  )
data.gene_class  =  consumer.text_field(  next_item  ) data.gene_class  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Plasmid  encoded:',  'Partial  gene:'  ) next_item  =  self._scan_field(  text,  'Partial  protein:',  'Conflict:'  )


Clone # 1054
Anti-unification distance between two trees = 2
Total size of two trees = 39
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqIO/ClustalIO.py"
The first line is 65		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqIO/ClustalIO.py"
The first line is 106
if  len(fields)  ==  3  :
try  :
letters  =  int(fields[2])
except  ValueError  :
raise  SyntaxError("Could  not  parse  line,  bad  sequence  number:\n%s"  %  line)
if  len(fields[1].replace("-",""))  <>  letters  :
raise  SyntaxError("Could  not  parse  line,  invalid  sequence  number:\n%s"  %  line)		 if  len(fields)  ==  3  :
try  :
letters  =  int(fields[2])
except  ValueError  :
raise  SyntaxError("Could  not  parse  line,  bad  sequence  number:\n%s"  %  line)
if  len(seqs[i].replace("-",""))  <>  letters  :
raise  SyntaxError("Could  not  parse  line,  invalid  sequence  number:\n%s"  %  line)


Clone # 1055
Anti-unification distance between two trees = 1
Total size of two trees = 39
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/CheckSum.py"
The first line is 32		Source file "/home/peter/clone_digger/biopython-1.44/Bio/crc.py"
The first line is 12
def  crc64(s):
crcl  =  0
crch  =  0
for  c  in  s:
shr  =  (crch  &  0xFF)  <<  24
temp1h  =  crch  >>  8
temp1l  =  (crcl  >>  8)  |  shr
idx    =  (crcl  ^  ord(c))  &  0xFF
crch  =  temp1h  ^  _table_h[idx]
crcl  =  temp1l
return  "CRC-%08X%08X"  %  (crch,  crcl)		 def  crc64(s):
crcl  =  0
crch  =  0
for  c  in  s:
shr  =  (crch  &  0xFF)  <<  24
temp1h  =  crch  >>  8
temp1l  =  (crcl  >>  8)  |  shr
idx    =  (crcl  ^  ord(c))  &  0xFF
crch  =  temp1h  ^  _table_h[idx]
crcl  =  temp1l
return  "CRC-%08X%08X"  %  (crch,  crcl)


Clone # 1056
Anti-unification distance between two trees = 1
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 391		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 379
class  Rule(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))		 class  normalize(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))


Clone # 1057
Anti-unification distance between two trees = 1
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 391		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 362
class  Rule(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))		 class  toupper(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))


Clone # 1058
Anti-unification distance between two trees = 1
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 367		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 379
class  tolower(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))		 class  normalize(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))


Clone # 1059
Anti-unification distance between two trees = 1
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 367		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/DTDs/LinkOut.py"
The first line is 362
class  tolower(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))		 class  toupper(Bio.EUtils.POM.ElementNode):
CONTENTMODEL  =  Bio.EUtils.POM.ContentModel(('|',  [('#PCDATA',  ''),  (u'pad',  ''),  (u'apad',  ''),  (u'subs',  ''),  (u'toupper',  ''),  (u'tolower',  ''),  (u'strip',  ''),  (u'normalize',  '')],  '*'))


Clone # 1060
Anti-unification distance between two trees = 1
Total size of two trees = 38
Total length of sequences = 14
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_011101_format.py"
The first line is 241		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/nlmmedline_031101_format.py"
The first line is 253
simple_elem("NumberOfReferences") simple_elem("NumberOfReferences")
group_elem("PersonalNameSubject",  personal_name) group_elem("PersonalNameSubject",  personal_name)
group_elem("PersonalNameSubjectList",  Rep1(PersonalNameSubject)) group_elem("PersonalNameSubjectList",  Rep1(PersonalNameSubject))
simple_elem("GeneSymbol") simple_elem("GeneSymbol")
group_elem("GeneSymbolList",  Rep1(GeneSymbol)) group_elem("GeneSymbolList",  Rep1(GeneSymbol))
simple_elem("NameOfSubstance") simple_elem("NameOfSubstance")
simple_elem("CASRegistryNumber") simple_elem("RegistryNumber")


Clone # 1061
Anti-unification distance between two trees = 0
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/crc.py"
The first line is 26		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/CheckSum.py"
The first line is 17
for  i  in  range(256):
l  =  i
part_h  =  0
for  j  in  range(8):
rflag  =  l  &  1
l  >>=  1
if  part_h  &  1:  l  |=  (1L  <<  31)
part_h  >>=  1L
if  rflag:  part_h  ^=  0xd8000000L
_table_h.append(part_h)		 for  i  in  range(256):
l  =  i
part_h  =  0
for  j  in  range(8):
rflag  =  l  &  1
l  >>=  1
if  part_h  &  1:  l  |=  (1L  <<  31)
part_h  >>=  1L
if  rflag:  part_h  ^=  0xd8000000L
_table_h.append(part_h)


Clone # 1062
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 292		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 274
data.is_partial_gene  =  consumer.text_field(  next_item  ) data.is_plasmid  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Pseudo:',  'Transpliced  gene:'  ) next_item  =  self._scan_field(  text,  'NCBI &nbsp;Entrez  record:',  'Genbank  accession:'  )
data.is_pseudo_gene  =  consumer.text_field(  next_item  ) data.entrez_record  =  consumer.text_field(  next_item  )


Clone # 1063
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 292		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 335
data.is_partial_gene  =  consumer.text_field(  next_item  ) data.is_partial_protein  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Pseudo:',  'Transpliced  gene:'  ) next_item  =  self._scan_field(  text,  'Plasmid:',  'Sequence  length:'  )
data.is_pseudo_gene  =  consumer.text_field(  next_item  ) data.is_plasmid  =  consumer.text_field(  next_item  )


Clone # 1064
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 271		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 332
data.shape  =  consumer.text_field(  next_item  ) data.gene_class  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Plasmid:',  'Complete  genome:'  ) next_item  =  self._scan_field(  text,  'Partial &nbsp;protein:',  'Conflict:'  )
data.is_plasmid  =  consumer.text_field(  next_item  ) data.is_partial_protein  =  consumer.text_field(  next_item  )


Clone # 1065
Anti-unification distance between two trees = 2
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 246		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 268
def  end_subsets(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.subsets.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.subsets.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.subsets.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.subsets.reactions.append(  reaction  )		 def  end_convex_basis(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.convex_basis.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.convex_basis.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.convex_basis.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.convex_basis.reactions.append(  reaction  )


Clone # 1066
Anti-unification distance between two trees = 2
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 246		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 237
def  end_subsets(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.subsets.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.subsets.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.subsets.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.subsets.reactions.append(  reaction  )		 def  end_kernel(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.kernel.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.kernel.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.kernel.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.kernel.reactions.append(  reaction  )


Clone # 1067
Anti-unification distance between two trees = 2
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 268
def  end_elementary_modes(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.elementary_modes.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.elementary_modes.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.elementary_modes.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.elementary_modes.reactions.append(  reaction  )		 def  end_convex_basis(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.convex_basis.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.convex_basis.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.convex_basis.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.convex_basis.reactions.append(  reaction  )


Clone # 1068
Anti-unification distance between two trees = 2
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/__init__.py"
The first line is 237
def  end_elementary_modes(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.elementary_modes.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.elementary_modes.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.elementary_modes.enzymes.append(  enzyme  )<BR> for  reaction  in  self._reactions:
self.data.elementary_modes.reactions.append(  reaction  )</span>		 def  end_kernel(  self,  content  ):
if(  self._vectors  !=  []  ):
self.data.kernel.matrix  =  Matrix.Matrix(  self._vectors  )
self.data.kernel.enzymes  =  []
for  enzyme  in  self._enzymes:
self.data.kernel.enzymes.append(  enzyme  )
for  reaction  in  self._reactions:
self.data.kernel.reactions.append(  reaction  )</span>


Clone # 1069
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/__init__.py"
The first line is 179		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/__init__.py"
The first line is 172
def  start_phenotype_block(  self,  line,  attrs  ):
self.save_characters()		 def  start_accnum_block(  self,  line,  attrs  ):
self.save_characters()
def  end_phenotype_block(  self,  locus_record  ):
block  =  self.get_characters()
self.parse_block(  block,  'PHENOTYPE'  )		 def  end_accnum_block(  self,  locus_record  ):
block  =  self.get_characters()
self.parse_block(  block,  'ACCNUM'  )
def  start_db_block(  self,  line,  attrs  ):
self.save_characters()		 def  start_phenotype_block(  self,  line,  attrs  ):
self.save_characters()


Clone # 1070
Anti-unification distance between two trees = 2
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 11		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 25
def  add_int_handler(klass,  tag,  attrname):
assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists"
assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists"
s  =  """if  1:
"""  %  attrname
d  =  {}
exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"])		 def  add_text_handler(klass,  tag,  attrname):
assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists"
assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists"
s  =  """if  1:
"""  %  attrname
d  =  {}
exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"])


Clone # 1071
Anti-unification distance between two trees = 3
Total size of two trees = 38
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 25		Source file "/home/peter/clone_digger/biopython-1.44/Bio/StdHandler.py"
The first line is 70
def  add_text_handler(klass,  tag,  attrname):
assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists"
assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists"
s  =  """if  1:
"""  %  attrname
d  =  {}
exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"])		 def  add_first_text_handler(klass,  tag,  attrname):
assert  not  hasattr(klass,  "start_"  +tag),  "existing  method  exists"
assert  not  hasattr(klass,  "end_"  +tag),  "existing  method  exists"
s  =  """if  1:
"""  %  (attrname,  attrname,  attrname)
d  =  {}
exec  s  in  d
setattr(klass,  "start_"  +  tag,  d["start"])
setattr(klass,  "end_"  +  tag,  d["end"])


Clone # 1072
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 318		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 337
next_item  =  self._scan_field(  text,  'Product  type:',  'Product  Class:'  ) next_item  =  self._scan_field(  text,  'Plasmid:',  'Sequence  length:'  )
data.product_type  =  consumer.text_field(  next_item  ) data.is_plasmid  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Product  Class:'  ) next_item  =  self._scan_field(  text,  'General  function:'  )


Clone # 1073
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 318		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 300
next_item  =  self._scan_field(  text,  'Product  type:',  'Product  Class:'  ) next_item  =  self._scan_field(  text,  'Chloroplast  origin:',  'Contains  intron(s):'  )
data.product_type  =  consumer.text_field(  next_item  ) data.chloroplast_origin  =  consumer.word_field(  next_item  )
next_item  =  self._scan_field(  text,  'Product  Class:'  ) next_item  =  self._scan_field(  text,  'Contains  intron(s):'  )


Clone # 1074
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 124		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 69
Record.__init__(  self  ) Record.__init__(  self  )
self.product_class  =  '' self.molecule_type  =  ''
self.gene_class  =  '' self.is_plasmid  =  ''
self.is_partial_protein  =  '' self.shape  =  ''
self.is_plasmid  =  '' self.submission_date  =  ''


Clone # 1075
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 124		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 90
Record.__init__(  self  ) Record.__init__(  self  )
self.product_class  =  '' self.gene_class  =  ''
self.gene_class  =  '' self.plasmid_encoded  =  ''
self.is_partial_protein  =  '' self.is_partial_gene  =  ''
self.is_plasmid  =  '' self.is_pseudo_gene  =  ''


Clone # 1076
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 69		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 90
Record.__init__(  self  ) Record.__init__(  self  )
self.molecule_type  =  '' self.gene_class  =  ''
self.is_plasmid  =  '' self.plasmid_encoded  =  ''
self.shape  =  '' self.is_partial_gene  =  ''
self.submission_date  =  '' self.is_pseudo_gene  =  ''


Clone # 1077
Anti-unification distance between two trees = 0
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/pairwise2.py"
The first line is 408		Source file "/home/peter/clone_digger/biopython-1.44/Bio/pairwise2.py"
The first line is 325
lenA,  lenB  =  len(sequenceA),  len(sequenceB) lenA,  lenB  =  len(sequenceA),  len(sequenceB)
score_matrix,  trace_matrix  =  [],  [] score_matrix,  trace_matrix  =  [],  []
for  i  in  range(lenA):
score_matrix.append([None]  *  lenB)
trace_matrix.append([[None]]  *  lenB)		 for  i  in  range(lenA):
score_matrix.append([None]  *  lenB)
trace_matrix.append([[None]]  *  lenB)


Clone # 1078
Anti-unification distance between two trees = 3
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Data/CodonTable.py"
The first line is 675		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Data/CodonTable.py"
The first line is 682
ambiguous_dna_by_name  =  {} ambiguous_dna_by_id  =  {}
for  key,  val  in  unambiguous_dna_by_name.items():
ambiguous_dna_by_name[key]  =  AmbiguousCodonTable(val,
IUPAC.ambiguous_dna,
IUPACData.ambiguous_dna_values,
IUPAC.extended_protein,
IUPACData.extended_protein_values)		 for  key,  val  in  unambiguous_dna_by_id.items():
ambiguous_dna_by_id[key]  =  AmbiguousCodonTable(val,
IUPAC.ambiguous_dna,
IUPACData.ambiguous_dna_values,
IUPAC.extended_protein,
IUPACData.extended_protein_values)
ambiguous_dna_by_id  =  {} ambiguous_rna_by_name  =  {}


Clone # 1079
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 271		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 292
data.shape  =  consumer.text_field(  next_item  ) data.is_partial_gene  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Plasmid:',  'Complete  genome:'  ) next_item  =  self._scan_field(  text,  'Pseudo:',  'Transpliced  gene:'  )
data.is_plasmid  =  consumer.text_field(  next_item  ) data.is_pseudo_gene  =  consumer.text_field(  next_item  )


Clone # 1080
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 329		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 292
data.product_class  =  consumer.text_field(  next_item  ) data.is_partial_gene  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Gene  Class:',  'Partial  protein:'  ) next_item  =  self._scan_field(  text,  'Pseudo:',  'Transpliced  gene:'  )
data.gene_class  =  consumer.text_field(  next_item  ) data.is_pseudo_gene  =  consumer.text_field(  next_item  )


Clone # 1081
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 286		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 271
data.gene_class  =  consumer.text_field(  next_item  ) data.shape  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Plasmid  encoded:',  'Partial  gene:'  ) next_item  =  self._scan_field(  text,  'Plasmid:',  'Complete  genome:'  )
data.is_plasmid  =  consumer.word_field(  next_item  ) data.is_plasmid  =  consumer.text_field(  next_item  )


Clone # 1082
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 268		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 271
data.molecule_type  =  consumer.text_field(  next_item  ) data.shape  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Shape &nbsp;of  molecule:',  'Sequence  length:'  ) next_item  =  self._scan_field(  text,  'Plasmid:',  'Complete  genome:'  )
data.shape  =  consumer.text_field(  next_item  ) data.is_plasmid  =  consumer.text_field(  next_item  )


Clone # 1083
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 274		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 277
data.is_plasmid  =  consumer.text_field(  next_item  ) data.entrez_record  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'NCBI  Entrez  record:',  'Genbank  accession:'  ) next_item  =  self._scan_field(  text,  'Genbank  accession:',  'Coding  gene(s):'  )
data.entrez_record  =  consumer.text_field(  next_item  ) data.genbank_accession  =  consumer.text_field(  next_item  )


Clone # 1084
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 295		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 335
data.is_pseudo_gene  =  consumer.text_field(  next_item  ) data.is_partial_protein  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Transpliced  gene:',  'Chloroplast  origin:'  ) next_item  =  self._scan_field(  text,  'Plasmid:',  'Sequence  length:'  )
data.is_transpliced_gene  =  consumer.text_field(  next_item  ) data.is_plasmid  =  consumer.text_field(  next_item  )


Clone # 1085
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 268		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 292
data.molecule_type  =  consumer.text_field(  next_item  ) data.is_partial_gene  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Shape  of  molecule:',  'Sequence  length:'  ) next_item  =  self._scan_field(  text,  'Pseudo:',  'Transpliced  gene:'  )
data.shape  =  consumer.text_field(  next_item  ) data.is_pseudo_gene  =  consumer.text_field(  next_item  )


Clone # 1086
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 271		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 329
data.shape  =  consumer.text_field(  next_item  ) data.product_class  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Plasmid:',  'Complete  genome:'  ) next_item  =  self._scan_field(  text,  'Gene  Class:',  'Partial  protein:'  )
data.is_plasmid  =  consumer.text_field(  next_item  ) data.gene_class  =  consumer.text_field(  next_item  )


Clone # 1087
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 277		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 335
data.entrez_record  =  consumer.text_field(  next_item  ) data.is_partial_protein  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Genbank &nbsp;accession:',  'Coding  gene(s):'  ) next_item  =  self._scan_field(  text,  'Plasmid:',  'Sequence  length:'  )
data.genbank_accession  =  consumer.text_field(  next_item  ) data.is_plasmid  =  consumer.text_field(  next_item  )


Clone # 1088
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 329		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 274
data.product_class  =  consumer.text_field(  next_item  ) data.is_plasmid  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Gene  Class:',  'Partial  protein:'  ) next_item  =  self._scan_field(  text,  'NCBI  Entrez &nbsp;record:',  'Genbank  accession:'  )
data.gene_class  =  consumer.text_field(  next_item  ) data.entrez_record  =  consumer.text_field(  next_item  )


Clone # 1089
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 268		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 274
data.molecule_type  =  consumer.text_field(  next_item  ) data.is_plasmid  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Shape  of  molecule:',  'Sequence  length:'  ) next_item  =  self._scan_field(  text,  'NCBI  Entrez  record:',  'Genbank  accession:'  )
data.shape  =  consumer.text_field(  next_item  ) data.entrez_record  =  consumer.text_field(  next_item  )


Clone # 1090
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 329		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 332
data.product_class  =  consumer.text_field(  next_item  ) data.gene_class  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Gene  Class:',  'Partial  protein:'  ) next_item  =  self._scan_field(  text,  'Partial  protein:',  'Conflict:'  )
data.gene_class  =  consumer.text_field(  next_item  ) data.is_partial_protein  =  consumer.text_field(  next_item  )


Clone # 1091
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 329		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 295
data.product_class  =  consumer.text_field(  next_item  ) data.is_pseudo_gene  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Gene  Class:',  'Partial  protein:'  ) next_item  =  self._scan_field(  text,  'Transpliced  gene:',  'Chloroplast  origin:'  )
data.gene_class  =  consumer.text_field(  next_item  ) data.is_transpliced_gene  =  consumer.text_field(  next_item  )


Clone # 1092
Anti-unification distance between two trees = 4
Total size of two trees = 38
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 268		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 295
data.molecule_type  =  consumer.text_field(  next_item  ) data.is_pseudo_gene  =  consumer.text_field(  next_item  )
next_item  =  self._scan_field(  text,  'Shape  of &nbsp;molecule:',  'Sequence  length:'  ) next_item  =  self._scan_field(  text,  'Transpliced  gene:',  'Chloroplast  origin:'  )
data.shape  =  consumer.text_field(  next_item  ) data.is_transpliced_gene  =  consumer.text_field(  next_item  )


Clone # 1093
Anti-unification distance between two trees = 3
Total size of two trees = 37
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 75		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 141
output  =  output  +  '(%s:'  %  self.cell_dict[  composite_key  ] output  =  output  +  '(%s:'  %  self.cell_dict[  composite_key  ]
composite_key  =  'system'  +  str(  system  )  +  'id0' composite_key  =  prefix  +  'id0'
output  =  output  +  '%s,'  %  self.cell_dict[  composite_key  ] output  =  output  +  '%s,'  %  self.cell_dict[  composite_key  ]


Clone # 1094
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 405		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 354
def  special_list(self,  line):
assert  not  self.data.special_list,  "special  list  already  defined"
self.data.special_list  =  self._clean(line)		 def  class_update_date(self,  line):
assert  not  self.data.class_update_date,  \
"class  update  date  already  defined"
self.data.class_update_date  =  self._clean(line)
def  last_revision_date(self,  line):
assert  not  self.data.last_revision_date,  \
"last  revision  date  already  defined"
self.data.last_revision_date  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)


Clone # 1095
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 388
def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)		 def  issue_part_supplement(self,  line):
assert  not  self.data.issue_part_supplement,  \
"issue/part/supplement  already  defined"
self.data.issue_part_supplement  =  self._clean(line)
def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)		 def  issn(self,  line):
assert  not  self.data.issn,  "ISSN  already  defined"
self.data.issn  =  self._clean(line)


Clone # 1096
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 434		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 388
def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)		 def  issue_part_supplement(self,  line):
assert  not  self.data.issue_part_supplement,  \
"issue/part/supplement  already  defined"
self.data.issue_part_supplement  =  self._clean(line)
def  substance_name(self,  line):
assert  not  self.data.substance_name,  "substance  name  already  defined"
self.data.substance_name  =  self._clean(line)		 def  issn(self,  line):
assert  not  self.data.issn,  "ISSN  already  defined"
self.data.issn  =  self._clean(line)


Clone # 1097
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 442		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 397
def  pagination(self,  line):
assert  not  self.data.pagination,  "pagination  already  defined"
self.data.pagination  =  self._clean(line)		 def  journal_title_code(self,  line):
assert  not  self.data.journal_title_code,  \
"journal  title  code  already  defined"
self.data.journal_title_code  =  self._clean(line)
def  personal_name_as_subject(self,  line):
self.data.personal_name_as_subjects.append(self._clean(line))		 def  language(self,  line):
self.data.languages.append(self._clean(line))


Clone # 1098
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 367		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 388
def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)		 def  issue_part_supplement(self,  line):
assert  not  self.data.issue_part_supplement,  \
"issue/part/supplement  already  defined"
self.data.issue_part_supplement  =  self._clean(line)
def  english_abstract(self,  line):
assert  not  self.data.english_abstract,  \
"english  abstract  already  defined"
self.data.english_abstract  =  self._clean(line)		 def  issn(self,  line):
assert  not  self.data.issn,  "ISSN  already  defined"
self.data.issn  =  self._clean(line)


Clone # 1099
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 377		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 397
def  entry_month(self,  line):
assert  not  self.data.entry_month,  \
"entry  month  already  defined"
self.data.entry_month  =  self._clean(line)		 def  journal_title_code(self,  line):
assert  not  self.data.journal_title_code,  \
"journal  title  code  already  defined"
self.data.journal_title_code  =  self._clean(line)
def  gene_symbol(self,  line):
self.data.gene_symbols.append(self._clean(line))		 def  language(self,  line):
self.data.languages.append(self._clean(line))


Clone # 1100
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 429		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 363
def  major_revision_date(self,  line):
assert  not  self.data.major_revision_date,  \
"major  revision  date  already  defined"
self.data.major_revision_date  =  self._clean(line)		 def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)
def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)		 def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)


Clone # 1101
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 438		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 372
def  substance_name(self,  line):
assert  not  self.data.substance_name,  "substance  name  already  defined"
self.data.substance_name  =  self._clean(line)		 def  english_abstract(self,  line):
assert  not  self.data.english_abstract,  \
"english  abstract  already  defined"
self.data.english_abstract  =  self._clean(line)
def  pagination(self,  line):
assert  not  self.data.pagination,  "pagination  already  defined"
self.data.pagination  =  self._clean(line)		 def  entry_month(self,  line):
assert  not  self.data.entry_month,  \
"entry  month  already  defined"
self.data.entry_month  =  self._clean(line)


Clone # 1102
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 446		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 382
def  personal_name_as_subject(self,  line):
self.data.personal_name_as_subjects.append(self._clean(line))		 def  gene_symbol(self,  line):
self.data.gene_symbols.append(self._clean(line))
def  publication_type(self,  line):
self.data.publication_types.append(self._clean(line))		 def  identification(self,  line):
self.data.identifications.append(self._clean(line))


Clone # 1103
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 434		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490
def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)		 def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)
def  substance_name(self,  line):
assert  not  self.data.substance_name,  "substance  name  already  defined"
self.data.substance_name  =  self._clean(line)		 def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)


Clone # 1104
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 367		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490
def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)		 def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)
def  english_abstract(self,  line):
assert  not  self.data.english_abstract,  \
"english  abstract  already  defined"
self.data.english_abstract  =  self._clean(line)		 def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)


Clone # 1105
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 359		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 354
def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)		 def  class_update_date(self,  line):
assert  not  self.data.class_update_date,  \
"class  update  date  already  defined"
self.data.class_update_date  =  self._clean(line)
def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)


Clone # 1106
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 367		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 363
def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)		 def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)
def  english_abstract(self,  line):
assert  not  self.data.english_abstract,  \
"english  abstract  already  defined"
self.data.english_abstract  =  self._clean(line)		 def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)


Clone # 1107
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 363
def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)		 def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)
def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)		 def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)


Clone # 1108
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 359
def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)
def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)		 def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)


Clone # 1109
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 429		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 359
def  major_revision_date(self,  line):
assert  not  self.data.major_revision_date,  \
"major  revision  date  already  defined"
self.data.major_revision_date  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)
def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)		 def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)


Clone # 1110
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 438		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 367
def  substance_name(self,  line):
assert  not  self.data.substance_name,  "substance  name  already  defined"
self.data.substance_name  =  self._clean(line)		 def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)
def  pagination(self,  line):
assert  not  self.data.pagination,  "pagination  already  defined"
self.data.pagination  =  self._clean(line)		 def  english_abstract(self,  line):
assert  not  self.data.english_abstract,  \
"english  abstract  already  defined"
self.data.english_abstract  =  self._clean(line)


Clone # 1111
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 363		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 354
def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)		 def  class_update_date(self,  line):
assert  not  self.data.class_update_date,  \
"class  update  date  already  defined"
self.data.class_update_date  =  self._clean(line)
def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)


Clone # 1112
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 372		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 363
def  english_abstract(self,  line):
assert  not  self.data.english_abstract,  \
"english  abstract  already  defined"
self.data.english_abstract  =  self._clean(line)		 def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)
def  entry_month(self,  line):
assert  not  self.data.entry_month,  \
"entry  month  already  defined"
self.data.entry_month  =  self._clean(line)		 def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)


Clone # 1113
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 494		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490
def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)		 def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)
def  pubmed_id(self,  line):
assert  not  self.data.pubmed_id,  "PMID  already  defined"
self.data.pubmed_id  =  self._clean(line)		 def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)


Clone # 1114
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 429
def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)		 def  major_revision_date(self,  line):
assert  not  self.data.major_revision_date,  \
"major  revision  date  already  defined"
self.data.major_revision_date  =  self._clean(line)
def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)		 def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)


Clone # 1115
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 354
def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)		 def  class_update_date(self,  line):
assert  not  self.data.class_update_date,  \
"class  update  date  already  defined"
self.data.class_update_date  =  self._clean(line)
def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)


Clone # 1116
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 438		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490
def  substance_name(self,  line):
assert  not  self.data.substance_name,  "substance  name  already  defined"
self.data.substance_name  =  self._clean(line)		 def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)
def  pagination(self,  line):
assert  not  self.data.pagination,  "pagination  already  defined"
self.data.pagination  =  self._clean(line)		 def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)


Clone # 1117
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 434		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 429
def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)		 def  major_revision_date(self,  line):
assert  not  self.data.major_revision_date,  \
"major  revision  date  already  defined"
self.data.major_revision_date  =  self._clean(line)
def  substance_name(self,  line):
assert  not  self.data.substance_name,  "substance  name  already  defined"
self.data.substance_name  =  self._clean(line)		 def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)


Clone # 1118
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 434		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 354
def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)		 def  class_update_date(self,  line):
assert  not  self.data.class_update_date,  \
"class  update  date  already  defined"
self.data.class_update_date  =  self._clean(line)
def  substance_name(self,  line):
assert  not  self.data.substance_name,  "substance  name  already  defined"
self.data.substance_name  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)


Clone # 1119
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 393		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490
def  issn(self,  line):
assert  not  self.data.issn,  "ISSN  already  defined"
self.data.issn  =  self._clean(line)		 def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)
def  journal_title_code(self,  line):
assert  not  self.data.journal_title_code,  \
"journal  title  code  already  defined"
self.data.journal_title_code  =  self._clean(line)		 def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)


Clone # 1120
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 388		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 363
def  issue_part_supplement(self,  line):
assert  not  self.data.issue_part_supplement,  \
"issue/part/supplement  already  defined"
self.data.issue_part_supplement  =  self._clean(line)		 def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)</span>
def  issn(self,  line):
assert  not  self.data.issn,  "ISSN  already  defined"
self.data.issn  =  self._clean(line)		 def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)


Clone # 1121
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 388		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 359
def  issue_part_supplement(self,  line):
assert  not  self.data.issue_part_supplement,  \
"issue/part/supplement  already  defined"
self.data.issue_part_supplement  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)</span>
def  issn(self,  line):
assert  not  self.data.issn,  "ISSN  already  defined"
self.data.issn  =  self._clean(line)		 def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)


Clone # 1122
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 372		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 490
def  english_abstract(self,  line):
assert  not  self.data.english_abstract,  \
"english  abstract  already  defined"
self.data.english_abstract  =  self._clean(line)		 def  volume_issue(self,  line):
assert  not  self.data.volume_issue,  "volume  issue  already  defined"
self.data.volume_issue  =  self._clean(line)
def  entry_month(self,  line):
assert  not  self.data.entry_month,  \
"entry  month  already  defined"
self.data.entry_month  =  self._clean(line)		 def  year(self,  line):
assert  not  self.data.year,  "year  already  defined"
self.data.year  =  self._clean(line)


Clone # 1123
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 367		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 429
def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)		 def  major_revision_date(self,  line):
assert  not  self.data.major_revision_date,  \
"major  revision  date  already  defined"
self.data.major_revision_date  =  self._clean(line)
def  english_abstract(self,  line):
assert  not  self.data.english_abstract,  \
"english  abstract  already  defined"
self.data.english_abstract  =  self._clean(line)		 def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)


Clone # 1124
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 367		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 354
def  publication_date(self,  line):
assert  not  self.data.publication_date,  \
"publication  date  already  defined"
self.data.publication_date  =  self._clean(line)		 def  class_update_date(self,  line):
assert  not  self.data.class_update_date,  \
"class  update  date  already  defined"
self.data.class_update_date  =  self._clean(line)
def  english_abstract(self,  line):
assert  not  self.data.english_abstract,  \
"english  abstract  already  defined"
self.data.english_abstract  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)


Clone # 1125
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MarkovModel.py"
The first line is 324		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MarkovModel.py"
The first line is 308
lprob  =  LOG0 lprob  =  LOG0
for  j  in  range(N):
lp  =  matrix[j][t+1]  +  \
lp_transition[i][j]  +  \
lp_emission[i][k]
lprob  =  _logadd(lprob,  lp)		 for  i  in  range(N):
lp  =  matrix[i][t-1]  +  \
lp_transition[i][j]  +  \
lp_emission[i][k]
lprob  =  _logadd(lprob,  lp)


Clone # 1126
Anti-unification distance between two trees = 2
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 338		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 475
def  abstract(self,  line):
self.data.abstract  =  self.data.abstract  +  self._clean(line,  rstrip=0)		 def  title_abbreviation(self,  line):
self.data.title_abbreviation  =  self.data.title_abbreviation  +  \
self._clean(line,  rstrip=0)
def  address(self,  line):
self.data.address  =  self.data.address  +  self._clean(line,  rstrip=0)		 def  title(self,  line):
self.data.title  =  self.data.title  +  self._clean(line,  rstrip=0)


Clone # 1127
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 457		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 460
def  cas_registry_number(self,  line):
self.data.registry_numbers.append(self._clean(line))		 def  record_originator(self,  line):
self.data.record_originators.append(self._clean(line))
def  record_originator(self,  line):
self.data.record_originators.append(self._clean(line))		 def  journal_subset(self,  line):
self.data.journal_subsets.append(self._clean(line))


Clone # 1128
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 463		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 466
def  journal_subset(self,  line):
self.data.journal_subsets.append(self._clean(line))		 def  subheadings(self,  line):
self.data.mesh_subheadings.append(self._clean(line))
def  subheadings(self,  line):
self.data.mesh_subheadings.append(self._clean(line))		 def  secondary_source_id(self,  line):
self.data.secondary_source_ids.append(self._clean(line))


Clone # 1129
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/LocationParser.py"
The first line is 134		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Decode.py"
The first line is 190
def  t_caret(self,  input):
self.rv.append(Token("caret"))		 def  t_close_paren(self,  input):
self.rv.append(Token("close_paren"))
def  t_comma(self,  input):
self.rv.append(Token("comma"))		 def  t_comma(self,  input):
self.rv.append(Token("comma"))


Clone # 1130
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 434		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 359
def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)
def  substance_name(self,  line):
assert  not  self.data.substance_name,  "substance  name  already  defined"
self.data.substance_name  =  self._clean(line)		 def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)


Clone # 1131
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 385		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 426
def  identification(self,  line):
self.data.identifications.append(self._clean(line))		 def  mesh_tree_number(self,  line):
self.data.mesh_tree_numbers.append(self._clean(line))
def  issue_part_supplement(self,  line):
assert  not  self.data.issue_part_supplement,  \
"issue/part/supplement  already  defined"
self.data.issue_part_supplement  =  self._clean(line)		 def  major_revision_date(self,  line):
assert  not  self.data.major_revision_date,  \
"major  revision  date  already  defined"
self.data.major_revision_date  =  self._clean(line)


Clone # 1132
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 393		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 434
def  issn(self,  line):
assert  not  self.data.issn,  "ISSN  already  defined"
self.data.issn  =  self._clean(line)		 def  no_author(self,  line):
assert  not  self.data.no_author,  "no  author  already  defined"
self.data.no_author  =  self._clean(line)
def  journal_title_code(self,  line):
assert  not  self.data.journal_title_code,  \
"journal  title  code  already  defined"
self.data.journal_title_code  =  self._clean(line)		 def  substance_name(self,  line):
assert  not  self.data.substance_name,  "substance  name  already  defined"
self.data.substance_name  =  self._clean(line)


Clone # 1133
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 393		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 359
def  issn(self,  line):
assert  not  self.data.issn,  "ISSN  already  defined"
self.data.issn  =  self._clean(line)		 def  country(self,  line):
assert  not  self.data.country,  "country  already  defined"
self.data.country  =  self._clean(line)
def  journal_title_code(self,  line):
assert  not  self.data.journal_title_code,  \
"journal  title  code  already  defined"
self.data.journal_title_code  =  self._clean(line)		 def  entry_date(self,  line):
assert  not  self.data.entry_date,  "entry  date  already  defined"
self.data.entry_date  =  self._clean(line)


Clone # 1134
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 402		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 426
def  language(self,  line):
self.data.languages.append(self._clean(line))		 def  mesh_tree_number(self,  line):
self.data.mesh_tree_numbers.append(self._clean(line))
def  special_list(self,  line):
assert  not  self.data.special_list,  "special  list  already  defined"
self.data.special_list  =  self._clean(line)		 def  major_revision_date(self,  line):
assert  not  self.data.major_revision_date,  \
"major  revision  date  already  defined"
self.data.major_revision_date  =  self._clean(line)


Clone # 1135
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 402		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 385
def  language(self,  line):
self.data.languages.append(self._clean(line))		 def  identification(self,  line):
self.data.identifications.append(self._clean(line))
def  special_list(self,  line):
assert  not  self.data.special_list,  "special  list  already  defined"
self.data.special_list  =  self._clean(line)		 def  issue_part_supplement(self,  line):
assert  not  self.data.issue_part_supplement,  \
"issue/part/supplement  already  defined"
self.data.issue_part_supplement  =  self._clean(line)


Clone # 1136
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 97		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 94
out  =  out  +  '\n\nInternal  Metabolites\n\ncount        name\n\n' out  =  out  +  '\n\nExternal  Metabolites\n\ncount        name\n\n'
for  metabolite  in  self.internal_metabolites:
out  =  out  +  str(  metabolite  )		 for  metabolite  in  self.external_metabolites:
out  =  out  +  str(  metabolite  )
out  =  out  +  '\n\nBranch  Metabolites\n\n' out  =  out  +  '\n\nInternal  Metabolites\n\ncount        name\n\n'
for  metabolite  in  self.branch_metabolites:
out  =  out  +  str(  metabolite  )		 for  metabolite  in  self.internal_metabolites:
out  =  out  +  str(  metabolite  )


Clone # 1137
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 710		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 712
attempt_read_and_call(uhandle,  consumer.threshold,  start='T') attempt_read_and_call(uhandle,  consumer.threshold,  start='Neighboring  words  threshold')
attempt_read_and_call(uhandle,  consumer.threshold,  start='Neighboring  words  threshold') attempt_read_and_call(uhandle,  consumer.window_size,  start='A')
attempt_read_and_call(uhandle,  consumer.window_size,  start='A') attempt_read_and_call(uhandle,  consumer.window_size,  start='Window  for  multiple  hits')


Clone # 1138
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 93		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 92
read_and_call(uhandle,  consumer.noevent,  start  =  'TRAINING  SET') read_and_call_until(uhandle,  consumer.noevent,  start  =  'TRAINING  SET')
read_and_call(uhandle,  consumer.noevent,  start  =  '****') read_and_call(uhandle,  consumer.noevent,  start  =  'TRAINING  SET')
read_and_call(uhandle,  consumer._datafile,  start  =  'DATAFILE') read_and_call(uhandle,  consumer.noevent,  start  =  '****')


Clone # 1139
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 115		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 91
read_and_call_until(uhandle,  consumer.add_to_logodds,  start  =  '---') read_and_call(uhandle,  consumer._version,  start  =  'MEME  version')
read_and_call_until(uhandle,  consumer.noevent,  start  =  'letter-probability  matrix') read_and_call_until(uhandle,  consumer.noevent,  start  =  'TRAINING  SET')
read_and_call(uhandle,  consumer.noevent,  start  =  'letter-probability  matrix') read_and_call(uhandle,  consumer.noevent,  start  =  'TRAINING  SET')


Clone # 1140
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/KeyWList.py"
The first line is 78		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIWWW.py"
The first line is 660
read_and_call(uhandle,  consumer.noevent,  start='List  of  keywords') attempt_read_and_call(uhandle,  consumer.blast_cutoff,  start='S2')
read_and_call(uhandle,  consumer.noevent,  blank=1) attempt_read_and_call(uhandle,  consumer.noevent,  blank=1)
read_and_call(uhandle,  consumer.noevent,  start='----') attempt_read_and_call(uhandle,  consumer.noevent,  start="")


Clone # 1141
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIWWW.py"
The first line is 660		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MEME/Parser.py"
The first line is 120
attempt_read_and_call(uhandle,  consumer.blast_cutoff,  start='S2') read_and_call(uhandle,  consumer.noevent,  start  =  'Time')
attempt_read_and_call(uhandle,  consumer.noevent,  blank=1) read_and_call(uhandle,  consumer.noevent,  blank  =  1)
attempt_read_and_call(uhandle,  consumer.noevent,  start="") read_and_call(uhandle,  consumer.noevent,  start  =  '***')


Clone # 1142
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIWWW.py"
The first line is 660		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/KeyWList.py"
The first line is 75
attempt_read_and_call(uhandle,  consumer.blast_cutoff,  start='S2') read_and_call(uhandle,  consumer.noevent,  start='----')
attempt_read_and_call(uhandle,  consumer.noevent,  blank=1) read_and_call(uhandle,  consumer.noevent,  blank=1)
attempt_read_and_call(uhandle,  consumer.noevent,  start="") read_and_call(uhandle,  consumer.noevent,  start='List  of  keywords')


Clone # 1143
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 185		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 183
end_kernel  =  Group(  "end_kernel",  \
Rep(  Expression.Assert(  subsets_tag,  1  )  +  ToEol()  )  )		 end_not_balanced  =  Group(  "end_not_balanced",  \
Rep(  Expression.Assert(  kernel_tag,  1  )  +  ToEol()  )  )
end_subsets  =  Group(  "end_subsets",  \
Rep(  Expression.Assert(  reduced_system_tag,  1  )  +  ToEol()  )  )		 end_kernel  =  Group(  "end_kernel",  \
Rep(  Expression.Assert(  subsets_tag,  1  )  +  ToEol()  )  )


Clone # 1144
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 189		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 187
end_reduced_system  =  Group(  "end_reduced_system",  \
Rep(  Expression.Assert(  convex_basis_tag,  1  )  +  ToEol()  )  )		 end_subsets  =  Group(  "end_subsets",  \
Rep(  Expression.Assert(  reduced_system_tag,  1  )  +  ToEol()  )  )
end_convex_basis  =  Group(  "end_convex_basis",  \
Rep(  Expression.Assert(  conservation_relations_tag,  1  )  +  ToEol()  )  )		 end_reduced_system  =  Group(  "end_reduced_system",  \
Rep(  Expression.Assert(  convex_basis_tag,  1  )  +  ToEol()  )  )


Clone # 1145
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 183		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 187
end_not_balanced  =  Group(  "end_not_balanced",  \
Rep(  Expression.Assert(  kernel_tag,  1  )  +  ToEol()  )  )		 end_subsets  =  Group(  "end_subsets",  \
Rep(  Expression.Assert(  reduced_system_tag,  1  )  +  ToEol()  )  )
end_kernel  =  Group(  "end_kernel",  \
Rep(  Expression.Assert(  subsets_tag,  1  )  +  ToEol()  )  )		 end_reduced_system  =  Group(  "end_reduced_system",  \
Rep(  Expression.Assert(  convex_basis_tag,  1  )  +  ToEol()  )  )


Clone # 1146
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 187		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 191
end_subsets  =  Group(  "end_subsets",  \
Rep(  Expression.Assert(  reduced_system_tag,  1  )  +  ToEol()  )  )		 end_convex_basis  =  Group(  "end_convex_basis",  \
Rep(  Expression.Assert(  conservation_relations_tag,  1  )  +  ToEol()  )  )
end_reduced_system  =  Group(  "end_reduced_system",  \
Rep(  Expression.Assert(  convex_basis_tag,  1  )  +  ToEol()  )  )		 end_conservation_relations  =  Group(  "end_conservation_relations",  \
Rep(  Expression.Assert(  elementary_modes_tag,  1  )  +  ToEol()  )  )


Clone # 1147
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 183		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 189
end_not_balanced  =  Group(  "end_not_balanced",  \
Rep(  Expression.Assert(  kernel_tag,  1  )  +  ToEol()  )  )		 end_reduced_system  =  Group(  "end_reduced_system",  \
Rep(  Expression.Assert(  convex_basis_tag,  1  )  +  ToEol()  )  )
end_kernel  =  Group(  "end_kernel",  \
Rep(  Expression.Assert(  subsets_tag,  1  )  +  ToEol()  )  )		 end_convex_basis  =  Group(  "end_convex_basis",  \
Rep(  Expression.Assert(  conservation_relations_tag,  1  )  +  ToEol()  )  )


Clone # 1148
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 183		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/metatool_format.py"
The first line is 191
end_not_balanced  =  Group(  "end_not_balanced",  \
Rep(  Expression.Assert(  kernel_tag,  1  )  +  ToEol()  )  )		 end_convex_basis  =  Group(  "end_convex_basis",  \
Rep(  Expression.Assert(  conservation_relations_tag,  1  )  +  ToEol()  )  )
end_kernel  =  Group(  "end_kernel",  \
Rep(  Expression.Assert(  subsets_tag,  1  )  +  ToEol()  )  )		 end_conservation_relations  =  Group(  "end_conservation_relations",  \
Rep(  Expression.Assert(  elementary_modes_tag,  1  )  +  ToEol()  )  )


Clone # 1149
Anti-unification distance between two trees = 3
Total size of two trees = 36
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 310		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 307
data.orf  =  consumer.word_field(  next_item  ) data.included_in_intron  =  consumer.word_field(  next_item  )
next_item  =  self._scan_field(  text,  'NCBI  Entrez  record:'  ) next_item  =  self._scan_field(  text,  'ORF:'  )
data.entrez_record  =  consumer.word_field(  next_item  ) data.orf  =  consumer.word_field(  next_item  )


Clone # 1150
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 34		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 24
from  Martel  import  Rep from  Martel  import  ToEol
from  Martel  import  Rep1 from  Martel  import  AnyEol
from  Martel  import  Any from  Martel  import  Any
from  Martel  import  AnyBut from  Martel  import  Word
from  Martel  import  Assert from  Martel  import  Opt
from  Martel  import  AssertNot from  Martel  import  AssertNot


Clone # 1151
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 12
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 33
from  Martel  import  Str from  Martel  import  ToEol
from  Martel  import  Str1 from  Martel  import  Group
from  Martel  import  Alt from  Martel  import  Alt
from  Martel  import  Rep from  Martel  import  Rep
from  Martel  import  Group from  Martel  import  Rep1
from  Martel  import  ToEol from  Martel  import  Any


Clone # 1152
Anti-unification distance between two trees = 4
Total size of two trees = 36
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 338		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 301
data.is_plasmid  =  consumer.text_field(  next_item  ) data.chloroplast_origin  =  consumer.word_field(  next_item  )
next_item  =  self._scan_field(  text,  'General  function:'  ) next_item  =  self._scan_field(  text,  'Contains  intron(s):'  )
data.function  =  consumer.text_field(  next_item  ) data.contains_intron  =  consumer.word_field(  next_item  )


Clone # 1153
Anti-unification distance between two trees = 4
Total size of two trees = 35
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 397		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 347
def  journal_title_code(self,  line):
assert  not  self.data.journal_title_code,  \
"journal  title  code  already  defined"
self.data.journal_title_code  =  self._clean(line)		 def  call_number(self,  line):
assert  not  self.data.call_number,  "call  numbers  already  defined"
self.data.call_number  =  self._clean(line)
def  language(self,  line):
self.data.languages.append(self._clean(line))		 def  comments(self,  line):
self.data.comments.append(self._clean(line))


Clone # 1154
Anti-unification distance between two trees = 4
Total size of two trees = 35
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/MeltingTemp.py"
The first line is 116		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqUtils/MeltingTemp.py"
The first line is 103
vs=vs+(overcount(sup,"CG"))*26.7+(overcount(sup,"GC"))*36.9+(overcount(sup,"GG"))*32.7+(overcount(sup,"CC"))*29.7 vs=vs+(overcount(sup,"CG"))*27.2+(overcount(sup,"GC"))*24.4+(overcount(sup,"GG"))*19.9+(overcount(sup,"CC"))*19.9
ds=vs ds=vs
dh=vh dh=vh


Clone # 1155
Anti-unification distance between two trees = 4
Total size of two trees = 35
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 426		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 351
def  mesh_tree_number(self,  line):
self.data.mesh_tree_numbers.append(self._clean(line))		 def  comments(self,  line):
self.data.comments.append(self._clean(line))
def  major_revision_date(self,  line):
assert  not  self.data.major_revision_date,  \
"major  revision  date  already  defined"
self.data.major_revision_date  =  self._clean(line)		 def  class_update_date(self,  line):
assert  not  self.data.class_update_date,  \
"class  update  date  already  defined"
self.data.class_update_date  =  self._clean(line)


Clone # 1156
Anti-unification distance between two trees = 4
Total size of two trees = 35
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 385		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 351
def  identification(self,  line):
self.data.identifications.append(self._clean(line))		 def  comments(self,  line):
self.data.comments.append(self._clean(line))
def  issue_part_supplement(self,  line):
assert  not  self.data.issue_part_supplement,  \
"issue/part/supplement  already  defined"
self.data.issue_part_supplement  =  self._clean(line)		 def  class_update_date(self,  line):
assert  not  self.data.class_update_date,  \
"class  update  date  already  defined"
self.data.class_update_date  =  self._clean(line)


Clone # 1157
Anti-unification distance between two trees = 4
Total size of two trees = 34
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1272		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1278
def  hsps_prelim_gapped(self,  line):
self._params.hsps_prelim_gapped,  =  _get_cols(
line,  (-1,),  ncols=9,  expected={4:"gapped",  6:"prelim"})
self._params.hsps_prelim_gapped  =  _safe_int(
self._params.hsps_prelim_gapped)		 def  hsps_prelim_gapped_attempted(self,  line):
self._params.hsps_prelim_gapped_attempted,  =  _get_cols(
line,  (-1,),  ncols=10,  expected={4:"attempted",  7:"prelim"})
self._params.hsps_prelim_gapped_attempted  =  _safe_int(
self._params.hsps_prelim_gapped_attempted)


Clone # 1158
Anti-unification distance between two trees = 2
Total size of two trees = 34
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1289		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1294
def  query_length(self,  line):
self._params.query_length,  =  _get_cols(
line.lower(),  (-1,),  ncols=4,  expected={0:"length",  2:"query:"})
self._params.query_length  =  _safe_int(self._params.query_length)		 def  database_length(self,  line):
self._params.database_length,  =  _get_cols(
line.lower(),  (-1,),  ncols=4,  expected={0:"length",  2:"database:"})
self._params.database_length  =  _safe_int(self._params.database_length)


Clone # 1159
Anti-unification distance between two trees = 4
Total size of two trees = 34
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1294		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1311
def  database_length(self,  line):
self._params.database_length,  =  _get_cols(
line.lower(),  (-1,),  ncols=4,  expected={0:"length",  2:"database:"})
self._params.database_length  =  _safe_int(self._params.database_length)		 def  effective_database_length(self,  line):
self._params.effective_database_length,  =  _get_cols(
line.lower(),  (-1,),  ncols=5,  expected={1:"length",  3:"database:"})
self._params.effective_database_length  =  _safe_int(
self._params.effective_database_length)


Clone # 1160
Anti-unification distance between two trees = 4
Total size of two trees = 34
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Scanner.py"
The first line is 840		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Scanner.py"
The first line is 773
assert  line[54:55]  ==  '  ',  \
'LOCUS  line  does  not  contain  space  at  position  55:\n'  +  line		 assert  line[41:42]  ==  '  ',  \
'LOCUS  line  does  not  contain  space  at  position  42:\n'  +  line
assert  line[55:63].strip()  in  ['','linear','circular'],  \
'LOCUS  line  does  not  contain  valid  entry  (linear,  circular,  ...):\n'  +  line		 assert  line[42:51].strip()  in  ['','linear','circular'],  \
'LOCUS  line  does  not  contain  valid  entry  (linear,  circular,  ...):\n'  +  line


Clone # 1161
Anti-unification distance between two trees = 3
Total size of two trees = 34
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 261		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 249
def  start_sequence_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_range_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_sequence_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_range_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_sequence_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_range_contents_multiline(  self,  text,  attrs  ):
self.save_characters()


Clone # 1162
Anti-unification distance between two trees = 3
Total size of two trees = 34
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 261		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/__init__.py"
The first line is 237
def  start_sequence_tag(  self,  text,  attrs  ):
self.save_characters()		 def  start_representative_tag(  self,  text,  attrs  ):
self.save_characters()
def  end_sequence_tag(  self,  cdd_record  ):
key  =  self.save_key()		 def  end_representative_tag(  self,  cdd_record  ):
key  =  self.save_key()
def  start_sequence_contents_multiline(  self,  text,  attrs  ):
self.save_characters()		 def  start_representative_contents_multiline(  self,  text,  attrs  ):
self.save_characters()


Clone # 1163
Anti-unification distance between two trees = 3
Total size of two trees = 34
Total length of sequences = 6
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIWWW.py"
The first line is 651		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 707
attempt_read_and_call(uhandle,  consumer.frameshift,  start='frameshift') attempt_read_and_call(uhandle,  consumer.frameshift,  start='frameshift')
attempt_read_and_call(uhandle,  consumer.threshold,  start='T') attempt_read_and_call(uhandle,  consumer.threshold,  start='T')
read_and_call(uhandle,  consumer.window_size,  start='A') attempt_read_and_call(uhandle,  consumer.threshold,  start='Neighboring  words  threshold')


Clone # 1164
Anti-unification distance between two trees = 3
Total size of two trees = 34
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 20		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 7
def  llinks(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "llinks",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_llinks(infile)		 def  prlinks(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "prlinks",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_prlinks(infile)


Clone # 1165
Anti-unification distance between two trees = 4
Total size of two trees = 34
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 57		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 20
def  neighbor_links(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "neighbor",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_neighbor_links(infile)		 def  llinks(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "llinks",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_llinks(infile)


Clone # 1166
Anti-unification distance between two trees = 3
Total size of two trees = 33
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 33		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 20
def  lcheck(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "lcheck",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_lcheck(infile)		 def  llinks(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "llinks",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_llinks(infile)


Clone # 1167
Anti-unification distance between two trees = 3
Total size of two trees = 33
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 57		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 45
def  neighbor_links(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "neighbor",
term  =  term,
field  =  field,
daterange  =  daterange)<BR> return  parse.parse_neighbor_links(infile)</span>		 def  ncheck(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "ncheck",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_ncheck(infile)</span>


Clone # 1168
Anti-unification distance between two trees = 3
Total size of two trees = 33
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 33		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 7
def  lcheck(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "lcheck",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_lcheck(infile)		 def  prlinks(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "prlinks",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_prlinks(infile)


Clone # 1169
Anti-unification distance between two trees = 3
Total size of two trees = 33
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 45		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 20
def  ncheck(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "ncheck",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_ncheck(infile)		 def  llinks(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "llinks",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_llinks(infile)


Clone # 1170
Anti-unification distance between two trees = 3
Total size of two trees = 33
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 57		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 33
def  neighbor_links(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "neighbor",
term  =  term,
field  =  field,
daterange  =  daterange)<BR> return  parse.parse_neighbor_links(infile)</span>		 def  lcheck(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "lcheck",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_lcheck(infile)</span>


Clone # 1171
Anti-unification distance between two trees = 3
Total size of two trees = 33
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 45		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 7
def  ncheck(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "ncheck",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_ncheck(infile)		 def  prlinks(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "prlinks",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_prlinks(infile)


Clone # 1172
Anti-unification distance between two trees = 1
Total size of two trees = 32
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 214		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 159
class  RecordParser:
def  __init__(self):
self._scanner  =  _Scanner()
self._consumer  =  _RecordConsumer()
def  parse(self,  handle):
self._scanner.feed(handle,  self._consumer)
return  self._consumer.data		 class  RecordParser:
def  __init__(self):
self._scanner  =  _Scanner()
self._consumer  =  _RecordConsumer()
def  parse(self,  handle):
self._scanner.feed(handle,  self._consumer)
return  self._consumer.data


Clone # 1173
Anti-unification distance between two trees = 3
Total size of two trees = 32
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1305		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1323
def  effective_query_length(self,  line):
self._params.effective_query_length,  =  _get_cols(
line,  (-1,),  ncols=5,  expected={1:"length",  3:"query:"})
self._params.effective_query_length  =  _safe_int(
self._params.effective_query_length)		 def  effective_search_space_used(self,  line):
self._params.effective_search_space_used,  =  _get_cols(
line,  (-1,),  ncols=5,  expected={1:"search",  3:"used:"})
self._params.effective_search_space_used  =  _safe_int(
self._params.effective_search_space_used)


Clone # 1174
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 211		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 210
self._scan_methylation(  text,  consumer) self._scan_sequence(  text,  consumer)
self._scan_enzyme_num(  text,  consumer  ) self._scan_methylation(  text,  consumer)
self._scan_prototype(  text,  consumer  ) self._scan_enzyme_num(  text,  consumer  )
self._scan_source(  text,  consumer  ) self._scan_prototype(  text,  consumer  )


Clone # 1175
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 215		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 214
self._scan_microorganism(  text,  consumer  ) self._scan_source(  text,  consumer  )
self._scan_temperature(  text,  consumer) self._scan_microorganism(  text,  consumer  )
self._scan_date_entered(  text,  consumer) self._scan_temperature(  text,  consumer)
self._scan_date_modified(  text,  consumer) self._scan_date_entered(  text,  consumer)


Clone # 1176
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 219		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 218
self._scan_Adeno2(  text,  consumer) self._scan_date_modified(  text,  consumer)
self._scan_Lambda(  text,  consumer) self._scan_Adeno2(  text,  consumer)
self._scan_pBR322(  text,  consumer) self._scan_Lambda(  text,  consumer)
self._scan_PhiX174(  text,  consumer) self._scan_pBR322(  text,  consumer)


Clone # 1177
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 212		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 210
self._scan_enzyme_num(  text,  consumer  ) self._scan_sequence(  text,  consumer)
self._scan_prototype(  text,  consumer  ) self._scan_methylation(  text,  consumer)
self._scan_source(  text,  consumer  ) self._scan_enzyme_num(  text,  consumer  )
self._scan_microorganism(  text,  consumer  ) self._scan_prototype(  text,  consumer  )


Clone # 1178
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 216		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 214
self._scan_temperature(  text,  consumer) self._scan_source(  text,  consumer  )
self._scan_date_entered(  text,  consumer) self._scan_microorganism(  text,  consumer  )
self._scan_date_modified(  text,  consumer) self._scan_temperature(  text,  consumer)
self._scan_Adeno2(  text,  consumer) self._scan_date_entered(  text,  consumer)


Clone # 1179
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 220		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 218
self._scan_Lambda(  text,  consumer) self._scan_date_modified(  text,  consumer)
self._scan_pBR322(  text,  consumer) self._scan_Adeno2(  text,  consumer)
self._scan_PhiX174(  text,  consumer) self._scan_Lambda(  text,  consumer)
self._scan_SV40(  text,  consumer) self._scan_pBR322(  text,  consumer)


Clone # 1180
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 16		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 14
set_prop[IUPAC.IUPACAmbiguousDNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_dna_weights		 set_prop[IUPAC.IUPACUnambiguousDNA]["weight_table"]  =  \
IUPACData.unambiguous_dna_weights
set_prop[IUPAC.IUPACUnambiguousRNA]["weight_table"]  =  \
IUPACData.unambiguous_rna_weights		 set_prop[IUPAC.IUPACAmbiguousDNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_dna_weights


Clone # 1181
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 20		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 18
set_prop[IUPAC.IUPACAmbiguousRNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_rna_weights		 set_prop[IUPAC.IUPACUnambiguousRNA]["weight_table"]  =  \
IUPACData.unambiguous_rna_weights
set_prop[IUPAC.IUPACProtein]["weight_table"]  =  \
IUPACData.protein_weights		 set_prop[IUPAC.IUPACAmbiguousRNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_rna_weights


Clone # 1182
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 27
set_prop[IUPAC.IUPACAmbiguousDNA]["weight_range_table"]  =  \
IUPACData.ambiguous_dna_weight_ranges		 set_prop[IUPAC.IUPACUnambiguousDNA]["weight_range_table"]  =  \
IUPACData.unambiguous_dna_weight_ranges
set_prop[IUPAC.IUPACUnambiguousRNA]["weight_range_table"]  =  \
IUPACData.unambiguous_rna_weight_ranges		 set_prop[IUPAC.IUPACAmbiguousDNA]["weight_range_table"]  =  \
IUPACData.ambiguous_dna_weight_ranges


Clone # 1183
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 33		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 31
set_prop[IUPAC.IUPACAmbiguousRNA]["weight_range_table"]  =  \
IUPACData.ambiguous_rna_weight_ranges		 set_prop[IUPAC.IUPACUnambiguousRNA]["weight_range_table"]  =  \
IUPACData.unambiguous_rna_weight_ranges
set_prop[IUPAC.IUPACProtein]["weight_range_table"]  =  \
IUPACData.protein_weight_ranges		 set_prop[IUPAC.IUPACAmbiguousRNA]["weight_range_table"]  =  \
IUPACData.ambiguous_rna_weight_ranges


Clone # 1184
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 18		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 14
set_prop[IUPAC.IUPACUnambiguousRNA]["weight_table"]  =  \
IUPACData.unambiguous_rna_weights		 set_prop[IUPAC.IUPACUnambiguousDNA]["weight_table"]  =  \
IUPACData.unambiguous_dna_weights
set_prop[IUPAC.IUPACAmbiguousRNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_rna_weights		 set_prop[IUPAC.IUPACAmbiguousDNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_dna_weights


Clone # 1185
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 22		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 18
set_prop[IUPAC.IUPACProtein]["weight_table"]  =  \
IUPACData.protein_weights		 set_prop[IUPAC.IUPACUnambiguousRNA]["weight_table"]  =  \
IUPACData.unambiguous_rna_weights
set_prop[IUPAC.ExtendedIUPACProtein]["weight_table"]  =  \
IUPACData.avg_extended_protein_weights		 set_prop[IUPAC.IUPACAmbiguousRNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_rna_weights


Clone # 1186
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 27
set_prop[IUPAC.IUPACUnambiguousRNA]["weight_range_table"]  =  \
IUPACData.unambiguous_rna_weight_ranges		 set_prop[IUPAC.IUPACUnambiguousDNA]["weight_range_table"]  =  \
IUPACData.unambiguous_dna_weight_ranges
set_prop[IUPAC.IUPACAmbiguousRNA]["weight_range_table"]  =  \
IUPACData.ambiguous_rna_weight_ranges		 set_prop[IUPAC.IUPACAmbiguousDNA]["weight_range_table"]  =  \
IUPACData.ambiguous_dna_weight_ranges


Clone # 1187
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 35		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 31
set_prop[IUPAC.IUPACProtein]["weight_range_table"]  =  \
IUPACData.protein_weight_ranges		 set_prop[IUPAC.IUPACUnambiguousRNA]["weight_range_table"]  =  \
IUPACData.unambiguous_rna_weight_ranges
set_prop[IUPAC.ExtendedIUPACProtein]["weight_range_table"]  =  \
IUPACData.extended_protein_weight_ranges		 set_prop[IUPAC.IUPACAmbiguousRNA]["weight_range_table"]  =  \
IUPACData.ambiguous_rna_weight_ranges


Clone # 1188
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 20		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 14
set_prop[IUPAC.IUPACAmbiguousRNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_rna_weights		 set_prop[IUPAC.IUPACUnambiguousDNA]["weight_table"]  =  \
IUPACData.unambiguous_dna_weights
set_prop[IUPAC.IUPACProtein]["weight_table"]  =  \
IUPACData.protein_weights		 set_prop[IUPAC.IUPACAmbiguousDNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_dna_weights


Clone # 1189
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 33		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 27
set_prop[IUPAC.IUPACAmbiguousRNA]["weight_range_table"]  =  \
IUPACData.ambiguous_rna_weight_ranges		 set_prop[IUPAC.IUPACUnambiguousDNA]["weight_range_table"]  =  \
IUPACData.unambiguous_dna_weight_ranges
set_prop[IUPAC.IUPACProtein]["weight_range_table"]  =  \
IUPACData.protein_weight_ranges		 set_prop[IUPAC.IUPACAmbiguousDNA]["weight_range_table"]  =  \
IUPACData.ambiguous_dna_weight_ranges


Clone # 1190
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 22		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 14
set_prop[IUPAC.IUPACProtein]["weight_table"]  =  \
IUPACData.protein_weights		 set_prop[IUPAC.IUPACUnambiguousDNA]["weight_table"]  =  \
IUPACData.unambiguous_dna_weights
set_prop[IUPAC.ExtendedIUPACProtein]["weight_table"]  =  \
IUPACData.avg_extended_protein_weights		 set_prop[IUPAC.IUPACAmbiguousDNA]["weight_table"]  =  \
IUPACData.avg_ambiguous_dna_weights


Clone # 1191
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 35		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Encodings/IUPACEncoding.py"
The first line is 27
set_prop[IUPAC.IUPACProtein]["weight_range_table"]  =  \
IUPACData.protein_weight_ranges		 set_prop[IUPAC.IUPACUnambiguousDNA]["weight_range_table"]  =  \
IUPACData.unambiguous_dna_weight_ranges
set_prop[IUPAC.ExtendedIUPACProtein]["weight_range_table"]  =  \
IUPACData.extended_protein_weight_ranges		 set_prop[IUPAC.IUPACAmbiguousDNA]["weight_range_table"]  =  \
IUPACData.ambiguous_dna_weight_ranges


Clone # 1192
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Decode.py"
The first line is 153		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Decode.py"
The first line is 157
class  Integer(ValueToken):
def  __init__(self,  val):
ValueToken.__init__(self,  "integer",  val)		 class  Float(ValueToken):
def  __init__(self,  val):
ValueToken.__init__(self,  "float",  val)
class  Float(ValueToken):
def  __init__(self,  val):
ValueToken.__init__(self,  "float",  val)		 class  String(ValueToken):
def  __init__(self,  val):
ValueToken.__init__(self,  "string",  val)


Clone # 1193
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 190		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 189
output  +=  self._accession_line() output  +=  self._definition_line()
output  +=  self._version_line() output  +=  self._accession_line()
output  +=  self._nid_line() output  +=  self._version_line()
output  +=  self._pid_line() output  +=  self._nid_line()


Clone # 1194
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 194		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 193
output  +=  self._keywords_line() output  +=  self._pid_line()
output  +=  self._db_source_line() output  +=  self._keywords_line()
output  +=  self._segment_line() output  +=  self._db_source_line()
output  +=  self._source_line() output  +=  self._segment_line()


Clone # 1195
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 191		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 189
output  +=  self._version_line() output  +=  self._definition_line()
output  +=  self._nid_line() output  +=  self._accession_line()
output  +=  self._pid_line() output  +=  self._version_line()
output  +=  self._keywords_line() output  +=  self._nid_line()


Clone # 1196
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 195		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 193
output  +=  self._db_source_line() output  +=  self._pid_line()
output  +=  self._segment_line() output  +=  self._keywords_line()
output  +=  self._source_line() output  +=  self._db_source_line()
output  +=  self._organism_line() output  +=  self._segment_line()


Clone # 1197
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 93		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 104
self.abstract_author  =  '' self.journal_title_code  =  ''
self.english_abstract  =  '' self.title_abbreviation  =  ''
self.source  =  '' self.issn  =  ''
self.publication_types  =  [] self.journal_subsets  =  []


Clone # 1198
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 98		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 108
self.number_of_references  =  '' self.country  =  ''
self.authors  =  [] self.languages  =  []
self.no_author  =  '' self.title  =  ''
self.address  =  '' self.transliterated_title  =  ''


Clone # 1199
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 64		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 60
self.prototype  =  '' self.seq_5_to_3  =  ''
self.source  =  '' self.seq_3_to_5  =  ''
self.microorganism  =  '' self.methylation  =  ''
self.temperature  =  None self.enzyme_num  =  None


Clone # 1200
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 95		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 117
self.description  =  '' self.year  =  ''
self.gene_name  =  '' self.pagination  =  ''
self.organism  =  '' self.special_list  =  ''
self.organelle  =  '' self.substance_name  =  ''


Clone # 1201
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.organism_classification  =  [] self.gene_symbols  =  []
self.taxonomy_id  =  [] self.secondary_source_ids  =  []
self.host_organism  =  [] self.identifications  =  []
self.references  =  [] self.registry_numbers  =  []


Clone # 1202
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 248		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 117
self.restr_expr      =  ''    #  RESTR_EXPR  line self.year  =  ''
self.gnm_terminus  =  ''    #  GNM_TERMINUS  line self.pagination  =  ''
self.gene_id &nbsp; &nbsp;        =  ''    #  GENE_ID  line self.special_list  =  ''
self.chromosome      =  ''    #  CHROMOSOME self.substance_name  =  ''


Clone # 1203
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 252		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.protsim            =  []    #  PROTSIM  entries,  array  of  Protsims self.gene_symbols  =  []
self.sequence &nbsp;        =  []    #  SEQUENCE  entries,  array  of  Sequence  entries self.secondary_source_ids  =  []
self.sts                    =  []    #  STS  entries,  array  of  STS  entries self.identifications  =  []
self.txmap &nbsp;              =  []    #  TXMAP  entries,  array  of  TXMap  entries self.registry_numbers  =  []


Clone # 1204
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 248		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 95
self.restr_expr &nbsp;    =  ''    #  RESTR_EXPR  line self.description  =  ''
self.gnm_terminus  =  ''    #  GNM_TERMINUS  line self.gene_name  =  ''
self.gene_id &nbsp;          =  ''    #  GENE_ID  line self.organism  =  ''
self.chromosome      =  ''    #  CHROMOSOME self.organelle  =  ''


Clone # 1205
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 252		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99
self.protsim &nbsp;          =  []    #  PROTSIM  entries,  array  of  Protsims self.organism_classification  =  []
self.sequence          =  []    #  SEQUENCE  entries,  array  of  Sequence  entries self.taxonomy_id  =  []
self.sts                    =  []    #  STS  entries,  array  of  STS  entries self.host_organism  =  []
self.txmap &nbsp;              =  []    #  TXMAP  entries,  array  of  TXMap  entries self.references  =  []


Clone # 1206
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 106		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/web_parse.py"
The first line is 214
self.issn  =  '' self.local_title  =  ''
self.journal_subsets  =  [] self.structure_stack  =  []
self.country  =  '' self.category  =  ''
self.languages  =  [] self.context_chain  =  []


Clone # 1207
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 35		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 157
self.pdbid  =  '' self.pid  =  ''
self.header  =  '' self.version  =  ''
self.compnd  =  '' self.db_source  =  ''
self.source  =  '' self.gi  =  ''


Clone # 1208
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 35		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 151
self.pdbid  =  '' self.residue_type  =  ''
self.header  =  '' self.data_file_division  =  ''
self.compnd  =  '' self.date  =  ''
self.source  =  '' self.definition  =  ''


Clone # 1209
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 35		Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 243
self.pdbid  =  '' self.species &nbsp;          =  ''    #  Hs,  Bt,  etc.
self.header  =  '' self.title                =  ''    #  TITLE  line
self.compnd  =  '' self.symbol &nbsp; &nbsp;          =  ''    #  GENE  line
self.source  =  '' self.cytoband &nbsp;        =  ''    #  CYTOBAND  line


Clone # 1210
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 242		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 150
self.ID &nbsp;                    =  ''    #  ID  line self.size  =  ''
self.species            =  ''    #  Hs,  Bt,  etc. self.residue_type  =  ''
self.title &nbsp;              =  ''    #  TITLE  line self.data_file_division  =  ''
self.symbol              =  ''    #  GENE  line self.date  =  ''


Clone # 1211
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 246		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 154
self.cytoband          =  ''    #  CYTOBAND  line self.definition  =  ''
self.express &nbsp;          =  []    #  EXPRESS  line,  parsed  on  ';' self.accession  =  []
self.restr_expr &nbsp;    =  ''    #  RESTR_EXPR  line self.nid  =  ''
self.gnm_terminus  =  ''    #  GNM_TERMINUS  line self.pid  =  ''


Clone # 1212
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 156		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 150
self.nid  =  '' self.size  =  ''
self.pid  =  '' self.residue_type  =  ''
self.version  =  '' self.data_file_division  =  ''
self.db_source  =  '' self.date  =  ''


Clone # 1213
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 160		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 154
self.gi  =  '' self.definition  =  ''
self.keywords  =  [] self.accession  =  []
self.segment  =  '' self.nid  =  ''
self.source  =  '' self.pid  =  ''


Clone # 1214
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 156		Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 242
self.nid  =  '' self.ID &nbsp;                    =  ''    #  ID  line
self.pid  =  '' self.species            =  ''    #  Hs,  Bt,  etc.
self.version  =  '' self.title &nbsp; &nbsp;            =  ''    #  TITLE  line
self.db_source  =  '' self.symbol &nbsp;            =  ''    #  GENE  line


Clone # 1215
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 160		Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 246
self.gi  =  '' self.cytoband          =  ''    #  CYTOBAND  line
self.keywords  =  [] self.express            =  []    #  EXPRESS  line,  parsed  on  ';'
self.segment  =  '' self.restr_expr &nbsp;    =  ''    #  RESTR_EXPR  line
self.source  =  '' self.gnm_terminus  =  ''    #  GNM_TERMINUS  line


Clone # 1216
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 101		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 150
self.no_author  =  '' self.size  =  ''
self.address  =  '' self.residue_type  =  ''
self.journal_title_code  =  '' self.data_file_division  =  ''
self.title_abbreviation  =  '' self.date  =  ''


Clone # 1217
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 101		Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 242
self.no_author  =  '' self.ID &nbsp;                    =  ''    #  ID  line
self.address  =  '' self.species &nbsp;          =  ''    #  Hs,  Bt,  etc.
self.journal_title_code  =  '' self.title                =  ''    #  TITLE  line
self.title_abbreviation  =  '' self.symbol &nbsp; &nbsp; &nbsp;        =  ''    #  GENE  line


Clone # 1218
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 149
self.volume_issue  =  '' self.locus  =  ''
self.publication_date  =  '' self.size  =  ''
self.year  =  '' self.residue_type  =  ''
self.pagination  =  '' self.data_file_division  =  ''


Clone # 1219
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 106		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 149
self.created  =  '' self.locus  =  ''
self.data_update  =  '' self.size  =  ''
self.info_update  =  '' self.residue_type  =  ''
self.pdoc  =  '' self.data_file_division  =  ''


Clone # 1220
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103
self.transliterated_title  =  '' self.name  =  ''
self.call_number  =  '' self.type  =  ''
self.issue_part_supplement  =  '' self.accession  =  ''
self.volume_issue  =  '' self.created  =  ''


Clone # 1221
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 116		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107
self.publication_date  =  '' self.data_update  =  ''
self.year  =  '' self.info_update  =  ''
self.pagination  =  '' self.pdoc  =  ''
self.special_list  =  '' self.description  =  ''


Clone # 1222
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 92		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.plasmid_encoded  =  '' self.gene_class  =  ''
self.is_partial_gene  =  '' self.plasmid_encoded  =  ''
self.is_pseudo_gene  =  '' self.is_partial_gene  =  ''
self.is_transpliced_gene  =  '' self.is_pseudo_gene  =  ''


Clone # 1223
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 96		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.chloroplast_origin  =  '' self.is_transpliced_gene  =  ''
self.contains_intron  =  '' self.chloroplast_origin  =  ''
self.orf  =  '' self.contains_intron  =  ''
self.included_in_intron  =  '' self.orf  =  ''


Clone # 1224
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 100		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 99
self.published_info  =  '' self.included_in_intron  =  ''
self.genbank_accession  =  '' self.published_info  =  ''
self.entrez_record  =  '' self.genbank_accession  =  ''
self.product_type  =  '' self.entrez_record  =  ''


Clone # 1225
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 93		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.is_partial_gene  =  '' self.gene_class  =  ''
self.is_pseudo_gene  =  '' self.plasmid_encoded  =  ''
self.is_transpliced_gene  =  '' self.is_partial_gene  =  ''
self.chloroplast_origin  =  '' self.is_pseudo_gene  =  ''


Clone # 1226
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 97		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.contains_intron  =  '' self.is_transpliced_gene  =  ''
self.orf  =  '' self.chloroplast_origin  =  ''
self.included_in_intron  =  '' self.contains_intron  =  ''
self.published_info  =  '' self.orf  =  ''


Clone # 1227
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 101		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 99
self.genbank_accession  =  '' self.included_in_intron  =  ''
self.entrez_record  =  '' self.published_info  =  ''
self.product_type  =  '' self.genbank_accession  =  ''
self.product_class  =  '' self.entrez_record  =  ''


Clone # 1228
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 38
self.gap_threshold=0 self.query_length=0
self.query_length=0 self.query_filtered_length=0
self.query_filtered_length=0 self.query_nseqs=0
self.query_nseqs=0 self.query_neffseqs=0


Clone # 1229
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 42
self.query_neffseqs=0 self.hit_length=0
self.hit_length=0 self.hit_filtered_length=0
self.hit_filtered_length=0 self.hit_nseqs=0
self.hit_nseqs=0 self.hit_neffseqs=0


Clone # 1230
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 94		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.is_pseudo_gene  =  '' self.gene_class  =  ''
self.is_transpliced_gene  =  '' self.plasmid_encoded  =  ''
self.chloroplast_origin  =  '' self.is_partial_gene  =  ''
self.contains_intron  =  '' self.is_pseudo_gene  =  ''


Clone # 1231
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 98		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.orf  =  '' self.is_transpliced_gene  =  ''
self.included_in_intron  =  '' self.chloroplast_origin  =  ''
self.published_info  =  '' self.contains_intron  =  ''
self.genbank_accession  =  '' self.orf  =  ''


Clone # 1232
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 94
self.title  =  '' self.is_pseudo_gene  =  ''
self.transliterated_title  =  '' self.is_transpliced_gene  =  ''
self.call_number  =  '' self.chloroplast_origin  =  ''
self.issue_part_supplement  =  '' self.contains_intron  =  ''


Clone # 1233
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 98
self.volume_issue  =  '' self.orf  =  ''
self.publication_date  =  '' self.included_in_intron  =  ''
self.year  =  '' self.published_info  =  ''
self.pagination  =  '' self.genbank_accession  =  ''


Clone # 1234
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 93
self.title  =  '' self.is_partial_gene  =  ''
self.transliterated_title  =  '' self.is_pseudo_gene  =  ''
self.call_number  =  '' self.is_transpliced_gene  =  ''
self.issue_part_supplement  =  '' self.chloroplast_origin  =  ''


Clone # 1235
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 97
self.volume_issue  =  '' self.contains_intron  =  ''
self.publication_date  =  '' self.orf  =  ''
self.year  =  '' self.included_in_intron  =  ''
self.pagination  =  '' self.published_info  =  ''


Clone # 1236
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 92
self.title  =  '' self.plasmid_encoded  =  ''
self.transliterated_title  =  '' self.is_partial_gene  =  ''
self.call_number  =  '' self.is_pseudo_gene  =  ''
self.issue_part_supplement  =  '' self.is_transpliced_gene  =  ''


Clone # 1237
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 96
self.volume_issue  =  '' self.chloroplast_origin  =  ''
self.publication_date  =  '' self.contains_intron  =  ''
self.year  =  '' self.orf  =  ''
self.pagination  =  '' self.included_in_intron  =  ''


Clone # 1238
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.title  =  '' self.gene_class  =  ''
self.transliterated_title  =  '' self.plasmid_encoded  =  ''
self.call_number  =  '' self.is_partial_gene  =  ''
self.issue_part_supplement  =  '' self.is_pseudo_gene  =  ''


Clone # 1239
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.volume_issue  =  '' self.is_transpliced_gene  =  ''
self.publication_date  =  '' self.chloroplast_origin  =  ''
self.year  =  '' self.contains_intron  =  ''
self.pagination  =  '' self.orf  =  ''


Clone # 1240
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 39
self.gap_threshold=0 self.query_filtered_length=0
self.query_length=0 self.query_nseqs=0
self.query_filtered_length=0 self.query_neffseqs=0
self.query_nseqs=0 self.hit_length=0


Clone # 1241
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 41		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 43
self.query_neffseqs=0 self.hit_filtered_length=0
self.hit_length=0 self.hit_nseqs=0
self.hit_filtered_length=0 self.hit_neffseqs=0
self.hit_nseqs=0 self.sw_score=0


Clone # 1242
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111
self.is_transpliced_gene  =  '' self.title  =  ''
self.chloroplast_origin  =  '' self.transliterated_title  =  ''
self.contains_intron  =  '' self.call_number  =  ''
self.orf  =  '' self.issue_part_supplement  =  ''


Clone # 1243
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 99		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115
self.included_in_intron  =  '' self.volume_issue  =  ''
self.published_info  =  '' self.publication_date  =  ''
self.genbank_accession  =  '' self.year  =  ''
self.entrez_record  =  '' self.pagination  =  ''


Clone # 1244
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.is_transpliced_gene  =  '' self.gene_class  =  ''
self.chloroplast_origin  =  '' self.plasmid_encoded  =  ''
self.contains_intron  =  '' self.is_partial_gene  =  ''
self.orf  =  '' self.is_pseudo_gene  =  ''


Clone # 1245
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 99		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.included_in_intron  =  '' self.is_transpliced_gene  =  ''
self.published_info  =  '' self.chloroplast_origin  =  ''
self.genbank_accession  =  '' self.contains_intron  =  ''
self.entrez_record  =  '' self.orf  =  ''


Clone # 1246
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111
self.transliterated_title  =  '' self.title  =  ''
self.call_number  =  '' self.transliterated_title  =  ''
self.issue_part_supplement  =  '' self.call_number  =  ''
self.volume_issue  =  '' self.issue_part_supplement  =  ''


Clone # 1247
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 116		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115
self.publication_date  =  '' self.volume_issue  =  ''
self.year  =  '' self.publication_date  =  ''
self.pagination  =  '' self.year  =  ''
self.special_list  =  '' self.pagination  =  ''


Clone # 1248
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.transliterated_title  =  '' self.gene_class  =  ''
self.call_number  =  '' self.plasmid_encoded  =  ''
self.issue_part_supplement  =  '' self.is_partial_gene  =  ''
self.volume_issue  =  '' self.is_pseudo_gene  =  ''


Clone # 1249
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 116		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.publication_date  =  '' self.is_transpliced_gene  =  ''
self.year  =  '' self.chloroplast_origin  =  ''
self.pagination  =  '' self.contains_intron  =  ''
self.special_list  =  '' self.orf  =  ''


Clone # 1250
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.name  =  '' self.is_transpliced_gene  =  ''
self.type  =  '' self.chloroplast_origin  =  ''
self.accession  =  '' self.contains_intron  =  ''
self.created  =  '' self.orf  =  ''


Clone # 1251
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 99
self.data_update  =  '' self.included_in_intron  =  ''
self.info_update  =  '' self.published_info  =  ''
self.pdoc  =  '' self.genbank_accession  =  ''
self.description  =  '' self.entrez_record  =  ''


Clone # 1252
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111
self.name  =  '' self.title  =  ''
self.type  =  '' self.transliterated_title  =  ''
self.accession  =  '' self.call_number  =  ''
self.created  =  '' self.issue_part_supplement  =  ''


Clone # 1253
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115
self.data_update  =  '' self.volume_issue  =  ''
self.info_update  =  '' self.publication_date  =  ''
self.pdoc  =  '' self.year  =  ''
self.description  =  '' self.pagination  =  ''


Clone # 1254
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 94
self.name  =  '' self.is_pseudo_gene  =  ''
self.type  =  '' self.is_transpliced_gene  =  ''
self.accession  =  '' self.chloroplast_origin  =  ''
self.created  =  '' self.contains_intron  =  ''


Clone # 1255
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 98
self.data_update  =  '' self.orf  =  ''
self.info_update  =  '' self.included_in_intron  =  ''
self.pdoc  =  '' self.published_info  =  ''
self.description  =  '' self.genbank_accession  =  ''


Clone # 1256
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 93
self.name  =  '' self.is_partial_gene  =  ''
self.type  =  '' self.is_pseudo_gene  =  ''
self.accession  =  '' self.is_transpliced_gene  =  ''
self.created  =  '' self.chloroplast_origin  =  ''


Clone # 1257
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 97
self.data_update  =  '' self.contains_intron  =  ''
self.info_update  =  '' self.orf  =  ''
self.pdoc  =  '' self.included_in_intron  =  ''
self.description  =  '' self.published_info  =  ''


Clone # 1258
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 92
self.name  =  '' self.plasmid_encoded  =  ''
self.type  =  '' self.is_partial_gene  =  ''
self.accession  =  '' self.is_pseudo_gene  =  ''
self.created  =  '' self.is_transpliced_gene  =  ''


Clone # 1259
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 96
self.data_update  =  '' self.chloroplast_origin  =  ''
self.info_update  =  '' self.contains_intron  =  ''
self.pdoc  =  '' self.orf  =  ''
self.description  =  '' self.included_in_intron  =  ''


Clone # 1260
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.name  =  '' self.gene_class  =  ''
self.type  =  '' self.plasmid_encoded  =  ''
self.accession  =  '' self.is_partial_gene  =  ''
self.created  =  '' self.is_pseudo_gene  =  ''


Clone # 1261
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.data_update  =  '' self.is_transpliced_gene  =  ''
self.info_update  =  '' self.chloroplast_origin  =  ''
self.pdoc  =  '' self.contains_intron  =  ''
self.description  =  '' self.orf  =  ''


Clone # 1262
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 40
self.gap_threshold=0 self.query_nseqs=0
self.query_length=0 self.query_neffseqs=0
self.query_filtered_length=0 self.hit_length=0
self.query_nseqs=0 self.hit_filtered_length=0


Clone # 1263
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 96
self.number  =  '' self.chloroplast_origin  =  ''
self.bases  =  '' self.contains_intron  =  ''
self.authors  =  '' self.orf  =  ''
self.consrtm  =  '' self.included_in_intron  =  ''


Clone # 1264
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 100
self.title  =  '' self.published_info  =  ''
self.journal  =  '' self.genbank_accession  =  ''
self.medline_id  =  '' self.entrez_record  =  ''
self.pubmed_id  =  '' self.product_type  =  ''


Clone # 1265
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 112
self.number  =  '' self.transliterated_title  =  ''
self.bases  =  '' self.call_number  =  ''
self.authors  =  '' self.issue_part_supplement  =  ''
self.consrtm  =  '' self.volume_issue  =  ''


Clone # 1266
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 116
self.title  =  '' self.publication_date  =  ''
self.journal  =  '' self.year  =  ''
self.medline_id  =  '' self.pagination  =  ''
self.pubmed_id  =  '' self.special_list  =  ''


Clone # 1267
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111
self.number  =  '' self.title  =  ''
self.bases  =  '' self.transliterated_title  =  ''
self.authors  =  '' self.call_number  =  ''
self.consrtm  =  '' self.issue_part_supplement  =  ''


Clone # 1268
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115
self.title  =  '' self.volume_issue  =  ''
self.journal  =  '' self.publication_date  =  ''
self.medline_id  =  '' self.year  =  ''
self.pubmed_id  =  '' self.pagination  =  ''


Clone # 1269
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.number  =  '' self.is_transpliced_gene  =  ''
self.bases  =  '' self.chloroplast_origin  =  ''
self.authors  =  '' self.contains_intron  =  ''
self.consrtm  =  '' self.orf  =  ''


Clone # 1270
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 99
self.title  =  '' self.included_in_intron  =  ''
self.journal  =  '' self.published_info  =  ''
self.medline_id  =  '' self.genbank_accession  =  ''
self.pubmed_id  =  '' self.entrez_record  =  ''


Clone # 1271
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 94
self.number  =  '' self.is_pseudo_gene  =  ''
self.bases  =  '' self.is_transpliced_gene  =  ''
self.authors  =  '' self.chloroplast_origin  =  ''
self.consrtm  =  '' self.contains_intron  =  ''


Clone # 1272
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 98
self.title  =  '' self.orf  =  ''
self.journal  =  '' self.included_in_intron  =  ''
self.medline_id  =  '' self.published_info  =  ''
self.pubmed_id  =  '' self.genbank_accession  =  ''


Clone # 1273
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 93
self.number  =  '' self.is_partial_gene  =  ''
self.bases  =  '' self.is_pseudo_gene  =  ''
self.authors  =  '' self.is_transpliced_gene  =  ''
self.consrtm  =  '' self.chloroplast_origin  =  ''


Clone # 1274
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 97
self.title  =  '' self.contains_intron  =  ''
self.journal  =  '' self.orf  =  ''
self.medline_id  =  '' self.included_in_intron  =  ''
self.pubmed_id  =  '' self.published_info  =  ''


Clone # 1275
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 92
self.number  =  '' self.plasmid_encoded  =  ''
self.bases  =  '' self.is_partial_gene  =  ''
self.authors  =  '' self.is_pseudo_gene  =  ''
self.consrtm  =  '' self.is_transpliced_gene  =  ''


Clone # 1276
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 96
self.title  =  '' self.chloroplast_origin  =  ''
self.journal  =  '' self.contains_intron  =  ''
self.medline_id  =  '' self.orf  =  ''
self.pubmed_id  =  '' self.included_in_intron  =  ''


Clone # 1277
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.number  =  '' self.gene_class  =  ''
self.bases  =  '' self.plasmid_encoded  =  ''
self.authors  =  '' self.is_partial_gene  =  ''
self.consrtm  =  '' self.is_pseudo_gene  =  ''


Clone # 1278
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.title  =  '' self.is_transpliced_gene  =  ''
self.journal  =  '' self.chloroplast_origin  =  ''
self.medline_id  =  '' self.contains_intron  =  ''
self.pubmed_id  =  '' self.orf  =  ''


Clone # 1279
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103
self.number  =  '' self.name  =  ''
self.bases  =  '' self.type  =  ''
self.authors  =  '' self.accession  =  ''
self.consrtm  =  '' self.created  =  ''


Clone # 1280
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107
self.title  =  '' self.data_update  =  ''
self.journal  =  '' self.info_update  =  ''
self.medline_id  =  '' self.pdoc  =  ''
self.pubmed_id  =  '' self.description  =  ''


Clone # 1281
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 96		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111
self.chloroplast_origin  =  '' self.title  =  ''
self.contains_intron  =  '' self.transliterated_title  =  ''
self.orf  =  '' self.call_number  =  ''
self.included_in_intron  =  '' self.issue_part_supplement  =  ''


Clone # 1282
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 100		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115
self.published_info  =  '' self.volume_issue  =  ''
self.genbank_accession  =  '' self.publication_date  =  ''
self.entrez_record  =  '' self.year  =  ''
self.product_type  =  '' self.pagination  =  ''


Clone # 1283
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 96		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.chloroplast_origin  =  '' self.gene_class  =  ''
self.contains_intron  =  '' self.plasmid_encoded  =  ''
self.orf  =  '' self.is_partial_gene  =  ''
self.included_in_intron  =  '' self.is_pseudo_gene  =  ''


Clone # 1284
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 100		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.published_info  =  '' self.is_transpliced_gene  =  ''
self.genbank_accession  =  '' self.chloroplast_origin  =  ''
self.entrez_record  =  '' self.contains_intron  =  ''
self.product_type  =  '' self.orf  =  ''


Clone # 1285
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 96		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103
self.chloroplast_origin  =  '' self.name  =  ''
self.contains_intron  =  '' self.type  =  ''
self.orf  =  '' self.accession  =  ''
self.included_in_intron  =  '' self.created  =  ''


Clone # 1286
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 100		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107
self.published_info  =  '' self.data_update  =  ''
self.genbank_accession  =  '' self.info_update  =  ''
self.entrez_record  =  '' self.pdoc  =  ''
self.product_type  =  '' self.description  =  ''


Clone # 1287
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 223		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 38
self.id_size &nbsp;=  0 self.query_length=0
self.space_size &nbsp;=  0 self.query_filtered_length=0
self.seq_size  =  0 self.query_nseqs=0
self.in_version &nbsp;=  0 self.query_neffseqs=0


Clone # 1288
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 229		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 42
self.in_stars  =  0 self.hit_length=0
self.in_seq_id  =  0 self.hit_filtered_length=0
self.in_space &nbsp;=  0 self.hit_nseqs=0
self.in_seq &nbsp;=  0 self.hit_neffseqs=0


Clone # 1289
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 223		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 37
self.id_size  =  0 self.gap_threshold=0
self.space_size &nbsp;=  0 self.query_length=0
self.seq_size &nbsp;=  0 self.query_filtered_length=0
self.in_version &nbsp;=  0 self.query_nseqs=0


Clone # 1290
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 229		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 41
self.in_stars  =  0 self.query_neffseqs=0
self.in_seq_id  =  0 self.hit_length=0
self.in_space  =  0 self.hit_filtered_length=0
self.in_seq &nbsp;=  0 self.hit_nseqs=0


Clone # 1291
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 224		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 37
self.space_size  =  0 self.gap_threshold=0
self.seq_size &nbsp;=  0 self.query_length=0
self.in_version  =  0 self.query_filtered_length=0
self.in_stars  =  0 self.query_nseqs=0


Clone # 1292
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 225		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 37
self.seq_size  =  0 self.gap_threshold=0
self.in_version  =  0 self.query_length=0
self.in_stars  =  0 self.query_filtered_length=0
self.in_seq_id &nbsp;=  0 self.query_nseqs=0


Clone # 1293
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 113		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462
self.call_number  =  '' self.number  =  ''
self.issue_part_supplement  =  '' self.bases  =  ''
self.volume_issue  =  '' self.authors  =  ''
self.publication_date  =  '' self.consrtm  =  ''


Clone # 1294
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466
self.year  =  '' self.title  =  ''
self.pagination  =  '' self.journal  =  ''
self.special_list  =  '' self.medline_id  =  ''
self.substance_name  =  '' self.pubmed_id  =  ''


Clone # 1295
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 113		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111
self.call_number  =  '' self.title  =  ''
self.issue_part_supplement  =  '' self.transliterated_title  =  ''
self.volume_issue  =  '' self.call_number  =  ''
self.publication_date  =  '' self.issue_part_supplement  =  ''


Clone # 1296
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115
self.year  =  '' self.volume_issue  =  ''
self.pagination  =  '' self.publication_date  =  ''
self.special_list  =  '' self.year  =  ''
self.substance_name  =  '' self.pagination  =  ''


Clone # 1297
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 113		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.call_number  =  '' self.gene_class  =  ''
self.issue_part_supplement  =  '' self.plasmid_encoded  =  ''
self.volume_issue  =  '' self.is_partial_gene  =  ''
self.publication_date  =  '' self.is_pseudo_gene  =  ''


Clone # 1298
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.year  =  '' self.is_transpliced_gene  =  ''
self.pagination  =  '' self.chloroplast_origin  =  ''
self.special_list  =  '' self.contains_intron  =  ''
self.substance_name  =  '' self.orf  =  ''


Clone # 1299
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 113		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103
self.call_number  =  '' self.name  =  ''
self.issue_part_supplement  =  '' self.type  =  ''
self.volume_issue  =  '' self.accession  =  ''
self.publication_date  =  '' self.created  =  ''


Clone # 1300
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 117		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107
self.year  =  '' self.data_update  =  ''
self.pagination  =  '' self.info_update  =  ''
self.special_list  =  '' self.pdoc  =  ''
self.substance_name  =  '' self.description  =  ''


Clone # 1301
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 104		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462
self.type  =  '' self.number  =  ''
self.accession  =  '' self.bases  =  ''
self.created  =  '' self.authors  =  ''
self.data_update  =  '' self.consrtm  =  ''


Clone # 1302
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 108		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466
self.info_update  =  '' self.title  =  ''
self.pdoc  =  '' self.journal  =  ''
self.description  =  '' self.medline_id  =  ''
self.pattern  =  '' self.pubmed_id  =  ''


Clone # 1303
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 104		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111
self.type  =  '' self.title  =  ''
self.accession  =  '' self.transliterated_title  =  ''
self.created  =  '' self.call_number  =  ''
self.data_update  =  '' self.issue_part_supplement  =  ''


Clone # 1304
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 108		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115
self.info_update  =  '' self.volume_issue  =  ''
self.pdoc  =  '' self.publication_date  =  ''
self.description  =  '' self.year  =  ''
self.pattern  =  '' self.pagination  =  ''


Clone # 1305
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 104		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.type  =  '' self.gene_class  =  ''
self.accession  =  '' self.plasmid_encoded  =  ''
self.created  =  '' self.is_partial_gene  =  ''
self.data_update  =  '' self.is_pseudo_gene  =  ''


Clone # 1306
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 108		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.info_update  =  '' self.is_transpliced_gene  =  ''
self.pdoc  =  '' self.chloroplast_origin  =  ''
self.description  =  '' self.contains_intron  =  ''
self.pattern  =  '' self.orf  =  ''


Clone # 1307
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 104		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103
self.type  =  '' self.name  =  ''
self.accession  =  '' self.type  =  ''
self.created  =  '' self.accession  =  ''
self.data_update  =  '' self.created  =  ''


Clone # 1308
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 108		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107
self.info_update  =  '' self.data_update  =  ''
self.pdoc  =  '' self.info_update  =  ''
self.description  =  '' self.pdoc  =  ''
self.pattern  =  '' self.description  =  ''


Clone # 1309
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 223		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 39
self.id_size &nbsp;=  0 self.query_filtered_length=0
self.space_size  =  0 self.query_nseqs=0
self.seq_size  =  0 self.query_neffseqs=0
self.in_version  =  0 self.hit_length=0


Clone # 1310
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 229		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 43
self.in_stars  =  0 self.hit_filtered_length=0
self.in_seq_id &nbsp;=  0 self.hit_nseqs=0
self.in_space &nbsp;=  0 self.hit_neffseqs=0
self.in_seq  =  0 self.sw_score=0


Clone # 1311
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 37		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 41
self.gap_threshold=0 self.query_neffseqs=0
self.query_length=0 self.hit_length=0
self.query_filtered_length=0 self.hit_filtered_length=0
self.query_nseqs=0 self.hit_nseqs=0


Clone # 1312
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 463		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111
self.bases  =  '' self.title  =  ''
self.authors  =  '' self.transliterated_title  =  ''
self.consrtm  =  '' self.call_number  =  ''
self.title  =  '' self.issue_part_supplement  =  ''


Clone # 1313
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 467		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115
self.journal  =  '' self.volume_issue  =  ''
self.medline_id  =  '' self.publication_date  =  ''
self.pubmed_id  =  '' self.year  =  ''
self.remark  =  '' self.pagination  =  ''


Clone # 1314
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 463		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462
self.bases  =  '' self.number  =  ''
self.authors  =  '' self.bases  =  ''
self.consrtm  =  '' self.authors  =  ''
self.title  =  '' self.consrtm  =  ''


Clone # 1315
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 467		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466
self.journal  =  '' self.title  =  ''
self.medline_id  =  '' self.journal  =  ''
self.pubmed_id  =  '' self.medline_id  =  ''
self.remark  =  '' self.pubmed_id  =  ''


Clone # 1316
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 463		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.bases  =  '' self.gene_class  =  ''
self.authors  =  '' self.plasmid_encoded  =  ''
self.consrtm  =  '' self.is_partial_gene  =  ''
self.title  =  '' self.is_pseudo_gene  =  ''


Clone # 1317
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 467		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.journal  =  '' self.is_transpliced_gene  =  ''
self.medline_id  =  '' self.chloroplast_origin  =  ''
self.pubmed_id  =  '' self.contains_intron  =  ''
self.remark  =  '' self.orf  =  ''


Clone # 1318
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 463		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103
self.bases  =  '' self.name  =  ''
self.authors  =  '' self.type  =  ''
self.consrtm  =  '' self.accession  =  ''
self.title  =  '' self.created  =  ''


Clone # 1319
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 467		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107
self.journal  =  '' self.data_update  =  ''
self.medline_id  =  '' self.info_update  =  ''
self.pubmed_id  =  '' self.pdoc  =  ''
self.remark  =  '' self.description  =  ''


Clone # 1320
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 97		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 111
self.contains_intron  =  '' self.title  =  ''
self.orf  =  '' self.transliterated_title  =  ''
self.included_in_intron  =  '' self.call_number  =  ''
self.published_info  =  '' self.issue_part_supplement  =  ''


Clone # 1321
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 101		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 115
self.genbank_accession  =  '' self.volume_issue  =  ''
self.entrez_record  =  '' self.publication_date  =  ''
self.product_type  =  '' self.year  =  ''
self.product_class  =  '' self.pagination  =  ''


Clone # 1322
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 97		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 462
self.contains_intron  =  '' self.number  =  ''
self.orf  =  '' self.bases  =  ''
self.included_in_intron  =  '' self.authors  =  ''
self.published_info  =  '' self.consrtm  =  ''


Clone # 1323
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 101		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 466
self.genbank_accession  =  '' self.title  =  ''
self.entrez_record  =  '' self.journal  =  ''
self.product_type  =  '' self.medline_id  =  ''
self.product_class  =  '' self.pubmed_id  =  ''


Clone # 1324
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 97		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 91
self.contains_intron  =  '' self.gene_class  =  ''
self.orf  =  '' self.plasmid_encoded  =  ''
self.included_in_intron  =  '' self.is_partial_gene  =  ''
self.published_info  =  '' self.is_pseudo_gene  =  ''


Clone # 1325
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 101		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 95
self.genbank_accession  =  '' self.is_transpliced_gene  =  ''
self.entrez_record  =  '' self.chloroplast_origin  =  ''
self.product_type  =  '' self.contains_intron  =  ''
self.product_class  =  '' self.orf  =  ''


Clone # 1326
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 97		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 103
self.contains_intron  =  '' self.name  =  ''
self.orf  =  '' self.type  =  ''
self.included_in_intron  =  '' self.accession  =  ''
self.published_info  =  '' self.created  =  ''


Clone # 1327
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Gobase/__init__.py"
The first line is 101		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 107
self.genbank_accession  =  '' self.data_update  =  ''
self.entrez_record  =  '' self.info_update  =  ''
self.product_type  =  '' self.pdoc  =  ''
self.product_class  =  '' self.description  =  ''


Clone # 1328
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 230		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/Record.py"
The first line is 50
self.in_seq_id  =  0 self.num_systems  =  0
self.in_space  =  0 self.num_substances  =  0
self.in_seq  =  0 self.num_reactors  =  0
self.all_star_info  =  '' self.include_block  =  ''


Clone # 1329
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 228		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Compass/__init__.py"
The first line is 37
self.in_version  =  0 self.gap_threshold=0
self.in_stars  =  0 self.query_length=0
self.in_seq_id  =  0 self.query_filtered_length=0
self.in_space &nbsp;=  0 self.query_nseqs=0


Clone # 1330
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 224		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 223
self.space_size  =  0 self.id_size  =  0
self.seq_size  =  0 self.space_size  =  0
self.in_version  =  0 self.seq_size  =  0
self.in_stars  =  0 self.in_version  =  0


Clone # 1331
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 59		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 98
self.entry            =  "" self.organelle  =  ''
self.name &nbsp;            =  [] self.organism_classification  =  []
self.classname    =  [] self.taxonomy_id  =  []
self.sysname        =  [] self.host_organism  =  []


Clone # 1332
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 63		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 102
self.reaction &nbsp;    =  [] self.references  =  []
self.substrate    =  [] self.comments  =  []
self.product &nbsp;      =  [] self.cross_references  =  []
self.inhibitor &nbsp;  =  [] self.keywords  =  []


Clone # 1333
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 59		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 122
self.entry &nbsp; &nbsp; &nbsp;      =  "" self.substance_name  =  ''
self.name &nbsp;            =  [] self.gene_symbols  =  []
self.classname    =  [] self.secondary_source_ids  =  []
self.sysname        =  [] self.identifications  =  []


Clone # 1334
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 128		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 122
self.cc_skip_flag  =  '' self.substance_name  =  ''
self.dr_positive  =  [] self.gene_symbols  =  []
self.dr_false_neg  =  [] self.secondary_source_ids  =  []
self.dr_false_pos  =  [] self.identifications  =  []


Clone # 1335
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 128		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 98
self.cc_skip_flag  =  '' self.organelle  =  ''
self.dr_positive  =  [] self.organism_classification  =  []
self.dr_false_neg  =  [] self.taxonomy_id  =  []
self.dr_false_pos  =  [] self.host_organism  =  []


Clone # 1336
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 128		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 59
self.cc_skip_flag  =  '' self.entry &nbsp;          =  ""
self.dr_positive  =  [] self.name &nbsp; &nbsp;          =  []
self.dr_false_neg  =  [] self.classname &nbsp;  =  []
self.dr_false_pos  =  [] self.sysname &nbsp; &nbsp;    =  []


Clone # 1337
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 167		Source file "/home/peter/clone_digger/biopython-1.44/Bio/UniGene/__init__.py"
The first line is 246
self.comment  =  '' self.cytoband          =  ''    #  CYTOBAND  line
self.features  =  [] self.express            =  []    #  EXPRESS  line,  parsed  on  ';'
self.base_counts  =  '' self.restr_expr &nbsp; &nbsp;  =  ''    #  RESTR_EXPR  line
self.origin  =  '' self.gnm_terminus  =  ''    #  GNM_TERMINUS  line


Clone # 1338
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 98		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 154
self.number_of_references  =  '' self.definition  =  ''
self.authors  =  [] self.accession  =  []
self.no_author  =  '' self.nid  =  ''
self.address  =  '' self.pid  =  ''


Clone # 1339
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 104		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 158
self.journal_title_code  =  '' self.version  =  ''
self.title_abbreviation  =  '' self.db_source  =  ''
self.issn  =  '' self.gi  =  ''
self.journal_subsets  =  [] self.keywords  =  []


Clone # 1340
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 154		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 108
self.definition  =  '' self.country  =  ''
self.accession  =  [] self.languages  =  []
self.nid  =  '' self.title  =  ''
self.pid  =  '' self.transliterated_title  =  ''


Clone # 1341
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 473		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 188
output  =  self._reference_line() output  =  self._locus_line()
output  +=  self._authors_line() output  +=  self._definition_line()
output  +=  self._consrtm_line() output  +=  self._accession_line()
output  +=  self._title_line() output  +=  self._version_line()


Clone # 1342
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 477		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 192
output  +=  self._journal_line() output  +=  self._nid_line()
output  +=  self._medline_line() output  +=  self._pid_line()
output  +=  self._pubmed_line() output  +=  self._keywords_line()
output  +=  self._remark_line() output  +=  self._db_source_line()


Clone # 1343
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 82		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 81
self.kernel  =  PathwayTransform() self.stochiometric  =  PathwayTransform()
self.subsets  =  PathwayTransform() self.kernel  =  PathwayTransform()
self.reduced_system  =  PathwayTransform() self.subsets  =  PathwayTransform()
self.convex_basis  =  PathwayTransform() self.reduced_system  =  PathwayTransform()


Clone # 1344
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 112		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 114
out  =  out  +  '\n\nKernel\n\n' out  =  out  +  '\n\nSubsets\n\n'
out  =  out  +  str(  self.kernel  ) out  =  out  +  str(  self.subsets  )
out  =  out  +  '\n\nSubsets\n\n' out  =  out  +  '\n\nReduced &nbsp;System\n\n'
out  =  out  +  str(  self.subsets  ) out  =  out  +  str(  self.reduced_system  )


Clone # 1345
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 116		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 118
out  =  out  +  '\n\nReduced  System\n\n' out  =  out  +  '\n\nConvex  Basis\n\n'
out  =  out  +  str(  self.reduced_system  ) out  =  out  +  str(  self.convex_basis  )
out  =  out  +  '\n\nConvex  Basis\n\n' out  =  out  +  '\n\nConservation  Relations\n\n'
out  =  out  +  str(  self.convex_basis  ) out  =  out  +  str(  self.conservation_relations  )


Clone # 1346
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 85		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357
self.entry_name  =  None self.is_no_end_pen  =  None
self.data_class  =  None self.gap_sep_range  =  None
self.molecule_type  =  None self.is_no_pgap  =  None
self.sequence_length  =  None self.is_no_hgap  =  None


Clone # 1347
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 90		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 361
self.accessions  =  [] self.h_gap_residues  =  []
self.created  =  None self.max_div  =  None
self.sequence_update  =  None self.trans_weight  =  None
self.annotation_update  =  None self.output_file  =  None


Clone # 1348
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Ace.py"
The first line is 146		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 355
self.nbases=None self.gap_open_pen &nbsp;= &nbsp;None
self.nreads=None self.gap_ext_pen &nbsp;=  None
self.nsegments=None self.is_no_end_pen &nbsp;=  None
self.uorc=None self.gap_sep_range  =  None


Clone # 1349
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/ParseBlastTable.py"
The first line is 28		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Sequencing/Ace.py"
The first line is 146
self.program &nbsp;=  None self.nbases=None
self.version  =  None self.nreads=None
self.date &nbsp;=  None self.nsegments=None
self.iteration  =  None self.uorc=None


Clone # 1350
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/ParseBlastTable.py"
The first line is 28		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 355
self.program  =  None self.gap_open_pen  =  None
self.version  =  None self.gap_ext_pen  =  None
self.date  =  None self.is_no_end_pen  =  None
self.iteration  =  None self.gap_sep_range  =  None


Clone # 1351
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.sc_mismatch  =  None self.sc_match  =  None
self.num_hits  =  None self.sc_mismatch  =  None
self.num_sequences  =  None self.num_hits  =  None
self.num_good_extends  =  None self.num_sequences  =  None


Clone # 1352
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 291		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.num_seqs_better_e  =  None self.num_good_extends  =  None
self.hsps_no_gap  =  None self.num_seqs_better_e  =  None
self.hsps_prelim_gapped  =  None self.hsps_no_gap  =  None
self.hsps_prelim_gapped_attemped  =  None self.hsps_prelim_gapped  =  None


Clone # 1353
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.hsps_gapped  =  None self.hsps_prelim_gapped_attemped  =  None
self.query_id  =  None self.hsps_gapped  =  None
self.query_length  =  None self.query_id  =  None
self.database_length  =  None self.query_length  =  None


Clone # 1354
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 299		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 298
self.effective_hsp_length  =  None self.database_length  =  None
self.effective_query_length  =  None self.effective_hsp_length  =  None
self.effective_database_length  =  None self.effective_query_length  =  None
self.effective_search_space  =  None self.effective_database_length  =  None


Clone # 1355
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 288		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.num_hits  =  None self.sc_match  =  None
self.num_sequences  =  None self.sc_mismatch  =  None
self.num_good_extends  =  None self.num_hits  =  None
self.num_seqs_better_e  =  None self.num_sequences  =  None


Clone # 1356
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 292		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.hsps_no_gap  =  None self.num_good_extends  =  None
self.hsps_prelim_gapped  =  None self.num_seqs_better_e  =  None
self.hsps_prelim_gapped_attemped  =  None self.hsps_no_gap  =  None
self.hsps_gapped  =  None self.hsps_prelim_gapped  =  None


Clone # 1357
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.query_id  =  None self.hsps_prelim_gapped_attemped  =  None
self.query_length  =  None self.hsps_gapped  =  None
self.database_length  =  None self.query_id  =  None
self.effective_hsp_length  =  None self.query_length  =  None


Clone # 1358
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 300		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 298
self.effective_query_length  =  None self.database_length  =  None
self.effective_database_length  =  None self.effective_hsp_length  =  None
self.effective_search_space  =  None self.effective_query_length  =  None
self.effective_search_space_used  =  None self.effective_database_length  =  None


Clone # 1359
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 289		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.num_sequences  =  None self.sc_match  =  None
self.num_good_extends  =  None self.sc_mismatch  =  None
self.num_seqs_better_e  =  None self.num_hits  =  None
self.hsps_no_gap  =  None self.num_sequences  =  None


Clone # 1360
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 293		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.hsps_prelim_gapped  =  None self.num_good_extends  =  None
self.hsps_prelim_gapped_attemped  =  None self.num_seqs_better_e  =  None
self.hsps_gapped  =  None self.hsps_no_gap  =  None
self.query_id  =  None self.hsps_prelim_gapped  =  None


Clone # 1361
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 297		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.query_length  =  None self.hsps_prelim_gapped_attemped  =  None
self.database_length  =  None self.hsps_gapped  =  None
self.effective_hsp_length  =  None self.query_id  =  None
self.effective_query_length  =  None self.query_length  =  None


Clone # 1362
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.num_good_extends  =  None self.sc_match  =  None
self.num_seqs_better_e  =  None self.sc_mismatch  =  None
self.hsps_no_gap  =  None self.num_hits  =  None
self.hsps_prelim_gapped  =  None self.num_sequences  =  None


Clone # 1363
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.hsps_prelim_gapped_attemped  =  None self.num_good_extends  =  None
self.hsps_gapped  =  None self.num_seqs_better_e  =  None
self.query_id  =  None self.hsps_no_gap  =  None
self.query_length  =  None self.hsps_prelim_gapped  =  None


Clone # 1364
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 298		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.database_length  =  None self.hsps_prelim_gapped_attemped  =  None
self.effective_hsp_length  =  None self.hsps_gapped  =  None
self.effective_query_length  =  None self.query_id  =  None
self.effective_database_length  =  None self.query_length  =  None


Clone # 1365
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 291		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.num_seqs_better_e  =  None self.sc_match  =  None
self.hsps_no_gap  =  None self.sc_mismatch  =  None
self.hsps_prelim_gapped  =  None self.num_hits  =  None
self.hsps_prelim_gapped_attemped  =  None self.num_sequences  =  None


Clone # 1366
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.hsps_gapped  =  None self.num_good_extends  =  None
self.query_id  =  None self.num_seqs_better_e  =  None
self.query_length  =  None self.hsps_no_gap  =  None
self.database_length  =  None self.hsps_prelim_gapped  =  None


Clone # 1367
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 299		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.effective_hsp_length  =  None self.hsps_prelim_gapped_attemped  =  None
self.effective_query_length  =  None self.hsps_gapped  =  None
self.effective_database_length  =  None self.query_id  =  None
self.effective_search_space  =  None self.query_length  =  None


Clone # 1368
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 292		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.hsps_no_gap  =  None self.sc_match  =  None
self.hsps_prelim_gapped  =  None self.sc_mismatch  =  None
self.hsps_prelim_gapped_attemped  =  None self.num_hits  =  None
self.hsps_gapped  =  None self.num_sequences  =  None


Clone # 1369
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.query_id  =  None self.num_good_extends  =  None
self.query_length  =  None self.num_seqs_better_e  =  None
self.database_length  =  None self.hsps_no_gap  =  None
self.effective_hsp_length  =  None self.hsps_prelim_gapped  =  None


Clone # 1370
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 300		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.effective_query_length  =  None self.hsps_prelim_gapped_attemped  =  None
self.effective_database_length  =  None self.hsps_gapped  =  None
self.effective_search_space  =  None self.query_id  =  None
self.effective_search_space_used  =  None self.query_length  =  None


Clone # 1371
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 292
self.max_div  =  None self.hsps_no_gap  =  None
self.trans_weight  =  None self.hsps_prelim_gapped  =  None
self.output_file  =  None self.hsps_prelim_gapped_attemped  =  None
self.output_type  =  None self.hsps_gapped  =  None


Clone # 1372
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296
self.output_order  =  None self.query_id  =  None
self.change_case  =  None self.query_length  =  None
self.add_seqnos  =  None self.database_length  =  None
self.guide_tree  =  None self.effective_hsp_length  =  None


Clone # 1373
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 300
self.new_tree  =  None self.effective_query_length  =  None
self.protein_matrix  =  None self.effective_database_length  =  None
self.dna_matrix  =  None self.effective_search_space  =  None
self.type  =  None self.effective_search_space_used  =  None


Clone # 1374
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 291
self.max_div  =  None self.num_seqs_better_e  =  None
self.trans_weight  =  None self.hsps_no_gap  =  None
self.output_file  =  None self.hsps_prelim_gapped  =  None
self.output_type  =  None self.hsps_prelim_gapped_attemped  =  None


Clone # 1375
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295
self.output_order  =  None self.hsps_gapped  =  None
self.change_case  =  None self.query_id  =  None
self.add_seqnos  =  None self.query_length  =  None
self.guide_tree  =  None self.database_length  =  None


Clone # 1376
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 299
self.new_tree  =  None self.effective_hsp_length  =  None
self.protein_matrix  =  None self.effective_query_length  =  None
self.dna_matrix  =  None self.effective_database_length  =  None
self.type  =  None self.effective_search_space  =  None


Clone # 1377
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.max_div  =  None self.num_good_extends  =  None
self.trans_weight  =  None self.num_seqs_better_e  =  None
self.output_file  =  None self.hsps_no_gap  =  None
self.output_type  =  None self.hsps_prelim_gapped  =  None


Clone # 1378
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.output_order  =  None self.hsps_prelim_gapped_attemped  =  None
self.change_case  =  None self.hsps_gapped  =  None
self.add_seqnos  =  None self.query_id  =  None
self.guide_tree  =  None self.query_length  =  None


Clone # 1379
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 298
self.new_tree  =  None self.database_length  =  None
self.protein_matrix  =  None self.effective_hsp_length  =  None
self.dna_matrix  =  None self.effective_query_length  =  None
self.type  =  None self.effective_database_length  =  None


Clone # 1380
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 289
self.max_div  =  None self.num_sequences  =  None
self.trans_weight  =  None self.num_good_extends  =  None
self.output_file  =  None self.num_seqs_better_e  =  None
self.output_type  =  None self.hsps_no_gap  =  None


Clone # 1381
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 293
self.output_order  =  None self.hsps_prelim_gapped  =  None
self.change_case  =  None self.hsps_prelim_gapped_attemped  =  None
self.add_seqnos  =  None self.hsps_gapped  =  None
self.guide_tree  =  None self.query_id  =  None


Clone # 1382
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 297
self.new_tree  =  None self.query_length  =  None
self.protein_matrix  =  None self.database_length  =  None
self.dna_matrix  =  None self.effective_hsp_length  =  None
self.type  =  None self.effective_query_length  =  None


Clone # 1383
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 288
self.max_div  =  None self.num_hits  =  None
self.trans_weight  =  None self.num_sequences  =  None
self.output_file  =  None self.num_good_extends  =  None
self.output_type  =  None self.num_seqs_better_e  =  None


Clone # 1384
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 292
self.output_order  =  None self.hsps_no_gap  =  None
self.change_case  =  None self.hsps_prelim_gapped  =  None
self.add_seqnos  =  None self.hsps_prelim_gapped_attemped  =  None
self.guide_tree  =  None self.hsps_gapped  =  None


Clone # 1385
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296
self.new_tree  =  None self.query_id  =  None
self.protein_matrix  =  None self.query_length  =  None
self.dna_matrix  =  None self.database_length  =  None
self.type  =  None self.effective_hsp_length  =  None


Clone # 1386
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 287
self.max_div  =  None self.sc_mismatch  =  None
self.trans_weight  =  None self.num_hits  =  None
self.output_file  =  None self.num_sequences  =  None
self.output_type  =  None self.num_good_extends  =  None


Clone # 1387
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 291
self.output_order  =  None self.num_seqs_better_e  =  None
self.change_case  =  None self.hsps_no_gap  =  None
self.add_seqnos  =  None self.hsps_prelim_gapped  =  None
self.guide_tree  =  None self.hsps_prelim_gapped_attemped  =  None


Clone # 1388
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295
self.new_tree  =  None self.hsps_gapped  =  None
self.protein_matrix  =  None self.query_id  =  None
self.dna_matrix  =  None self.query_length  =  None
self.type  =  None self.database_length  =  None


Clone # 1389
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.max_div  =  None self.sc_match  =  None
self.trans_weight  =  None self.sc_mismatch  =  None
self.output_file  =  None self.num_hits  =  None
self.output_type  =  None self.num_sequences  =  None


Clone # 1390
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.output_order  =  None self.num_good_extends  =  None
self.change_case  =  None self.num_seqs_better_e  =  None
self.add_seqnos  =  None self.hsps_no_gap  =  None
self.guide_tree  =  None self.hsps_prelim_gapped  =  None


Clone # 1391
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.new_tree  =  None self.hsps_prelim_gapped_attemped  =  None
self.protein_matrix  =  None self.hsps_gapped  =  None
self.dna_matrix  =  None self.query_id  =  None
self.type  =  None self.query_length  =  None


Clone # 1392
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 293		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.hsps_prelim_gapped  =  None self.max_div  =  None
self.hsps_prelim_gapped_attemped  =  None self.trans_weight  =  None
self.hsps_gapped  =  None self.output_file  =  None
self.query_id  =  None self.output_type  =  None


Clone # 1393
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 297		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369
self.query_length  =  None self.output_order  =  None
self.database_length  =  None self.change_case  =  None
self.effective_hsp_length  =  None self.add_seqnos  =  None
self.effective_query_length  =  None self.guide_tree  =  None


Clone # 1394
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 293		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.hsps_prelim_gapped  =  None self.sc_match  =  None
self.hsps_prelim_gapped_attemped  =  None self.sc_mismatch  =  None
self.hsps_gapped  =  None self.num_hits  =  None
self.query_id  =  None self.num_sequences  =  None


Clone # 1395
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 297		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.query_length  =  None self.num_good_extends  =  None
self.database_length  =  None self.num_seqs_better_e  =  None
self.effective_hsp_length  =  None self.hsps_no_gap  =  None
self.effective_query_length  =  None self.hsps_prelim_gapped  =  None


Clone # 1396
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 363		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.trans_weight  =  None self.sc_match  =  None
self.output_file  =  None self.sc_mismatch  =  None
self.output_type  =  None self.num_hits  =  None
self.output_order  =  None self.num_sequences  =  None


Clone # 1397
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 370		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.change_case  =  None self.num_good_extends  =  None
self.add_seqnos  =  None self.num_seqs_better_e  =  None
self.guide_tree  =  None self.hsps_no_gap  =  None
self.new_tree  =  None self.hsps_prelim_gapped  =  None


Clone # 1398
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 363		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.trans_weight  =  None self.max_div  =  None
self.output_file  =  None self.trans_weight  =  None
self.output_type  =  None self.output_file  =  None
self.output_order  =  None self.output_type  =  None


Clone # 1399
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 370		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369
self.change_case  =  None self.output_order  =  None
self.add_seqnos  =  None self.change_case  =  None
self.guide_tree  =  None self.add_seqnos  =  None
self.new_tree  =  None self.guide_tree  =  None


Clone # 1400
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296
self.is_quick  =  None self.query_id  =  None
self.allow_negative  =  None self.query_length  =  None
self.gap_open_pen  =  None self.database_length  =  None
self.gap_ext_pen  =  None self.effective_hsp_length  =  None


Clone # 1401
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 300
self.is_no_end_pen  =  None self.effective_query_length  =  None
self.gap_sep_range  =  None self.effective_database_length  =  None
self.is_no_pgap  =  None self.effective_search_space  =  None
self.is_no_hgap  =  None self.effective_search_space_used  =  None


Clone # 1402
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 125
self.is_quick  =  None self.geneid  =  None
self.allow_negative  =  None self.genename  =  None
self.gap_open_pen  =  None self.gweight  =  None
self.gap_ext_pen  =  None self.gorder  =  None


Clone # 1403
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 129
self.is_no_end_pen  =  None self.expid  =  None
self.gap_sep_range  =  None self.eweight  =  None
self.is_no_pgap  =  None self.eorder  =  None
self.is_no_hgap  =  None self.uniqid  =  None


Clone # 1404
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 368
self.is_quick  =  None self.output_type  =  None
self.allow_negative  =  None self.output_order  =  None
self.gap_open_pen  =  None self.change_case  =  None
self.gap_ext_pen  =  None self.add_seqnos  =  None


Clone # 1405
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 374
self.is_no_end_pen  =  None self.guide_tree  =  None
self.gap_sep_range  =  None self.new_tree  =  None
self.is_no_pgap  =  None self.protein_matrix  =  None
self.is_no_hgap  =  None self.dna_matrix  =  None


Clone # 1406
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295
self.is_quick  =  None self.hsps_gapped  =  None
self.allow_negative  =  None self.query_id  =  None
self.gap_open_pen  =  None self.query_length  =  None
self.gap_ext_pen  =  None self.database_length  =  None


Clone # 1407
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 299
self.is_no_end_pen  =  None self.effective_hsp_length  =  None
self.gap_sep_range  =  None self.effective_query_length  =  None
self.is_no_pgap  =  None self.effective_database_length  =  None
self.is_no_hgap  =  None self.effective_search_space  =  None


Clone # 1408
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.is_quick  =  None self.hsps_prelim_gapped_attemped  =  None
self.allow_negative  =  None self.hsps_gapped  =  None
self.gap_open_pen  =  None self.query_id  =  None
self.gap_ext_pen  =  None self.query_length  =  None


Clone # 1409
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 298
self.is_no_end_pen  =  None self.database_length  =  None
self.gap_sep_range  =  None self.effective_hsp_length  =  None
self.is_no_pgap  =  None self.effective_query_length  =  None
self.is_no_hgap  =  None self.effective_database_length  =  None


Clone # 1410
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 293
self.is_quick  =  None self.hsps_prelim_gapped  =  None
self.allow_negative  =  None self.hsps_prelim_gapped_attemped  =  None
self.gap_open_pen  =  None self.hsps_gapped  =  None
self.gap_ext_pen  =  None self.query_id  =  None


Clone # 1411
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 297
self.is_no_end_pen  =  None self.query_length  =  None
self.gap_sep_range  =  None self.database_length  =  None
self.is_no_pgap  =  None self.effective_hsp_length  =  None
self.is_no_hgap  =  None self.effective_query_length  =  None


Clone # 1412
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 292
self.is_quick  =  None self.hsps_no_gap  =  None
self.allow_negative  =  None self.hsps_prelim_gapped  =  None
self.gap_open_pen  =  None self.hsps_prelim_gapped_attemped  =  None
self.gap_ext_pen  =  None self.hsps_gapped  =  None


Clone # 1413
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296
self.is_no_end_pen  =  None self.query_id  =  None
self.gap_sep_range  =  None self.query_length  =  None
self.is_no_pgap  =  None self.database_length  =  None
self.is_no_hgap  =  None self.effective_hsp_length  =  None


Clone # 1414
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 291
self.is_quick  =  None self.num_seqs_better_e  =  None
self.allow_negative  =  None self.hsps_no_gap  =  None
self.gap_open_pen  =  None self.hsps_prelim_gapped  =  None
self.gap_ext_pen  =  None self.hsps_prelim_gapped_attemped  =  None


Clone # 1415
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295
self.is_no_end_pen  =  None self.hsps_gapped  =  None
self.gap_sep_range  =  None self.query_id  =  None
self.is_no_pgap  =  None self.query_length  =  None
self.is_no_hgap  =  None self.database_length  =  None


Clone # 1416
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.is_quick  =  None self.num_good_extends  =  None
self.allow_negative  =  None self.num_seqs_better_e  =  None
self.gap_open_pen  =  None self.hsps_no_gap  =  None
self.gap_ext_pen  =  None self.hsps_prelim_gapped  =  None


Clone # 1417
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.is_no_end_pen  =  None self.hsps_prelim_gapped_attemped  =  None
self.gap_sep_range  =  None self.hsps_gapped  =  None
self.is_no_pgap  =  None self.query_id  =  None
self.is_no_hgap  =  None self.query_length  =  None


Clone # 1418
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 289
self.is_quick  =  None self.num_sequences  =  None
self.allow_negative  =  None self.num_good_extends  =  None
self.gap_open_pen  =  None self.num_seqs_better_e  =  None
self.gap_ext_pen  =  None self.hsps_no_gap  =  None


Clone # 1419
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 293
self.is_no_end_pen  =  None self.hsps_prelim_gapped  =  None
self.gap_sep_range  =  None self.hsps_prelim_gapped_attemped  =  None
self.is_no_pgap  =  None self.hsps_gapped  =  None
self.is_no_hgap  =  None self.query_id  =  None


Clone # 1420
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 288
self.is_quick  =  None self.num_hits  =  None
self.allow_negative  =  None self.num_sequences  =  None
self.gap_open_pen  =  None self.num_good_extends  =  None
self.gap_ext_pen  =  None self.num_seqs_better_e  =  None


Clone # 1421
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 292
self.is_no_end_pen  =  None self.hsps_no_gap  =  None
self.gap_sep_range  =  None self.hsps_prelim_gapped  =  None
self.is_no_pgap  =  None self.hsps_prelim_gapped_attemped  =  None
self.is_no_hgap  =  None self.hsps_gapped  =  None


Clone # 1422
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 367
self.is_quick  =  None self.output_file  =  None
self.allow_negative  =  None self.output_type  =  None
self.gap_open_pen  =  None self.output_order  =  None
self.gap_ext_pen  =  None self.change_case  =  None


Clone # 1423
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 371
self.is_no_end_pen  =  None self.add_seqnos  =  None
self.gap_sep_range  =  None self.guide_tree  =  None
self.is_no_pgap  =  None self.new_tree  =  None
self.is_no_hgap  =  None self.protein_matrix  =  None


Clone # 1424
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123
self.hsps_prelim_gapped_attemped  =  None self.data  =  None
self.hsps_gapped  =  None self.mask  =  None
self.query_id  =  None self.geneid  =  None
self.query_length  =  None self.genename  =  None


Clone # 1425
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 298		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127
self.database_length  =  None self.gweight  =  None
self.effective_hsp_length  =  None self.gorder  =  None
self.effective_query_length  =  None self.expid  =  None
self.effective_database_length  =  None self.eweight  =  None


Clone # 1426
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.hsps_prelim_gapped_attemped  =  None self.sc_match  =  None
self.hsps_gapped  =  None self.sc_mismatch  =  None
self.query_id  =  None self.num_hits  =  None
self.query_length  =  None self.num_sequences  =  None


Clone # 1427
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 298		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.database_length  =  None self.num_good_extends  =  None
self.effective_hsp_length  =  None self.num_seqs_better_e  =  None
self.effective_query_length  =  None self.hsps_no_gap  =  None
self.effective_database_length  =  None self.hsps_prelim_gapped  =  None


Clone # 1428
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.hsps_prelim_gapped_attemped  =  None self.max_div  =  None
self.hsps_gapped  =  None self.trans_weight  =  None
self.query_id  =  None self.output_file  =  None
self.query_length  =  None self.output_type  =  None


Clone # 1429
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 298		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369
self.database_length  =  None self.output_order  =  None
self.effective_hsp_length  =  None self.change_case  =  None
self.effective_query_length  =  None self.add_seqnos  =  None
self.effective_database_length  =  None self.guide_tree  =  None


Clone # 1430
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 363
self.data  =  None self.trans_weight  =  None
self.mask  =  None self.output_file  =  None
self.geneid  =  None self.output_type  =  None
self.genename  =  None self.output_order  =  None


Clone # 1431
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 370
self.gweight  =  None self.change_case  =  None
self.gorder  =  None self.add_seqnos  =  None
self.expid  =  None self.guide_tree  =  None
self.eweight  =  None self.new_tree  =  None


Clone # 1432
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 293
self.data  =  None self.hsps_prelim_gapped  =  None
self.mask  =  None self.hsps_prelim_gapped_attemped  =  None
self.geneid  =  None self.hsps_gapped  =  None
self.genename  =  None self.query_id  =  None


Clone # 1433
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 297
self.gweight  =  None self.query_length  =  None
self.gorder  =  None self.database_length  =  None
self.expid  =  None self.effective_hsp_length  =  None
self.eweight  =  None self.effective_query_length  =  None


Clone # 1434
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 292
self.data  =  None self.hsps_no_gap  =  None
self.mask  =  None self.hsps_prelim_gapped  =  None
self.geneid  =  None self.hsps_prelim_gapped_attemped  =  None
self.genename  =  None self.hsps_gapped  =  None


Clone # 1435
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296
self.gweight  =  None self.query_id  =  None
self.gorder  =  None self.query_length  =  None
self.expid  =  None self.database_length  =  None
self.eweight  =  None self.effective_hsp_length  =  None


Clone # 1436
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 291
self.data  =  None self.num_seqs_better_e  =  None
self.mask  =  None self.hsps_no_gap  =  None
self.geneid  =  None self.hsps_prelim_gapped  =  None
self.genename  =  None self.hsps_prelim_gapped_attemped  =  None


Clone # 1437
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295
self.gweight  =  None self.hsps_gapped  =  None
self.gorder  =  None self.query_id  =  None
self.expid  =  None self.query_length  =  None
self.eweight  =  None self.database_length  =  None


Clone # 1438
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.data  =  None self.num_good_extends  =  None
self.mask  =  None self.num_seqs_better_e  =  None
self.geneid  =  None self.hsps_no_gap  =  None
self.genename  =  None self.hsps_prelim_gapped  =  None


Clone # 1439
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.gweight  =  None self.hsps_prelim_gapped_attemped  =  None
self.gorder  =  None self.hsps_gapped  =  None
self.expid  =  None self.query_id  =  None
self.eweight  =  None self.query_length  =  None


Clone # 1440
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 289
self.data  =  None self.num_sequences  =  None
self.mask  =  None self.num_good_extends  =  None
self.geneid  =  None self.num_seqs_better_e  =  None
self.genename  =  None self.hsps_no_gap  =  None


Clone # 1441
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 293
self.gweight  =  None self.hsps_prelim_gapped  =  None
self.gorder  =  None self.hsps_prelim_gapped_attemped  =  None
self.expid  =  None self.hsps_gapped  =  None
self.eweight  =  None self.query_id  =  None


Clone # 1442
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 288
self.data  =  None self.num_hits  =  None
self.mask  =  None self.num_sequences  =  None
self.geneid  =  None self.num_good_extends  =  None
self.genename  =  None self.num_seqs_better_e  =  None


Clone # 1443
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 292
self.gweight  =  None self.hsps_no_gap  =  None
self.gorder  =  None self.hsps_prelim_gapped  =  None
self.expid  =  None self.hsps_prelim_gapped_attemped  =  None
self.eweight  =  None self.hsps_gapped  =  None


Clone # 1444
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 287
self.data  =  None self.sc_mismatch  =  None
self.mask  =  None self.num_hits  =  None
self.geneid  =  None self.num_sequences  =  None
self.genename  =  None self.num_good_extends  =  None


Clone # 1445
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 291
self.gweight  =  None self.num_seqs_better_e  =  None
self.gorder  =  None self.hsps_no_gap  =  None
self.expid  =  None self.hsps_prelim_gapped  =  None
self.eweight  =  None self.hsps_prelim_gapped_attemped  =  None


Clone # 1446
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.data  =  None self.sc_match  =  None
self.mask  =  None self.sc_mismatch  =  None
self.geneid  =  None self.num_hits  =  None
self.genename  =  None self.num_sequences  =  None


Clone # 1447
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.gweight  =  None self.num_good_extends  =  None
self.gorder  =  None self.num_seqs_better_e  =  None
self.expid  =  None self.hsps_no_gap  =  None
self.eweight  =  None self.hsps_prelim_gapped  =  None


Clone # 1448
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.data  =  None self.max_div  =  None
self.mask  =  None self.trans_weight  =  None
self.geneid  =  None self.output_file  =  None
self.genename  =  None self.output_type  =  None


Clone # 1449
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369
self.gweight  =  None self.output_order  =  None
self.gorder  =  None self.change_case  =  None
self.expid  =  None self.add_seqnos  =  None
self.eweight  =  None self.guide_tree  =  None


Clone # 1450
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 367		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.output_file  =  None self.sc_match  =  None
self.output_type  =  None self.sc_mismatch  =  None
self.output_order  =  None self.num_hits  =  None
self.change_case  =  None self.num_sequences  =  None


Clone # 1451
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 371		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.add_seqnos  =  None self.num_good_extends  =  None
self.guide_tree  =  None self.num_seqs_better_e  =  None
self.new_tree  =  None self.hsps_no_gap  =  None
self.protein_matrix  =  None self.hsps_prelim_gapped  =  None


Clone # 1452
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 367		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123
self.output_file  =  None self.data  =  None
self.output_type  =  None self.mask  =  None
self.output_order  =  None self.geneid  =  None
self.change_case  =  None self.genename  =  None


Clone # 1453
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 371		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127
self.add_seqnos  =  None self.gweight  =  None
self.guide_tree  =  None self.gorder  =  None
self.new_tree  =  None self.expid  =  None
self.protein_matrix  =  None self.eweight  =  None


Clone # 1454
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 367		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.output_file  =  None self.max_div  =  None
self.output_type  =  None self.trans_weight  =  None
self.output_order  =  None self.output_file  =  None
self.change_case  =  None self.output_type  =  None


Clone # 1455
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 371		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369
self.add_seqnos  =  None self.output_order  =  None
self.guide_tree  =  None self.change_case  =  None
self.new_tree  =  None self.add_seqnos  =  None
self.protein_matrix  =  None self.guide_tree  =  None


Clone # 1456
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352
self.output_order  =  None self.is_quick  =  None
self.change_case  =  None self.allow_negative  =  None
self.add_seqnos  =  None self.gap_open_pen  =  None
self.guide_tree  =  None self.gap_ext_pen  =  None


Clone # 1457
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357
self.new_tree  =  None self.is_no_end_pen  =  None
self.protein_matrix  =  None self.gap_sep_range  =  None
self.dna_matrix  =  None self.is_no_pgap  =  None
self.type  =  None self.is_no_hgap  =  None


Clone # 1458
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 124
self.symbols=None     &nbsp;                        #  set  of  symbols self.mask  =  None
self.equate=None                                #  set  of  symbol  synonyms self.geneid  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.genename  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.gweight  =  None


Clone # 1459
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 367
self.symbols=None     &nbsp;                        #  set  of  symbols self.output_file  =  None
self.equate=None                                #  set  of  symbol  synonyms self.output_type  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.output_order  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.change_case  =  None


Clone # 1460
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 294
self.symbols=None     &nbsp;                        #  set  of  symbols self.hsps_prelim_gapped_attemped  =  None
self.equate=None                                #  set  of  symbol  synonyms self.hsps_gapped  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.query_id  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.query_length  =  None


Clone # 1461
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 293
self.symbols=None     &nbsp;                        #  set  of  symbols self.hsps_prelim_gapped  =  None
self.equate=None                                #  set  of  symbol  synonyms self.hsps_prelim_gapped_attemped  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.hsps_gapped  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.query_id  =  None


Clone # 1462
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 292
self.symbols=None     &nbsp;                        #  set  of  symbols self.hsps_no_gap  =  None
self.equate=None                                #  set  of  symbol  synonyms self.hsps_prelim_gapped  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.hsps_prelim_gapped_attemped  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.hsps_gapped  =  None


Clone # 1463
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 291
self.symbols=None     &nbsp;                        #  set  of  symbols self.num_seqs_better_e  =  None
self.equate=None                                #  set  of  symbol  synonyms self.hsps_no_gap  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.hsps_prelim_gapped  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.hsps_prelim_gapped_attemped  =  None


Clone # 1464
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.symbols=None     &nbsp;                        #  set  of  symbols self.num_good_extends  =  None
self.equate=None                                #  set  of  symbol  synonyms self.num_seqs_better_e  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.hsps_no_gap  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.hsps_prelim_gapped  =  None


Clone # 1465
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 289
self.symbols=None     &nbsp;                        #  set  of  symbols self.num_sequences  =  None
self.equate=None                                #  set  of  symbol  synonyms self.num_good_extends  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.num_seqs_better_e  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.hsps_no_gap  =  None


Clone # 1466
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 288
self.symbols=None     &nbsp;                        #  set  of  symbols self.num_hits  =  None
self.equate=None                                #  set  of  symbol  synonyms self.num_sequences  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.num_good_extends  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.num_seqs_better_e  =  None


Clone # 1467
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 287
self.symbols=None     &nbsp;                        #  set  of  symbols self.sc_mismatch  =  None
self.equate=None                                #  set  of  symbol  synonyms self.num_hits  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.num_sequences  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.num_good_extends  =  None


Clone # 1468
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.symbols=None     &nbsp;                        #  set  of  symbols self.sc_match  =  None
self.equate=None                                #  set  of  symbol  synonyms self.sc_mismatch  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.num_hits  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.num_sequences  =  None


Clone # 1469
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123
self.symbols=None     &nbsp;                        #  set  of  symbols self.data  =  None
self.equate=None                                #  set  of  symbol  synonyms self.mask  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.geneid  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.genename  =  None


Clone # 1470
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 363
self.symbols=None                              #  set  of  symbols self.trans_weight  =  None
self.equate=None                                #  set  of  symbol  synonyms self.output_file  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.output_type  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.output_order  =  None


Clone # 1471
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.symbols=None     &nbsp;                        #  set  of  symbols self.max_div  =  None
self.equate=None                                #  set  of  symbol  synonyms self.trans_weight  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.output_file  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.output_type  =  None


Clone # 1472
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 287
self.is_quick  =  None self.sc_mismatch  =  None
self.allow_negative  =  None self.num_hits  =  None
self.gap_open_pen  =  None self.num_sequences  =  None
self.gap_ext_pen  =  None self.num_good_extends  =  None


Clone # 1473
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 291
self.is_no_end_pen  =  None self.num_seqs_better_e  =  None
self.gap_sep_range  =  None self.hsps_no_gap  =  None
self.is_no_pgap  =  None self.hsps_prelim_gapped  =  None
self.is_no_hgap  =  None self.hsps_prelim_gapped_attemped  =  None


Clone # 1474
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 124
self.is_quick  =  None self.mask  =  None
self.allow_negative  =  None self.geneid  =  None
self.gap_open_pen  =  None self.genename  =  None
self.gap_ext_pen  =  None self.gweight  =  None


Clone # 1475
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 128
self.is_no_end_pen  =  None self.gorder  =  None
self.gap_sep_range  =  None self.expid  =  None
self.is_no_pgap  =  None self.eweight  =  None
self.is_no_hgap  =  None self.eorder  =  None


Clone # 1476
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 363
self.is_quick  =  None self.trans_weight  =  None
self.allow_negative  =  None self.output_file  =  None
self.gap_open_pen  =  None self.output_type  =  None
self.gap_ext_pen  =  None self.output_order  =  None


Clone # 1477
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 370
self.is_no_end_pen  =  None self.change_case  =  None
self.gap_sep_range  =  None self.add_seqnos  =  None
self.is_no_pgap  =  None self.guide_tree  =  None
self.is_no_hgap  =  None self.new_tree  =  None


Clone # 1478
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 353		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352
self.allow_negative  =  None self.is_quick  =  None
self.gap_open_pen  =  None self.allow_negative  =  None
self.gap_ext_pen  =  None self.gap_open_pen  =  None
self.is_no_end_pen  =  None self.gap_ext_pen  =  None


Clone # 1479
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295
self.symbols=None     &nbsp;                        #  set  of  symbols self.hsps_gapped  =  None
self.equate=None                                #  set  of  symbol  synonyms self.query_id  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.query_length  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.database_length  =  None


Clone # 1480
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 124		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.mask  =  None self.sc_match  =  None
self.geneid  =  None self.sc_mismatch  =  None
self.genename  =  None self.num_hits  =  None
self.gweight  =  None self.num_sequences  =  None


Clone # 1481
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 128		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.gorder  =  None self.num_good_extends  =  None
self.expid  =  None self.num_seqs_better_e  =  None
self.eweight  =  None self.hsps_no_gap  =  None
self.eorder  =  None self.hsps_prelim_gapped  =  None


Clone # 1482
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 124		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123
self.mask  =  None self.data  =  None
self.geneid  =  None self.mask  =  None
self.genename  =  None self.geneid  =  None
self.gweight  =  None self.genename  =  None


Clone # 1483
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 128		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127
self.gorder  =  None self.gweight  =  None
self.expid  =  None self.gorder  =  None
self.eweight  =  None self.expid  =  None
self.eorder  =  None self.eweight  =  None


Clone # 1484
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 124		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.mask  =  None self.max_div  =  None
self.geneid  =  None self.trans_weight  =  None
self.genename  =  None self.output_file  =  None
self.gweight  =  None self.output_type  =  None


Clone # 1485
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 128		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369
self.gorder  =  None self.output_order  =  None
self.expid  =  None self.change_case  =  None
self.eweight  =  None self.add_seqnos  =  None
self.eorder  =  None self.guide_tree  =  None


Clone # 1486
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 126		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352
self.genename  =  None self.is_quick  =  None
self.gweight  =  None self.allow_negative  =  None
self.gorder  =  None self.gap_open_pen  =  None
self.expid  =  None self.gap_ext_pen  =  None


Clone # 1487
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295
self.sc_match  =  None self.hsps_gapped  =  None
self.sc_mismatch  =  None self.query_id  =  None
self.num_hits  =  None self.query_length  =  None
self.num_sequences  =  None self.database_length  =  None


Clone # 1488
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 299
self.num_good_extends  =  None self.effective_hsp_length  =  None
self.num_seqs_better_e  =  None self.effective_query_length  =  None
self.hsps_no_gap  =  None self.effective_database_length  =  None
self.hsps_prelim_gapped  =  None self.effective_search_space  =  None


Clone # 1489
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295
self.data  =  None self.hsps_gapped  =  None
self.mask  =  None self.query_id  =  None
self.geneid  =  None self.query_length  =  None
self.genename  =  None self.database_length  =  None


Clone # 1490
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 299
self.gweight  =  None self.effective_hsp_length  =  None
self.gorder  =  None self.effective_query_length  =  None
self.expid  =  None self.effective_database_length  =  None
self.eweight  =  None self.effective_search_space  =  None


Clone # 1491
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 295
self.max_div  =  None self.hsps_gapped  =  None
self.trans_weight  =  None self.query_id  =  None
self.output_file  =  None self.query_length  =  None
self.output_type  =  None self.database_length  =  None


Clone # 1492
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 299
self.output_order  =  None self.effective_hsp_length  =  None
self.change_case  =  None self.effective_query_length  =  None
self.add_seqnos  =  None self.effective_database_length  =  None
self.guide_tree  =  None self.effective_search_space  =  None


Clone # 1493
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 297
self.is_quick  =  None self.query_length  =  None
self.allow_negative  =  None self.database_length  =  None
self.gap_open_pen  =  None self.effective_hsp_length  =  None
self.gap_ext_pen  =  None self.effective_query_length  =  None


Clone # 1494
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 368		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.output_type  =  None self.sc_match  =  None
self.output_order  =  None self.sc_mismatch  =  None
self.change_case  =  None self.num_hits  =  None
self.add_seqnos  =  None self.num_sequences  =  None


Clone # 1495
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 374		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.guide_tree  =  None self.num_good_extends  =  None
self.new_tree  =  None self.num_seqs_better_e  =  None
self.protein_matrix  =  None self.hsps_no_gap  =  None
self.dna_matrix  =  None self.hsps_prelim_gapped  =  None


Clone # 1496
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 368		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504
self.output_type  =  None self.symbols=None                              #  set  of  symbols
self.output_order  =  None self.equate=None                                #  set  of  symbol  synonyms
self.change_case  =  None self.matchchar=None                          #  matching  char  for  matrix  representation
self.add_seqnos  =  None self.labels=None                                #  left,  right,  no


Clone # 1497
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 368		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123
self.output_type  =  None self.data  =  None
self.output_order  =  None self.mask  =  None
self.change_case  =  None self.geneid  =  None
self.add_seqnos  =  None self.genename  =  None


Clone # 1498
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 374		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127
self.guide_tree  =  None self.gweight  =  None
self.new_tree  =  None self.gorder  =  None
self.protein_matrix  =  None self.expid  =  None
self.dna_matrix  =  None self.eweight  =  None


Clone # 1499
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 368		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.output_type  =  None self.max_div  =  None
self.output_order  =  None self.trans_weight  =  None
self.change_case  =  None self.output_file  =  None
self.add_seqnos  =  None self.output_type  =  None


Clone # 1500
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 374		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369
self.guide_tree  =  None self.output_order  =  None
self.new_tree  =  None self.change_case  =  None
self.protein_matrix  =  None self.add_seqnos  =  None
self.dna_matrix  =  None self.guide_tree  =  None


Clone # 1501
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 370		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352
self.change_case  =  None self.is_quick  =  None
self.add_seqnos  =  None self.allow_negative  =  None
self.guide_tree  =  None self.gap_open_pen  =  None
self.new_tree  =  None self.gap_ext_pen  =  None


Clone # 1502
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.is_quick  =  None self.sc_match  =  None
self.allow_negative  =  None self.sc_mismatch  =  None
self.gap_open_pen  =  None self.num_hits  =  None
self.gap_ext_pen  =  None self.num_sequences  =  None


Clone # 1503
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.is_no_end_pen  =  None self.num_good_extends  =  None
self.gap_sep_range  =  None self.num_seqs_better_e  =  None
self.is_no_pgap  =  None self.hsps_no_gap  =  None
self.is_no_hgap  =  None self.hsps_prelim_gapped  =  None


Clone # 1504
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504
self.is_quick  =  None self.symbols=None                              #  set  of  symbols
self.allow_negative  =  None self.equate=None                                #  set  of  symbol  synonyms
self.gap_open_pen  =  None self.matchchar=None                          #  matching  char  for  matrix  representation
self.gap_ext_pen  =  None self.labels=None                                #  left,  right,  no


Clone # 1505
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123
self.is_quick  =  None self.data  =  None
self.allow_negative  =  None self.mask  =  None
self.gap_open_pen  =  None self.geneid  =  None
self.gap_ext_pen  =  None self.genename  =  None


Clone # 1506
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127
self.is_no_end_pen  =  None self.gweight  =  None
self.gap_sep_range  =  None self.gorder  =  None
self.is_no_pgap  =  None self.expid  =  None
self.is_no_hgap  =  None self.eweight  =  None


Clone # 1507
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.is_quick  =  None self.max_div  =  None
self.allow_negative  =  None self.trans_weight  =  None
self.gap_open_pen  =  None self.output_file  =  None
self.gap_ext_pen  =  None self.output_type  =  None


Clone # 1508
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 357		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369
self.is_no_end_pen  =  None self.output_order  =  None
self.gap_sep_range  =  None self.change_case  =  None
self.is_no_pgap  =  None self.add_seqnos  =  None
self.is_no_hgap  =  None self.guide_tree  =  None


Clone # 1509
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 355		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352
self.gap_open_pen  =  None self.is_quick  =  None
self.gap_ext_pen  =  None self.allow_negative  =  None
self.is_no_end_pen  =  None self.gap_open_pen  =  None
self.gap_sep_range  =  None self.gap_ext_pen  =  None


Clone # 1510
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 125		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.geneid  =  None self.sc_match  =  None
self.genename  =  None self.sc_mismatch  =  None
self.gweight  =  None self.num_hits  =  None
self.gorder  =  None self.num_sequences  =  None


Clone # 1511
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 129		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.expid  =  None self.num_good_extends  =  None
self.eweight  =  None self.num_seqs_better_e  =  None
self.eorder  =  None self.hsps_no_gap  =  None
self.uniqid  =  None self.hsps_prelim_gapped  =  None


Clone # 1512
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 125		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504
self.geneid  =  None self.symbols=None                              #  set  of  symbols
self.genename  =  None self.equate=None                                #  set  of  symbol  synonyms
self.gweight  =  None self.matchchar=None                          #  matching  char  for  matrix  representation
self.gorder  =  None self.labels=None                                #  left,  right,  no


Clone # 1513
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 125		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123
self.geneid  =  None self.data  =  None
self.genename  =  None self.mask  =  None
self.gweight  =  None self.geneid  =  None
self.gorder  =  None self.genename  =  None


Clone # 1514
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 129		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127
self.expid  =  None self.gweight  =  None
self.eweight  =  None self.gorder  =  None
self.eorder  =  None self.expid  =  None
self.uniqid  =  None self.eweight  =  None


Clone # 1515
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 125		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.geneid  =  None self.max_div  =  None
self.genename  =  None self.trans_weight  =  None
self.gweight  =  None self.output_file  =  None
self.gorder  =  None self.output_type  =  None


Clone # 1516
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 129		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369
self.expid  =  None self.output_order  =  None
self.eweight  =  None self.change_case  =  None
self.eorder  =  None self.add_seqnos  =  None
self.uniqid  =  None self.guide_tree  =  None


Clone # 1517
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352
self.gweight  =  None self.is_quick  =  None
self.gorder  =  None self.allow_negative  =  None
self.expid  =  None self.gap_open_pen  =  None
self.eweight  =  None self.gap_ext_pen  =  None


Clone # 1518
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296
self.sc_match  =  None self.query_id  =  None
self.sc_mismatch  =  None self.query_length  =  None
self.num_hits  =  None self.database_length  =  None
self.num_sequences  =  None self.effective_hsp_length  =  None


Clone # 1519
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 300
self.num_good_extends  =  None self.effective_query_length  =  None
self.num_seqs_better_e  =  None self.effective_database_length  =  None
self.hsps_no_gap  =  None self.effective_search_space  =  None
self.hsps_prelim_gapped  =  None self.effective_search_space_used  =  None


Clone # 1520
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296
self.symbols=None     &nbsp;                        #  set  of  symbols self.query_id  =  None
self.equate=None                                #  set  of  symbol  synonyms self.query_length  =  None
self.matchchar=None                          #  matching  char  for  matrix  representation self.database_length  =  None
self.labels=None     &nbsp;                          #  left,  right,  no self.effective_hsp_length  =  None


Clone # 1521
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296
self.data  =  None self.query_id  =  None
self.mask  =  None self.query_length  =  None
self.geneid  =  None self.database_length  =  None
self.genename  =  None self.effective_hsp_length  =  None


Clone # 1522
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 300
self.gweight  =  None self.effective_query_length  =  None
self.gorder  =  None self.effective_database_length  =  None
self.expid  =  None self.effective_search_space  =  None
self.eweight  =  None self.effective_search_space_used  =  None


Clone # 1523
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 296
self.max_div  =  None self.query_id  =  None
self.trans_weight  =  None self.query_length  =  None
self.output_file  =  None self.database_length  =  None
self.output_type  =  None self.effective_hsp_length  =  None


Clone # 1524
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 300
self.output_order  =  None self.effective_query_length  =  None
self.change_case  =  None self.effective_database_length  =  None
self.add_seqnos  =  None self.effective_search_space  =  None
self.guide_tree  =  None self.effective_search_space_used  =  None


Clone # 1525
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 298
self.is_quick  =  None self.database_length  =  None
self.allow_negative  =  None self.effective_hsp_length  =  None
self.gap_open_pen  =  None self.effective_query_length  =  None
self.gap_ext_pen  =  None self.effective_database_length  =  None


Clone # 1526
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 286
self.output_order  =  None self.sc_match  =  None
self.change_case  =  None self.sc_mismatch  =  None
self.add_seqnos  =  None self.num_hits  =  None
self.guide_tree  =  None self.num_sequences  =  None


Clone # 1527
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/Record.py"
The first line is 290
self.new_tree  =  None self.num_good_extends  =  None
self.protein_matrix  =  None self.num_seqs_better_e  =  None
self.dna_matrix  =  None self.hsps_no_gap  =  None
self.type  =  None self.hsps_prelim_gapped  =  None


Clone # 1528
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Nexus/Nexus.py"
The first line is 504
self.output_order  =  None self.symbols=None                              #  set  of  symbols
self.change_case  =  None self.equate=None                                #  set  of  symbol  synonyms
self.add_seqnos  =  None self.matchchar=None                          #  matching  char  for  matrix  representation
self.guide_tree  =  None self.labels=None                                #  left,  right,  no


Clone # 1529
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 123
self.output_order  =  None self.data  =  None
self.change_case  =  None self.mask  =  None
self.add_seqnos  =  None self.geneid  =  None
self.guide_tree  =  None self.genename  =  None


Clone # 1530
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Cluster/__init__.py"
The first line is 127
self.new_tree  =  None self.gweight  =  None
self.protein_matrix  =  None self.gorder  =  None
self.dna_matrix  =  None self.expid  =  None
self.type  =  None self.eweight  =  None


Clone # 1531
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 362
self.output_order  =  None self.max_div  =  None
self.change_case  =  None self.trans_weight  =  None
self.add_seqnos  =  None self.output_file  =  None
self.guide_tree  =  None self.output_type  =  None


Clone # 1532
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 375		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 369
self.new_tree  =  None self.output_order  =  None
self.protein_matrix  =  None self.change_case  =  None
self.dna_matrix  =  None self.add_seqnos  =  None
self.type  =  None self.guide_tree  =  None


Clone # 1533
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 371		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Clustalw/__init__.py"
The first line is 352
self.add_seqnos  =  None self.is_quick  =  None
self.guide_tree  =  None self.allow_negative  =  None
self.new_tree  =  None self.gap_open_pen  =  None
self.protein_matrix  =  None self.gap_ext_pen  =  None


Clone # 1534
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1613		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 871
def  is_defined(self)  :
return  False		 def  is_5overhang(self)  :
return  False
is_defined  =  classmethod(is_defined) is_5overhang  =  classmethod(is_5overhang)
def  is_ambiguous(self)  :
return  False		 def  is_3overhang(self)  :
return  False
is_ambiguous  =  classmethod(is_ambiguous) is_3overhang  =  classmethod(is_3overhang)


Clone # 1535
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1613		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 531
def  is_defined(self)  :
return  False		 def  cut_once(self)  :
return  False
is_defined  =  classmethod(is_defined) cut_once  =  classmethod(cut_once)
def  is_ambiguous(self)  :
return  False		 def  cut_twice(self)  :
return  False
is_ambiguous  =  classmethod(is_ambiguous) cut_twice  =  classmethod(cut_twice)


Clone # 1536
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 871		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 531
def  is_5overhang(self)  :
return  False		 def  cut_once(self)  :
return  False
is_5overhang  =  classmethod(is_5overhang) cut_once  =  classmethod(cut_once)
def  is_3overhang(self)  :
return  False		 def  cut_twice(self)  :
return  False
is_3overhang  =  classmethod(is_3overhang) cut_twice  =  classmethod(cut_twice)


Clone # 1537
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1613		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 859
def  is_defined(self)  :
return  False		 def  is_blunt(self)  :
return  False
is_defined  =  classmethod(is_defined) is_blunt  =  classmethod(is_blunt)
def  is_ambiguous(self)  :
return  False		 def  is_5overhang(self)  :
return  False
is_ambiguous  =  classmethod(is_ambiguous) is_5overhang  =  classmethod(is_5overhang)


Clone # 1538
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 871		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 859
def  is_5overhang(self)  :
return  False		 def  is_blunt(self)  :
return  False
is_5overhang  =  classmethod(is_5overhang) is_blunt  =  classmethod(is_blunt)
def  is_3overhang(self)  :
return  False		 def  is_5overhang(self)  :
return  False
is_3overhang  =  classmethod(is_3overhang) is_5overhang  =  classmethod(is_5overhang)


Clone # 1539
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 531		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 859
def  cut_once(self)  :
return  False		 def  is_blunt(self)  :
return  False
cut_once  =  classmethod(cut_once) is_blunt  =  classmethod(is_blunt)
def  cut_twice(self)  :
return  False		 def  is_5overhang(self)  :
return  False
cut_twice  =  classmethod(cut_twice) is_5overhang  =  classmethod(is_5overhang)


Clone # 1540
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1613		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1211
def  is_defined(self)  :
return  False		 def  is_blunt(self)  :
return  False
is_defined  =  classmethod(is_defined) is_blunt  =  classmethod(is_blunt)
def  is_ambiguous(self)  :
return  False		 def  is_5overhang(self)  :
return  False
is_ambiguous  =  classmethod(is_ambiguous) is_5overhang  =  classmethod(is_5overhang)


Clone # 1541
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 871		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1211
def  is_5overhang(self)  :
return  False		 def  is_blunt(self)  :
return  False
is_5overhang  =  classmethod(is_5overhang) is_blunt  =  classmethod(is_blunt)
def  is_3overhang(self)  :
return  False		 def  is_5overhang(self)  :
return  False
is_3overhang  =  classmethod(is_3overhang) is_5overhang  =  classmethod(is_5overhang)


Clone # 1542
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 602		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 974
def  cut_once(self)  :
return  True		 def  is_blunt(self)  :
return  True
cut_once  =  classmethod(cut_once) is_blunt  =  classmethod(is_blunt)
def  cut_twice(self)  :
return  False		 def  is_5overhang(self)  :
return  False
cut_twice  =  classmethod(cut_twice) is_5overhang  =  classmethod(is_5overhang)


Clone # 1543
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 531		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1211
def  cut_once(self)  :
return  False		 def  is_blunt(self)  :
return  False
cut_once  =  classmethod(cut_once) is_blunt  =  classmethod(is_blunt)
def  cut_twice(self)  :
return  False		 def  is_5overhang(self)  :
return  False
cut_twice  =  classmethod(cut_twice) is_5overhang  =  classmethod(is_5overhang)


Clone # 1544
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1626		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Restriction/Restriction.py"
The first line is 1092
def  is_ambiguous(self)  :
return  False		 def  is_blunt(self)  :
return  False
is_ambiguous  =  classmethod(is_ambiguous) is_blunt  =  classmethod(is_blunt)
def  is_unknown(self)  :
return  True		 def  is_5overhang(self)  :
return  True
is_unknown  =  classmethod(is_unknown) is_5overhang  =  classmethod(is_5overhang)


Clone # 1545
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 689		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 694
attempt_read_and_call(
uhandle,  consumer.effective_query_length,
has_re=re.compile(r'[Ee]ffective  length  of  query'))		 attempt_read_and_call(
uhandle,  consumer.effective_database_length,
has_re=re.compile(r'[Ee]ffective  length  of  \s*[Dd]atabase'))
attempt_read_and_call(
uhandle,  consumer.effective_database_length,
has_re=re.compile(r'[Ee]ffective  length  of &nbsp;\s*[Dd]atabase'))		 attempt_read_and_call(
uhandle,  consumer.effective_search_space,
has_re=re.compile(r'[Ee]ffective  search  space:'))


Clone # 1546
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 689		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 699
attempt_read_and_call(
uhandle,  consumer.effective_query_length,
has_re=re.compile(r'[Ee]ffective  length  of &nbsp;query'))		 attempt_read_and_call(
uhandle,  consumer.effective_search_space,
has_re=re.compile(r'[Ee]ffective  search  space:'))
attempt_read_and_call(
uhandle,  consumer.effective_database_length,
has_re=re.compile(r'[Ee]ffective  length  of  \s*[Dd]atabase'))		 attempt_read_and_call(
uhandle,  consumer.effective_search_space_used,
has_re=re.compile(r'[Ee]ffective  search  space  used'))


Clone # 1547
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 106		Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 107
self.zscore  =  string.atof(in_rec[3]) self.rmsd  =  string.atof(in_rec[4])
self.rmsd  =  string.atof(in_rec[4]) self.lali  =  string.atof(in_rec[5])


Clone # 1548
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 108		Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 109
self.lali  =  string.atof(in_rec[5]) self.lseq2  =  string.atof(in_rec[6])
self.lseq2  =  string.atof(in_rec[6]) self.pID  =  string.atof(in_rec[7])


Clone # 1549
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 111		Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 112
self.revers  =  string.atoi(in_rec[8]) self.permut  =  string.atoi(in_rec[9])
self.permut  =  string.atoi(in_rec[9]) self.nfrag  =  string.atoi(in_rec[10])


Clone # 1550
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 106		Source file "/home/peter/clone_digger/biopython-1.44/Bio/FSSP/__init__.py"
The first line is 108
self.zscore  =  string.atof(in_rec[3]) self.lali  =  string.atof(in_rec[5])
self.rmsd  =  string.atof(in_rec[4]) self.lseq2  =  string.atof(in_rec[6])


Clone # 1551
Anti-unification distance between two trees = 2
Total size of two trees = 32
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 45		Source file "/home/peter/clone_digger/biopython-1.44/Bio/EUtils/Mixins.py"
The first line is 33
def  ncheck(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "ncheck",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_ncheck(infile)		 def  lcheck(self,
db  =  "pubmed",
term  =  None,
field  =  None,
daterange  =  None):
infile  =  self.elink(db  =  db,
cmd  =  "lcheck",
term  =  term,
field  =  field,
daterange  =  daterange)
return  parse.parse_lcheck(infile)


Clone # 1552
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Enzyme/__init__.py"
The first line is 135		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 127
self.AN  =  [] self.cc_site  =  []
self.CA  =  '' self.cc_skip_flag  =  ''
self.CF  =  [] self.dr_positive  =  []
self.CC  =  []      #  one  comment  per  line self.dr_false_neg  =  []


Clone # 1553
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 166		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 107
self.references  =  [] self.journal_subsets  =  []
self.comment  =  '' self.country  =  ''
self.features  =  [] self.languages  =  []
self.base_counts  =  '' self.title  =  ''


Clone # 1554
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 166		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 97
self.references  =  [] self.publication_types  =  []
self.comment  =  '' self.number_of_references  =  ''
self.features  =  [] self.authors  =  []
self.base_counts  =  '' self.no_author  =  ''


Clone # 1555
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 100
self.record_originators  =  [] self.authors  =  []
self.entry_date  =  '' self.no_author  =  ''
self.entry_month  =  '' self.address  =  ''
self.class_update_date  =  '' self.journal_title_code  =  ''


Clone # 1556
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 155
self.record_originators  =  [] self.accession  =  []
self.entry_date  =  '' self.nid  =  ''
self.entry_month  =  '' self.pid  =  ''
self.class_update_date  =  '' self.version  =  ''


Clone # 1557
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqFeature.py"
The first line is 131		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 109
self.location  =  [] self.languages  =  []
self.authors  =  '' self.title  =  ''
self.consrtm  =  '' self.transliterated_title  =  ''
self.title  =  '' self.call_number  =  ''


Clone # 1558
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SeqFeature.py"
The first line is 135		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 114
self.journal  =  '' self.issue_part_supplement  =  ''
self.medline_id  =  '' self.volume_issue  =  ''
self.pubmed_id  =  '' self.publication_date  =  ''
self.comment  =  '' self.year  =  ''


Clone # 1559
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60
self.classname    =  [] self.name              =  []
self.sysname        =  [] self.classname    =  []
self.reaction      =  [] self.sysname &nbsp;      =  []
self.substrate    =  [] self.reaction &nbsp;    =  []


Clone # 1560
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 65		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64
self.product &nbsp;      =  [] self.substrate    =  []
self.inhibitor    =  [] self.product &nbsp;      =  []
self.cofactor      =  [] self.inhibitor    =  []
self.effector      =  [] self.cofactor      =  []


Clone # 1561
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 69		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 68
self.comment        =  [] self.effector      =  []
self.pathway        =  [] self.comment        =  []
self.genes &nbsp;          =  [] self.pathway        =  []
self.disease        =  [] self.genes &nbsp;          =  []


Clone # 1562
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 62		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60
self.sysname        =  [] self.name              =  []
self.reaction      =  [] self.classname    =  []
self.substrate    =  [] self.sysname &nbsp;      =  []
self.product &nbsp;      =  [] self.reaction      =  []


Clone # 1563
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64
self.inhibitor    =  [] self.substrate    =  []
self.cofactor      =  [] self.product        =  []
self.effector      =  [] self.inhibitor    =  []
self.comment        =  [] self.cofactor      =  []


Clone # 1564
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 70		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 68
self.pathway        =  [] self.effector      =  []
self.genes            =  [] self.comment        =  []
self.disease        =  [] self.pathway        =  []
self.structures  =  [] self.genes            =  []


Clone # 1565
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 63		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60
self.reaction      =  [] self.name &nbsp;            =  []
self.substrate    =  [] self.classname    =  []
self.product        =  [] self.sysname        =  []
self.inhibitor    =  [] self.reaction &nbsp;    =  []


Clone # 1566
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 67		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64
self.cofactor &nbsp;    =  [] self.substrate    =  []
self.effector      =  [] self.product        =  []
self.comment        =  [] self.inhibitor    =  []
self.pathway        =  [] self.cofactor      =  []


Clone # 1567
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 68
self.genes            =  [] self.effector      =  []
self.disease        =  [] self.comment        =  []
self.structures  =  [] self.pathway &nbsp; &nbsp;    =  []
self.dblinks        =  [] self.genes &nbsp; &nbsp;        =  []


Clone # 1568
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60
self.substrate    =  [] self.name &nbsp;            =  []
self.product &nbsp;      =  [] self.classname    =  []
self.inhibitor    =  [] self.sysname &nbsp;      =  []
self.cofactor      =  [] self.reaction      =  []


Clone # 1569
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 68		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64
self.effector &nbsp;    =  [] self.substrate    =  []
self.comment        =  [] self.product        =  []
self.pathway        =  [] self.inhibitor    =  []
self.genes            =  [] self.cofactor      =  []


Clone # 1570
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 65		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60
self.product        =  [] self.name &nbsp;            =  []
self.inhibitor    =  [] self.classname    =  []
self.cofactor      =  [] self.sysname        =  []
self.effector      =  [] self.reaction      =  []


Clone # 1571
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 69		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64
self.comment &nbsp;      =  [] self.substrate    =  []
self.pathway        =  [] self.product        =  []
self.genes &nbsp;          =  [] self.inhibitor    =  []
self.disease        =  [] self.cofactor      =  []


Clone # 1572
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60
self.inhibitor    =  [] self.name &nbsp;            =  []
self.cofactor &nbsp;    =  [] self.classname    =  []
self.effector      =  [] self.sysname        =  []
self.comment        =  [] self.reaction      =  []


Clone # 1573
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 70		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64
self.pathway        =  [] self.substrate    =  []
self.genes &nbsp;          =  [] self.product        =  []
self.disease &nbsp;      =  [] self.inhibitor    =  []
self.structures  =  [] self.cofactor &nbsp;    =  []


Clone # 1574
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99
self.inhibitor &nbsp;  =  [] self.organism_classification  =  []
self.cofactor      =  [] self.taxonomy_id  =  []
self.effector &nbsp;    =  [] self.host_organism  =  []
self.comment &nbsp;      =  [] self.references  =  []


Clone # 1575
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 70		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 103
self.pathway &nbsp;      =  [] self.comments  =  []
self.genes            =  [] self.cross_references  =  []
self.disease        =  [] self.keywords  =  []
self.structures  =  [] self.features  =  []


Clone # 1576
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 65		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99
self.product &nbsp;      =  [] self.organism_classification  =  []
self.inhibitor    =  [] self.taxonomy_id  =  []
self.cofactor &nbsp;    =  [] self.host_organism  =  []
self.effector &nbsp;    =  [] self.references  =  []


Clone # 1577
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 69		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 103
self.comment &nbsp;      =  [] self.comments  =  []
self.pathway &nbsp;      =  [] self.cross_references  =  []
self.genes            =  [] self.keywords  =  []
self.disease        =  [] self.features  =  []


Clone # 1578
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99
self.substrate &nbsp;  =  [] self.organism_classification  =  []
self.product        =  [] self.taxonomy_id  =  []
self.inhibitor &nbsp;  =  [] self.host_organism  =  []
self.cofactor &nbsp;    =  [] self.references  =  []


Clone # 1579
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 68		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 103
self.effector &nbsp;    =  [] self.comments  =  []
self.comment &nbsp;      =  [] self.cross_references  =  []
self.pathway &nbsp;      =  [] self.keywords  =  []
self.genes            =  [] self.features  =  []


Clone # 1580
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 63		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99
self.reaction      =  [] self.organism_classification  =  []
self.substrate &nbsp;  =  [] self.taxonomy_id  =  []
self.product &nbsp;      =  [] self.host_organism  =  []
self.inhibitor &nbsp;  =  [] self.references  =  []


Clone # 1581
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 67		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 103
self.cofactor &nbsp;    =  [] self.comments  =  []
self.effector &nbsp;    =  [] self.cross_references  =  []
self.comment &nbsp;      =  [] self.keywords  =  []
self.pathway &nbsp;      =  [] self.features  =  []


Clone # 1582
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 62		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99
self.sysname        =  [] self.organism_classification  =  []
self.reaction      =  [] self.taxonomy_id  =  []
self.substrate &nbsp;  =  [] self.host_organism  =  []
self.product &nbsp;      =  [] self.references  =  []


Clone # 1583
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 103
self.inhibitor &nbsp;  =  [] self.comments  =  []
self.cofactor &nbsp;    =  [] self.cross_references  =  []
self.effector &nbsp;    =  [] self.keywords  =  []
self.comment &nbsp;      =  [] self.features  =  []


Clone # 1584
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99
self.classname    =  [] self.organism_classification  =  []
self.sysname        =  [] self.taxonomy_id  =  []
self.reaction &nbsp;    =  [] self.host_organism  =  []
self.substrate    =  [] self.references  =  []


Clone # 1585
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 65		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 103
self.product &nbsp;      =  [] self.comments  =  []
self.inhibitor &nbsp;  =  [] self.cross_references  =  []
self.cofactor &nbsp;    =  [] self.keywords  =  []
self.effector &nbsp;    =  [] self.features  =  []


Clone # 1586
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 67		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99
self.cofactor &nbsp; &nbsp;  =  [] self.organism_classification  =  []
self.effector &nbsp;    =  [] self.taxonomy_id  =  []
self.comment        =  [] self.host_organism  =  []
self.pathway &nbsp;      =  [] self.references  =  []


Clone # 1587
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 103
self.genes            =  [] self.comments  =  []
self.disease        =  [] self.cross_references  =  []
self.structures  =  [] self.keywords  =  []
self.dblinks        =  [] self.features  =  []


Clone # 1588
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 67		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60
self.cofactor      =  [] self.name              =  []
self.effector      =  [] self.classname    =  []
self.comment        =  [] self.sysname        =  []
self.pathway &nbsp;      =  [] self.reaction      =  []


Clone # 1589
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 71		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64
self.genes &nbsp;          =  [] self.substrate    =  []
self.disease        =  [] self.product        =  []
self.structures  =  [] self.inhibitor &nbsp;  =  []
self.dblinks        =  [] self.cofactor      =  []


Clone # 1590
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 100
self.organism_classification  =  [] self.taxonomy_id  =  []
self.taxonomy_id  =  [] self.host_organism  =  []
self.host_organism  =  [] self.references  =  []
self.references  =  [] self.comments  =  []


Clone # 1591
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 100
self.name              =  [] self.taxonomy_id  =  []
self.classname    =  [] self.host_organism  =  []
self.sysname        =  [] self.references  =  []
self.reaction &nbsp;    =  [] self.comments  =  []


Clone # 1592
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 68		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99
self.effector &nbsp; &nbsp;  =  [] self.organism_classification  =  []
self.comment        =  [] self.taxonomy_id  =  []
self.pathway &nbsp;      =  [] self.host_organism  =  []
self.genes            =  [] self.references  =  []


Clone # 1593
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 68		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60
self.effector      =  [] self.name              =  []
self.comment        =  [] self.classname    =  []
self.pathway        =  [] self.sysname        =  []
self.genes            =  [] self.reaction      =  []


Clone # 1594
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 68		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.effector &nbsp;    =  [] self.gene_symbols  =  []
self.comment &nbsp;      =  [] self.secondary_source_ids  =  []
self.pathway &nbsp;      =  [] self.identifications  =  []
self.genes            =  [] self.registry_numbers  =  []


Clone # 1595
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 100		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.taxonomy_id  =  [] self.gene_symbols  =  []
self.host_organism  =  [] self.secondary_source_ids  =  []
self.references  =  [] self.identifications  =  []
self.comments  =  [] self.registry_numbers  =  []


Clone # 1596
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 67		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.cofactor &nbsp;    =  [] self.gene_symbols  =  []
self.effector &nbsp; &nbsp;  =  [] self.secondary_source_ids  =  []
self.comment &nbsp;      =  [] self.identifications  =  []
self.pathway &nbsp;      =  [] self.registry_numbers  =  []


Clone # 1597
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.inhibitor &nbsp;  =  [] self.gene_symbols  =  []
self.cofactor &nbsp;    =  [] self.secondary_source_ids  =  []
self.effector &nbsp;    =  [] self.identifications  =  []
self.comment &nbsp;      =  [] self.registry_numbers  =  []


Clone # 1598
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 65		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.product &nbsp;      =  [] self.gene_symbols  =  []
self.inhibitor &nbsp;  =  [] self.secondary_source_ids  =  []
self.cofactor &nbsp;    =  [] self.identifications  =  []
self.effector &nbsp;    =  [] self.registry_numbers  =  []


Clone # 1599
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.substrate    =  [] self.gene_symbols  =  []
self.product &nbsp;      =  [] self.secondary_source_ids  =  []
self.inhibitor &nbsp;  =  [] self.identifications  =  []
self.cofactor &nbsp;    =  [] self.registry_numbers  =  []


Clone # 1600
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 63		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.reaction &nbsp;    =  [] self.gene_symbols  =  []
self.substrate    =  [] self.secondary_source_ids  =  []
self.product &nbsp;      =  [] self.identifications  =  []
self.inhibitor &nbsp;  =  [] self.registry_numbers  =  []


Clone # 1601
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 62		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.sysname        =  [] self.gene_symbols  =  []
self.reaction &nbsp; &nbsp;  =  [] self.secondary_source_ids  =  []
self.substrate &nbsp;  =  [] self.identifications  =  []
self.product &nbsp;      =  [] self.registry_numbers  =  []


Clone # 1602
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.classname    =  [] self.gene_symbols  =  []
self.sysname &nbsp;      =  [] self.secondary_source_ids  =  []
self.reaction &nbsp;    =  [] self.identifications  =  []
self.substrate &nbsp;  =  [] self.registry_numbers  =  []


Clone # 1603
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 68		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.effector &nbsp;    =  [] self.external_metabolites  =  []
self.comment &nbsp;      =  [] self.internal_metabolites  =  []
self.pathway &nbsp;      =  [] self.unbalanced_metabolites  =  []
self.genes            =  [] self.branch_metabolites  =  []


Clone # 1604
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 100		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.taxonomy_id  =  [] self.external_metabolites  =  []
self.host_organism  =  [] self.internal_metabolites  =  []
self.references  =  [] self.unbalanced_metabolites  =  []
self.comments  =  [] self.branch_metabolites  =  []


Clone # 1605
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.organism_classification  =  [] self.external_metabolites  =  []
self.taxonomy_id  =  [] self.internal_metabolites  =  []
self.host_organism  =  [] self.unbalanced_metabolites  =  []
self.references  =  [] self.branch_metabolites  =  []


Clone # 1606
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 67		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.cofactor &nbsp;    =  [] self.external_metabolites  =  []
self.effector &nbsp;    =  [] self.internal_metabolites  =  []
self.comment &nbsp;      =  [] self.unbalanced_metabolites  =  []
self.pathway &nbsp;      =  [] self.branch_metabolites  =  []


Clone # 1607
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 66		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.inhibitor &nbsp;  =  [] self.external_metabolites  =  []
self.cofactor &nbsp;    =  [] self.internal_metabolites  =  []
self.effector &nbsp;    =  [] self.unbalanced_metabolites  =  []
self.comment &nbsp;      =  [] self.branch_metabolites  =  []


Clone # 1608
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 65		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.product &nbsp;      =  [] self.external_metabolites  =  []
self.inhibitor &nbsp;  =  [] self.internal_metabolites  =  []
self.cofactor &nbsp;    =  [] self.unbalanced_metabolites  =  []
self.effector &nbsp;    =  [] self.branch_metabolites  =  []


Clone # 1609
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.substrate &nbsp;  =  [] self.external_metabolites  =  []
self.product &nbsp;      =  [] self.internal_metabolites  =  []
self.inhibitor &nbsp;  =  [] self.unbalanced_metabolites  =  []
self.cofactor &nbsp;    =  [] self.branch_metabolites  =  []


Clone # 1610
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 63		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.reaction &nbsp;    =  [] self.external_metabolites  =  []
self.substrate &nbsp;  =  [] self.internal_metabolites  =  []
self.product &nbsp;      =  [] self.unbalanced_metabolites  =  []
self.inhibitor &nbsp;  =  [] self.branch_metabolites  =  []


Clone # 1611
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 62		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.sysname &nbsp;      =  [] self.external_metabolites  =  []
self.reaction &nbsp;    =  [] self.internal_metabolites  =  []
self.substrate &nbsp;  =  [] self.unbalanced_metabolites  =  []
self.product &nbsp;      =  [] self.branch_metabolites  =  []


Clone # 1612
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 61		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.classname &nbsp;  =  [] self.external_metabolites  =  []
self.sysname &nbsp;      =  [] self.internal_metabolites  =  []
self.reaction &nbsp;    =  [] self.unbalanced_metabolites  =  []
self.substrate &nbsp;  =  [] self.branch_metabolites  =  []


Clone # 1613
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.name &nbsp;            =  [] self.external_metabolites  =  []
self.classname &nbsp;  =  [] self.internal_metabolites  =  []
self.sysname &nbsp;      =  [] self.unbalanced_metabolites  =  []
self.reaction &nbsp;    =  [] self.branch_metabolites  =  []


Clone # 1614
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 101
self.organism_classification  =  [] self.host_organism  =  []
self.taxonomy_id  =  [] self.references  =  []
self.host_organism  =  [] self.comments  =  []
self.references  =  [] self.cross_references  =  []


Clone # 1615
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 101
self.name              =  [] self.host_organism  =  []
self.classname    =  [] self.references  =  []
self.sysname &nbsp;      =  [] self.comments  =  []
self.reaction &nbsp;    =  [] self.cross_references  =  []


Clone # 1616
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.gene_symbols  =  [] self.external_metabolites  =  []
self.secondary_source_ids  =  [] self.internal_metabolites  =  []
self.identifications  =  [] self.unbalanced_metabolites  =  []
self.registry_numbers  =  [] self.branch_metabolites  =  []


Clone # 1617
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 101
self.gene_symbols  =  [] self.host_organism  =  []
self.secondary_source_ids  =  [] self.references  =  []
self.identifications  =  [] self.comments  =  []
self.registry_numbers  =  [] self.cross_references  =  []


Clone # 1618
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 101
self.external_metabolites  =  [] self.host_organism  =  []
self.internal_metabolites  =  [] self.references  =  []
self.unbalanced_metabolites  =  [] self.comments  =  []
self.branch_metabolites  =  [] self.cross_references  =  []


Clone # 1619
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 69		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130
self.comment        =  [] self.dr_positive  =  []
self.pathway &nbsp;      =  [] self.dr_false_neg  =  []
self.genes            =  [] self.dr_false_pos  =  []
self.disease        =  [] self.dr_potential  =  []


Clone # 1620
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 69		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 123
self.comment &nbsp;      =  [] self.gene_symbols  =  []
self.pathway &nbsp; &nbsp;    =  [] self.secondary_source_ids  =  []
self.genes            =  [] self.identifications  =  []
self.disease        =  [] self.registry_numbers  =  []


Clone # 1621
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 69		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.comment &nbsp;      =  [] self.external_metabolites  =  []
self.pathway &nbsp;      =  [] self.internal_metabolites  =  []
self.genes            =  [] self.unbalanced_metabolites  =  []
self.disease        =  [] self.branch_metabolites  =  []


Clone # 1622
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 69		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 99
self.comment        =  [] self.organism_classification  =  []
self.pathway        =  [] self.taxonomy_id  =  []
self.genes            =  [] self.host_organism  =  []
self.disease        =  [] self.references  =  []


Clone # 1623
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 69		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 60
self.comment        =  [] self.name &nbsp;            =  []
self.pathway        =  [] self.classname    =  []
self.genes            =  [] self.sysname        =  []
self.disease &nbsp;      =  [] self.reaction      =  []


Clone # 1624
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/MetaTool/Record.py"
The first line is 75
self.dr_positive  =  [] self.external_metabolites  =  []
self.dr_false_neg  =  [] self.internal_metabolites  =  []
self.dr_false_pos  =  [] self.unbalanced_metabolites  =  []
self.dr_potential  =  [] self.branch_metabolites  =  []


Clone # 1625
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 101
self.dr_positive  =  [] self.host_organism  =  []
self.dr_false_neg  =  [] self.references  =  []
self.dr_false_pos  =  [] self.comments  =  []
self.dr_potential  =  [] self.cross_references  =  []


Clone # 1626
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/SwissProt/SProt.py"
The first line is 100
self.dr_positive  =  [] self.taxonomy_id  =  []
self.dr_false_neg  =  [] self.host_organism  =  []
self.dr_false_pos  =  [] self.references  =  []
self.dr_potential  =  [] self.comments  =  []


Clone # 1627
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 68
self.dr_positive  =  [] self.effector &nbsp; &nbsp;  =  []
self.dr_false_neg  =  [] self.comment &nbsp; &nbsp;    =  []
self.dr_false_pos  =  [] self.pathway &nbsp; &nbsp;    =  []
self.dr_potential  =  [] self.genes            =  []


Clone # 1628
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 67
self.dr_positive  =  [] self.cofactor &nbsp; &nbsp;  =  []
self.dr_false_neg  =  [] self.effector &nbsp; &nbsp;  =  []
self.dr_false_pos  =  [] self.comment &nbsp; &nbsp;    =  []
self.dr_potential  =  [] self.pathway &nbsp;      =  []


Clone # 1629
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 66
self.dr_positive  =  [] self.inhibitor    =  []
self.dr_false_neg  =  [] self.cofactor &nbsp; &nbsp;  =  []
self.dr_false_pos  =  [] self.effector &nbsp; &nbsp;  =  []
self.dr_potential  =  [] self.comment        =  []


Clone # 1630
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 65
self.dr_positive  =  [] self.product &nbsp; &nbsp;    =  []
self.dr_false_neg  =  [] self.inhibitor &nbsp;  =  []
self.dr_false_pos  =  [] self.cofactor &nbsp; &nbsp;  =  []
self.dr_potential  =  [] self.effector &nbsp; &nbsp;  =  []


Clone # 1631
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 64
self.dr_positive  =  [] self.substrate &nbsp;  =  []
self.dr_false_neg  =  [] self.product &nbsp; &nbsp;    =  []
self.dr_false_pos  =  [] self.inhibitor &nbsp;  =  []
self.dr_potential  =  [] self.cofactor &nbsp; &nbsp;  =  []


Clone # 1632
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 63
self.dr_positive  =  [] self.reaction      =  []
self.dr_false_neg  =  [] self.substrate &nbsp;  =  []
self.dr_false_pos  =  [] self.product &nbsp; &nbsp;    =  []
self.dr_potential  =  [] self.inhibitor &nbsp;  =  []


Clone # 1633
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 62
self.dr_positive  =  [] self.sysname &nbsp; &nbsp;    =  []
self.dr_false_neg  =  [] self.reaction &nbsp; &nbsp;  =  []
self.dr_false_pos  =  [] self.substrate &nbsp;  =  []
self.dr_potential  =  [] self.product &nbsp; &nbsp;    =  []


Clone # 1634
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Prosite/__init__.py"
The first line is 130		Source file "/home/peter/clone_digger/biopython-1.44/Bio/KEGG/Enzyme/__init__.py"
The first line is 61
self.dr_positive  =  [] self.classname &nbsp;  =  []
self.dr_false_neg  =  [] self.sysname &nbsp; &nbsp;    =  []
self.dr_false_pos  =  [] self.reaction &nbsp; &nbsp;  =  []
self.dr_potential  =  [] self.substrate &nbsp;  =  []


Clone # 1635
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 8
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Medline/__init__.py"
The first line is 88		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 165
self.mesh_tree_numbers  =  [] self.taxonomy  =  []
self.mesh_subheadings  =  [] self.references  =  []
self.abstract  =  '' self.comment  =  ''
self.comments  =  [] self.features  =  []


Clone # 1636
Anti-unification distance between two trees = 2
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Data/CodonTable.py"
The first line is 690		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Data/CodonTable.py"
The first line is 697
ambiguous_rna_by_name  =  {} ambiguous_rna_by_id  =  {}
for  key,  val  in  unambiguous_rna_by_name.items():
ambiguous_rna_by_name[key]  =  AmbiguousCodonTable(val,
IUPAC.ambiguous_rna,
IUPACData.ambiguous_rna_values,
IUPAC.extended_protein,
IUPACData.extended_protein_values)		 for  key,  val  in  unambiguous_rna_by_id.items():
ambiguous_rna_by_id[key]  =  AmbiguousCodonTable(val,
IUPAC.ambiguous_rna,
IUPACData.ambiguous_rna_values,
IUPAC.extended_protein,
IUPACData.extended_protein_values)


Clone # 1637
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Data/CodonTable.py"
The first line is 675		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Data/CodonTable.py"
The first line is 690
ambiguous_dna_by_name  =  {} ambiguous_rna_by_name  =  {}
for  key,  val  in  unambiguous_dna_by_name.items():
ambiguous_dna_by_name[key]  =  AmbiguousCodonTable(val,
IUPAC.ambiguous_dna,
IUPACData.ambiguous_dna_values,
IUPAC.extended_protein,
IUPACData.extended_protein_values)		 for  key,  val  in  unambiguous_rna_by_name.items():
ambiguous_rna_by_name[key]  =  AmbiguousCodonTable(val,
IUPAC.ambiguous_rna,
IUPACData.ambiguous_rna_values,
IUPAC.extended_protein,
IUPACData.extended_protein_values)


Clone # 1638
Anti-unification distance between two trees = 4
Total size of two trees = 32
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Data/CodonTable.py"
The first line is 682		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Data/CodonTable.py"
The first line is 697
ambiguous_dna_by_id  =  {} ambiguous_rna_by_id  =  {}
for  key,  val  in  unambiguous_dna_by_id.items():
ambiguous_dna_by_id[key]  =  AmbiguousCodonTable(val,
IUPAC.ambiguous_dna,
IUPACData.ambiguous_dna_values,
IUPAC.extended_protein,
IUPACData.extended_protein_values)		 for  key,  val  in  unambiguous_rna_by_id.items():
ambiguous_rna_by_id[key]  =  AmbiguousCodonTable(val,
IUPAC.ambiguous_rna,
IUPACData.ambiguous_rna_values,
IUPAC.extended_protein,
IUPACData.extended_protein_values)


Clone # 1639
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1261		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Blast/NCBIStandalone.py"
The first line is 1284
def  num_seqs_better_e(self,  line):
self._params.num_seqs_better_e,  =  _get_cols(
line,  (-1,),  ncols=7,  expected={2:"sequences"})
self._params.num_seqs_better_e  =  _safe_int(
self._params.num_seqs_better_e)		 def  hsps_gapped(self,  line):
self._params.hsps_gapped,  =  _get_cols(
line,  (-1,),  ncols=6,  expected={3:"gapped"})
self._params.hsps_gapped  =  _safe_int(self._params.hsps_gapped)


Clone # 1640
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 293
def  _scan_Adeno2(  self,  text,  consumer  ):
start  =  string.find(  text,  'Adeno2:'  )
end  =  string.find(  text,  'Lambda:'  )
next_item  =  text[  start:end  ]
consumer.num_Adeno2(  next_item  )		 def  _scan_Lambda(  self,  text,  consumer  ):
start  =  string.find(  text,  'Lambda:'  )
end  =  string.find(  text,  'pBR322:'  )
next_item  =  text[  start:end  ]
consumer.num_Lambda(  next_item  )


Clone # 1641
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 293		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 299
def  _scan_Lambda(  self,  text,  consumer  ):
start  =  string.find(  text,  'Lambda:'  )
end  =  string.find(  text,  'pBR322:'  )
next_item  =  text[  start:end  ]
consumer.num_Lambda(  next_item  )		 def  _scan_pBR322(self,  text,  consumer  ):
start  =  string.find(  text,  'pBR322:'  )
end  =  string.find(  text,  'PhiX174:'  )
next_item  =  text[  start:end  ]
consumer.num_pBR322(  next_item  )


Clone # 1642
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 299		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 305
def  _scan_pBR322(self,  text,  consumer  ):
start  =  string.find(  text,  'pBR322:'  )
end  =  string.find(  text,  'PhiX174:'  )
next_item  =  text[  start:end  ]
consumer.num_pBR322(  next_item  )		 def  _scan_PhiX174(self,  text,  consumer  ):
start  =  string.find(  text,  'PhiX174:'  )
end  =  string.find(  text,  'SV40:'  )<BR> next_item  =  text[  start:end  ]
consumer.num_PhiX174(  next_item  )


Clone # 1643
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 248
def  _scan_Adeno2(  self,  text,  consumer  ):
start  =  string.find(  text,  'Adeno2:'  )
end  =  string.find(  text,  'Lambda:'  )
next_item  =  text[  start:end  ]
consumer.num_Adeno2(  next_item  )		 def  _scan_prototype(self,    text,  consumer  ):
start  =  string.find(  text,  'Prototype:'  )
end  =  string.find(  text,  'Source:'  )
next_item  =  text[  start:end  ]
consumer.prototype(  next_item  )


Clone # 1644
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 293		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 254
def  _scan_Lambda(  self,  text,  consumer  ):
start  =  string.find(  text,  'Lambda:'  )
end  =  string.find(  text,  'pBR322:'  )
next_item  =  text[  start:end  ]
consumer.num_Lambda(  next_item  )		 def  _scan_source(self,  text,  consumer  ):
start  =  string.find(  text,  'Source:'  )
end  =  string.find(  text,  'Microorganism:'  )<BR> next_item  =  text[  start:end  ]
consumer.source(  next_item  )


Clone # 1645
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 299		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 261
def  _scan_pBR322(self,  text,  consumer  ):
start  =  string.find(  text,  'pBR322:'  )
end  =  string.find(  text,  'PhiX174:'  )<BR> next_item  =  text[  start:end  ]
consumer.num_pBR322(  next_item  )</span>		 def  _scan_microorganism(self,  text,  consumer  ):<BR> start  =  string.find(  text,  'Microorganism:'  )
end  =  string.find(  text,  'Growth  Temperature:'  )<BR> next_item  =  text[  start:end  ]
consumer.microorganism(  next_item  )</span>


Clone # 1646
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 242		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 293
def  _scan_enzyme_num(self,  text,  consumer  ):
start  =  string.find(  text,  'REBASE  enzyme  #:'  )
end  =  string.find(  text,  'Prototype:'  )
next_item  =  text[  start:end  ]
consumer.enzyme_num(  next_item  )		 def  _scan_Lambda(  self,  text,  consumer  ):
start  =  string.find(  text,  'Lambda:'  )
end  =  string.find(  text,  'pBR322:'  )
next_item  =  text[  start:end  ]
consumer.num_Lambda(  next_item  )


Clone # 1647
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 248		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 299
def  _scan_prototype(self,    text,  consumer  ):
start  =  string.find(  text,  'Prototype:'  )
end  =  string.find(  text,  'Source:'  )
next_item  =  text[  start:end  ]
consumer.prototype(  next_item  )		 def  _scan_pBR322(self,  text,  consumer  ):
start  =  string.find(  text,  'pBR322:'  )
end  =  string.find(  text,  'PhiX174:'  )
next_item  =  text[  start:end  ]
consumer.num_pBR322(  next_item  )


Clone # 1648
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 254		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 305
def  _scan_source(self,  text,  consumer  ):
start  =  string.find(  text,  'Source:'  )
end  =  string.find(  text,  'Microorganism:'  )
next_item  =  text[  start:end  ]
consumer.source(  next_item  )		 def  _scan_PhiX174(self,  text,  consumer  ):
start  =  string.find(  text,  'PhiX174:'  )
end  =  string.find(  text,  'SV40:'  )
next_item  =  text[  start:end  ]
consumer.num_PhiX174(  next_item  )


Clone # 1649
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 242		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 248
def  _scan_enzyme_num(self,  text,  consumer  ):
start  =  string.find(  text,  'REBASE  enzyme  #:'  )
end  =  string.find(  text,  'Prototype:'  )
next_item  =  text[  start:end  ]
consumer.enzyme_num(  next_item  )		 def  _scan_prototype(self,    text,  consumer  ):
start  =  string.find(  text,  'Prototype:'  )
end  =  string.find(  text,  'Source:'  )
next_item  =  text[  start:end  ]
consumer.prototype(  next_item  )


Clone # 1650
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 248		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 254
def  _scan_prototype(self,    text,  consumer  ):
start  =  string.find(  text,  'Prototype:'  )
end  =  string.find(  text,  'Source:'  )
next_item  =  text[  start:end  ]
consumer.prototype(  next_item  )		 def  _scan_source(self,  text,  consumer  ):
start  =  string.find(  text,  'Source:'  )
end  =  string.find(  text,  'Microorganism:'  )
next_item  =  text[  start:end  ]
consumer.source(  next_item  )


Clone # 1651
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 254		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 261
def  _scan_source(self,  text,  consumer  ):
start  =  string.find(  text,  'Source:'  )
end  =  string.find(  text,  'Microorganism:'  )
next_item  =  text[  start:end  ]
consumer.source(  next_item  )		 def  _scan_microorganism(self,  text,  consumer  ):
start  =  string.find(  text,  'Microorganism:'  )
end  =  string.find(  text,  'Growth  Temperature:'  )
next_item  =  text[  start:end  ]
consumer.microorganism(  next_item  )


Clone # 1652
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 299
def  _scan_Adeno2(  self,  text,  consumer  ):
start  =  string.find(  text,  'Adeno2:'  )
end  =  string.find(  text,  'Lambda:'  )
next_item  =  text[  start:end  ]
consumer.num_Adeno2(  next_item  )		 def  _scan_pBR322(self,  text,  consumer  ):
start  =  string.find(  text,  'pBR322:'  )
end  =  string.find(  text,  'PhiX174:'  )
next_item  =  text[  start:end  ]
consumer.num_pBR322(  next_item  )


Clone # 1653
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 293		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 305
def  _scan_Lambda(  self,  text,  consumer  ):
start  =  string.find(  text,  'Lambda:'  )
end  =  string.find(  text,  'pBR322:'  )
next_item  =  text[  start:end  ]
consumer.num_Lambda(  next_item  )		 def  _scan_PhiX174(self,  text,  consumer  ):
start  =  string.find(  text,  'PhiX174:'  )
end  =  string.find(  text,  'SV40:'  )<BR> next_item  =  text[  start:end  ]
consumer.num_PhiX174(  next_item  )


Clone # 1654
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 254
def  _scan_Adeno2(  self,  text,  consumer  ):
start  =  string.find(  text,  'Adeno2:'  )
end  =  string.find(  text,  'Lambda:'  )
next_item  =  text[  start:end  ]
consumer.num_Adeno2(  next_item  )		 def  _scan_source(self,  text,  consumer  ):
start  =  string.find(  text,  'Source:'  )
end  =  string.find(  text,  'Microorganism:'  )
next_item  =  text[  start:end  ]
consumer.source(  next_item  )


Clone # 1655
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 293		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 261
def  _scan_Lambda(  self,  text,  consumer  ):
start  =  string.find(  text,  'Lambda:'  )
end  =  string.find(  text,  'pBR322:'  )
next_item  =  text[  start:end  ]
consumer.num_Lambda(  next_item  )		 def  _scan_microorganism(self,  text,  consumer  ):
start  =  string.find(  text,  'Microorganism:'  )
end  =  string.find(  text,  'Growth  Temperature:'  )<BR> next_item  =  text[  start:end  ]
consumer.microorganism(  next_item  )


Clone # 1656
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 242		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 299
def  _scan_enzyme_num(self,  text,  consumer  ):
start  =  string.find(  text,  'REBASE  enzyme  #:'  )
end  =  string.find(  text,  'Prototype:'  )
next_item  =  text[  start:end  ]
consumer.enzyme_num(  next_item  )		 def  _scan_pBR322(self,  text,  consumer  ):
start  =  string.find(  text,  'pBR322:'  )
end  =  string.find(  text,  'PhiX174:'  )
next_item  =  text[  start:end  ]
consumer.num_pBR322(  next_item  )


Clone # 1657
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 248		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 305
def  _scan_prototype(self,    text,  consumer  ):
start  =  string.find(  text,  'Prototype:'  )
end  =  string.find(  text,  'Source:'  )
next_item  =  text[  start:end  ]
consumer.prototype(  next_item  )		 def  _scan_PhiX174(self,  text,  consumer  ):
start  =  string.find(  text,  'PhiX174:'  )
end  =  string.find(  text,  'SV40:'  )
next_item  =  text[  start:end  ]
consumer.num_PhiX174(  next_item  )


Clone # 1658
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 242		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 254
def  _scan_enzyme_num(self,  text,  consumer  ):
start  =  string.find(  text,  'REBASE  enzyme  #:'  )
end  =  string.find(  text,  'Prototype:'  )
next_item  =  text[  start:end  ]
consumer.enzyme_num(  next_item  )		 def  _scan_source(self,  text,  consumer  ):
start  =  string.find(  text,  'Source:'  )
end  =  string.find(  text,  'Microorganism:'  )
next_item  =  text[  start:end  ]
consumer.source(  next_item  )


Clone # 1659
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 248		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 261
def  _scan_prototype(self,    text,  consumer  ):
start  =  string.find(  text,  'Prototype:'  )
end  =  string.find(  text,  'Source:'  )
next_item  =  text[  start:end  ]
consumer.prototype(  next_item  )		 def  _scan_microorganism(self,  text,  consumer  ):
start  =  string.find(  text,  'Microorganism:'  )
end  =  string.find(  text,  'Growth  Temperature:'  )
next_item  =  text[  start:end  ]
consumer.microorganism(  next_item  )


Clone # 1660
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 507		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 498
def  _consrtm_line(self):
output  =  ""
if  self.consrtm:
output  +=  Record.INTERNAL_FORMAT  %  "CONSRTM"
output  +=  _wrapped_genbank(self.consrtm,  Record.GB_BASE_INDENT)
return  output		 def  _authors_line(self):
output  =  ""
if  self.authors:
output  +=  Record.INTERNAL_FORMAT  %  "AUTHORS"
output  +=  _wrapped_genbank(self.authors,  Record.GB_BASE_INDENT)
return  output


Clone # 1661
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 516		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 507
def  _title_line(self):
output  =  ""
if  self.title:
output  +=  Record.INTERNAL_FORMAT  %  "TITLE"
output  +=  _wrapped_genbank(self.title,  Record.GB_BASE_INDENT)
return  output		 def  _consrtm_line(self):
output  =  ""
if  self.consrtm:
output  +=  Record.INTERNAL_FORMAT  %  "CONSRTM"
output  +=  _wrapped_genbank(self.consrtm,  Record.GB_BASE_INDENT)
return  output


Clone # 1662
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 525		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 516
def  _journal_line(self):
output  =  ""
if  self.journal:
output  +=  Record.INTERNAL_FORMAT  %  "JOURNAL"
output  +=  _wrapped_genbank(self.journal,  Record.GB_BASE_INDENT)
return  output		 def  _title_line(self):
output  =  ""
if  self.title:
output  +=  Record.INTERNAL_FORMAT  %  "TITLE"
output  +=  _wrapped_genbank(self.title,  Record.GB_BASE_INDENT)
return  output


Clone # 1663
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 516		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 498
def  _title_line(self):
output  =  ""
if  self.title:
output  +=  Record.INTERNAL_FORMAT  %  "TITLE"
output  +=  _wrapped_genbank(self.title,  Record.GB_BASE_INDENT)
return  output		 def  _authors_line(self):
output  =  ""
if  self.authors:
output  +=  Record.INTERNAL_FORMAT  %  "AUTHORS"
output  +=  _wrapped_genbank(self.authors,  Record.GB_BASE_INDENT)
return  output


Clone # 1664
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 525		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/Record.py"
The first line is 507
def  _journal_line(self):
output  =  ""
if  self.journal:
output  +=  Record.INTERNAL_FORMAT  %  "JOURNAL"
output  +=  _wrapped_genbank(self.journal,  Record.GB_BASE_INDENT)
return  output		 def  _consrtm_line(self):
output  =  ""
if  self.consrtm:
output  +=  Record.INTERNAL_FORMAT  %  "CONSRTM"
output  +=  _wrapped_genbank(self.consrtm,  Record.GB_BASE_INDENT)
return  output


Clone # 1665
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 287		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 242
def  _scan_Adeno2(  self,  text,  consumer  ):
start  =  string.find(  text,  'Adeno2:'  )
end  =  string.find(  text,  'Lambda:'  )
next_item  =  text[  start:end  ]
consumer.num_Adeno2(  next_item  )		 def  _scan_enzyme_num(self,  text,  consumer  ):
start  =  string.find(  text,  'REBASE  enzyme  #:'  )
end  =  string.find(  text,  'Prototype:'  )
next_item  =  text[  start:end  ]
consumer.enzyme_num(  next_item  )


Clone # 1666
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 293		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 248
def  _scan_Lambda(  self,  text,  consumer  ):
start  =  string.find(  text,  'Lambda:'  )
end  =  string.find(  text,  'pBR322:'  )
next_item  =  text[  start:end  ]
consumer.num_Lambda(  next_item  )		 def  _scan_prototype(self,    text,  consumer  ):
start  =  string.find(  text,  'Prototype:'  )
end  =  string.find(  text,  'Source:'  )<BR> next_item  =  text[  start:end  ]
consumer.prototype(  next_item  )


Clone # 1667
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 299		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 254
def  _scan_pBR322(self,  text,  consumer  ):
start  =  string.find(  text,  'pBR322:'  )
end  =  string.find(  text,  'PhiX174:'  )<BR> next_item  =  text[  start:end  ]
consumer.num_pBR322(  next_item  )</span>		 def  _scan_source(self,  text,  consumer  ):<BR> start  =  string.find(  text,  'Source:'  )
end  =  string.find(  text,  'Microorganism:'  )<BR> next_item  =  text[  start:end  ]
consumer.source(  next_item  )</span>


Clone # 1668
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 305		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 261
def  _scan_PhiX174(self,  text,  consumer  ):
start  =  string.find(  text,  'PhiX174:'  )
end  =  string.find(  text,  'SV40:'  )
next_item  =  text[  start:end  ]
consumer.num_PhiX174(  next_item  )		 def  _scan_microorganism(self,  text,  consumer  ):
start  =  string.find(  text,  'Microorganism:'  )
end  =  string.find(  text,  'Growth  Temperature:'  )
next_item  =  text[  start:end  ]
consumer.microorganism(  next_item  )


Clone # 1669
Anti-unification distance between two trees = 3
Total size of two trees = 30
Total length of sequences = 2
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 311		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Rebase/__init__.py"
The first line is 267
def  _scan_SV40(self,  text,  consumer  ):
start  =  string.find(  text,  'SV40:'  )
end  =  start  +  30
next_item  =  text[  start:end  ]
consumer.num_SV40(  next_item  )		 def  _scan_temperature(self,  text,  consumer):
start  =  string.find(  text,  'Growth  Temperature:'  )
end  =  start  +  30
next_item  =  text[  start:end  ]
consumer.temperature(  next_item  )


Clone # 1670
Anti-unification distance between two trees = 2
Total size of two trees = 30
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Emboss/Primer.py"
The first line is 239		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Emboss/Primer.py"
The first line is 224
def  internal_gc(self,  gc):
self._cur_primer.internal_gc  =  float(gc)		 def  reverse_gc(self,  gc):
self._cur_primer.reverse_gc  =  float(gc)
def  internal_seq(self,  seq):
self._cur_primer.internal_seq  =  seq		 def  reverse_seq(self,  seq):
self._cur_primer.reverse_seq  =  seq


Clone # 1671
Anti-unification distance between two trees = 3
Total size of two trees = 30
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1065		Source file "/home/peter/clone_digger/biopython-1.44/Bio/GenBank/__init__.py"
The first line is 1053
def  organism(self,  content):
self.data.organism  =  content		 def  gi(self,  content):
self.data.gi  =  content
def  taxonomy(self,  content):
self.data.taxonomy  =  self._split_taxonomy(content)		 def  keywords(self,  content):
self.data.keywords  =  self._split_keywords(content)


Clone # 1672
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/formatdefs/search.py"
The first line is 93		Source file "/home/peter/clone_digger/biopython-1.44/Bio/formatdefs/search.py"
The first line is 46
wu_blastp  =  FormatObject(
name  =  "wu-blastp",
abbrev  =  "wu_blastp",
expression  =  "Bio.expressions.blast.wublast.blastp",
filter  =  "Bio.expressions.blast.wublast.blastp_appheader",
multirecord  =  0,		 ncbi_blastp  =  FormatObject(
name  =  "ncbi-blastp",
abbrev  =  "ncbi_blastp",
expression  =  "Bio.expressions.blast.ncbiblast.blastp",
filter  =  "Bio.expressions.blast.ncbiblast.blastp_appheader",
multirecord  =  0,
blastp.add(wu_blastp) blastp.add(ncbi_blastp)


Clone # 1673
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/formatdefs/search.py"
The first line is 102		Source file "/home/peter/clone_digger/biopython-1.44/Bio/formatdefs/search.py"
The first line is 55
wu_blastn  =  FormatObject(
name  =  "wu-blastn",
abbrev  =  "wu_blastn",
expression  =  "Bio.expressions.blast.wublast.blastn",
filter  =  "Bio.expressions.blast.wublast.blastn_appheader",
multirecord  =  0,		 ncbi_blastn  =  FormatObject(
name  =  "ncbi-blastn",
abbrev  =  "ncbi_blastn",
expression  =  "Bio.expressions.blast.ncbiblast.blastn",
filter  =  "Bio.expressions.blast.ncbiblast.blastn_appheader",
multirecord  =  0,
blastn.add(wu_blastn) blastn.add(ncbi_blastn)


Clone # 1674
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 4
Source file "/home/peter/clone_digger/biopython-1.44/Bio/formatdefs/search.py"
The first line is 111		Source file "/home/peter/clone_digger/biopython-1.44/Bio/formatdefs/search.py"
The first line is 64
wu_blastx  =  FormatObject(
name  =  "wu-blastx",
abbrev  =  "wu_blastx",
expression  =  "Bio.expressions.blast.wublast.blastx",
filter  =  "Bio.expressions.blast.wublast.blastx_appheader",
multirecord  =  0,		 ncbi_blastx  =  FormatObject(
name  =  "ncbi-blastx",
abbrev  =  "ncbi_blastx",
expression  =  "Bio.expressions.blast.ncbiblast.blastx",
filter  =  "Bio.expressions.blast.ncbiblast.blastx_appheader",
multirecord  =  0,
blastx.add(wu_blastx) blastx.add(ncbi_blastx)


Clone # 1675
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 24		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 37
from  Martel  import  ToEol from  Martel  import  Rep1
from  Martel  import  AnyEol from  Martel  import  Any
from  Martel  import  Any from  Martel  import  AnyBut
from  Martel  import  Word from  Martel  import  RepN
from  Martel  import  Opt from  Martel  import  Opt


Clone # 1676
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 28		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19
from  Martel  import  Str from  Martel  import  Str
from  Martel  import  AnyEol from  Martel  import  Str1
from  Martel  import  ToEol from  Martel  import  Alt
from  Martel  import  Group from  Martel  import  Rep
from  Martel  import  Alt from  Martel  import  Group


Clone # 1677
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 31
from  Martel  import  Str from  Martel  import  Str
from  Martel  import  Str1 from  Martel  import  AnyEol
from  Martel  import  Alt from  Martel  import  ToEol
from  Martel  import  Rep from  Martel  import  Group
from  Martel  import  Group from  Martel  import  Alt


Clone # 1678
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 24		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 36
from  Martel  import  ToEol from  Martel  import  Rep
from  Martel  import  AnyEol from  Martel  import  Rep1
from  Martel  import  Any from  Martel  import  Any
from  Martel  import  Word from  Martel  import  AnyBut
from  Martel  import  Opt from  Martel  import  RepN


Clone # 1679
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 30
from  Martel  import  Str from  Martel  import  RecordReader
from  Martel  import  Str1 from  Martel  import  Str
from  Martel  import  Alt from  Martel  import  AnyEol
from  Martel  import  Rep from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  Group


Clone # 1680
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19		Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 27
from  Martel  import  Str from  Martel  import  RecordReader
from  Martel  import  Str1 from  Martel  import  Str
from  Martel  import  Alt from  Martel  import  AnyEol
from  Martel  import  Rep from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  Group


Clone # 1681
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19		Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/nbrf_format.py"
The first line is 19
from  Martel  import  Str from  Martel  import  RecordReader
from  Martel  import  Str1 from  Martel  import  Str
from  Martel  import  Alt from  Martel  import  AnyEol,  UntilEol
from  Martel  import  Rep from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  Group


Clone # 1682
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/nbrf_format.py"
The first line is 20		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19
from  Martel  import  Str from  Martel  import  Str
from  Martel  import  AnyEol,  UntilEol from  Martel  import  Str1
from  Martel  import  ToEol from  Martel  import  Alt
from  Martel  import  Group from  Martel  import  Rep
from  Martel  import  Alt, &nbsp;Opt from  Martel  import  Group


Clone # 1683
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/nbrf_format.py"
The first line is 25		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 24
from  Martel  import  Rep from  Martel  import  ToEol
from  Martel  import  Rep1 from  Martel  import  AnyEol
from  Martel  import  Any from  Martel  import  Any
from  Martel  import  AnyBut from  Martel  import  Word
from  Martel  import  UntilSep from  Martel  import  Opt


Clone # 1684
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/ecell_format.py"
The first line is 27
from  Martel  import  Str from  Martel  import  RecordReader
from  Martel  import  Str1 from  Martel  import  Str
from  Martel  import  Alt from  Martel  import  AnyEol
from  Martel  import  Rep from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  Group


Clone # 1685
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 30		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19
from  Martel  import  ToEol from  Martel  import  Str
from  Martel  import  Group from  Martel  import  Str1
from  Martel  import  Alt from  Martel  import  Alt
from  Martel  import  Opt from  Martel  import  Rep
from  Martel  import  Rep from  Martel  import  Group


Clone # 1686
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/ecell_format.py"
The first line is 28
from  Martel  import  Str from  Martel  import  Str
from  Martel  import  Str1 from  Martel  import  AnyEol
from  Martel  import  Alt from  Martel  import  ToEol
from  Martel  import  Rep from  Martel  import  Group
from  Martel  import  Group from  Martel  import  Alt


Clone # 1687
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 24		Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/ecell_format.py"
The first line is 33
from  Martel  import  ToEol from  Martel  import  Rep
from  Martel  import  AnyEol from  Martel  import  Rep1
from  Martel  import  Any from  Martel  import  Any
from  Martel  import  Word from  Martel  import  AnyBut
from  Martel  import  Opt from  Martel  import  Expression


Clone # 1688
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 30		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 21
from  Martel  import  RecordReader from  Martel  import  Alt
from  Martel  import  Str from  Martel  import  Rep
from  Martel  import  AnyEol from  Martel  import  Group
from  Martel  import  ToEol from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  AnyEol


Clone # 1689
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/ECell/ecell_format.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 21
from  Martel  import  RecordReader from  Martel  import  Alt
from  Martel  import  Str from  Martel  import  Rep
from  Martel  import  AnyEol from  Martel  import  Group
from  Martel  import  ToEol from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  AnyEol


Clone # 1690
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 27		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 21
from  Martel  import  RecordReader from  Martel  import  Alt
from  Martel  import  Str from  Martel  import  Rep
from  Martel  import  AnyEol from  Martel  import  Group
from  Martel  import  ToEol from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  AnyEol


Clone # 1691
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/nbrf_format.py"
The first line is 19		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 21
from  Martel  import  RecordReader from  Martel  import  Alt
from  Martel  import  Str from  Martel  import  Rep
from  Martel  import  AnyEol, &nbsp;UntilEol from  Martel  import  Group
from  Martel  import  ToEol from  Martel  import  ToEol
from  Martel  import  Group from  Martel  import  AnyEol


Clone # 1692
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 31		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19
from  Martel  import  Group from  Martel  import  Str
from  Martel  import  Alt from  Martel  import  Str1
from  Martel  import  Opt from  Martel  import  Alt
from  Martel  import  Rep from  Martel  import  Rep
from  Martel  import  Rep1 from  Martel  import  Group


Clone # 1693
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/NBRF/nbrf_format.py"
The first line is 22		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 19
from  Martel  import  ToEol from  Martel  import  Str
from  Martel  import  Group from  Martel  import  Str1
from  Martel  import  Alt,  Opt from  Martel  import  Alt
from  Martel  import  Rep from  Martel  import  Rep
from  Martel  import  Rep1 from  Martel  import  Group


Clone # 1694
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/Saf/saf_format.py"
The first line is 37
from  Martel  import  AnyEol from  Martel  import  Rep1
from  Martel  import  ToEol from  Martel  import  Any
from  Martel  import  Group from  Martel  import  AnyBut
from  Martel  import  Alt from  Martel  import  RepN
from  Martel  import  Opt from  Martel  import  Opt


Clone # 1695
Anti-unification distance between two trees = 4
Total size of two trees = 30
Total length of sequences = 10
Source file "/home/peter/clone_digger/biopython-1.44/Bio/CDD/cdd_format.py"
The first line is 29		Source file "/home/peter/clone_digger/biopython-1.44/Bio/LocusLink/locus_format.py"
The first line is 24
from  Martel  import  AnyEol from  Martel  import  ToEol
from  Martel  import  ToEol from  Martel  import  AnyEol
from  Martel  import  Group from  Martel  import  Any
from  Martel  import  Alt from  Martel  import  Word
from  Martel  import  Opt from  Martel  import  Opt

(*) Warning: the highlighting of differences is based on diff and doesn't reflect the tree-based clone detection algorithm.

Clone Digger is aimed to find software clones in Python and Java programs. It is provided under the GPL license and can be downloaded from the site http://clonedigger.sourceforge.net